Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:53:48 (32345): wrapper (7.7.26015): starting
15:53:48 (32345): wrapper: running run_atlas (--nthreads 12)
[2025-04-18 15:53:48] Arguments: --nthreads 12
[2025-04-18 15:53:48] Threads: 12
[2025-04-18 15:53:48] Checking for CVMFS
[2025-04-18 15:53:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-18 15:53:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-18 15:53:48] Running cvmfs_config stat atlas.cern.ch
[2025-04-18 15:53:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-18 15:53:48] 2.11.2.0 10995 193308 158376 145013 2 56 19201953 20275200 1 130560 0 23261915 99.990 7020557 48700 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-18 15:53:48] CVMFS is ok
[2025-04-18 15:53:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-18 15:53:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-18 15:53:48] Further information can be found at the LHC@home message board.
[2025-04-18 15:53:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-18 15:53:48] Checking for apptainer binary...
[2025-04-18 15:53:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-18 15:53:48] Running /usr/bin/apptainer --version
[2025-04-18 15:53:48] apptainer version 1.3.2-1.el7
[2025-04-18 15:53:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-18 15:53:49] c-205-22.aglt2.org
[2025-04-18 15:53:49] apptainer works
[2025-04-18 15:53:49] Set ATHENA_PROC_NUMBER=12
[2025-04-18 15:53:49] Set ATHENA_CORE_NUMBER=12
[2025-04-18 15:53:49] Starting ATLAS job with PandaID=6606430948
[2025-04-18 15:53:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-18 17:16:01]  *** The last 200 lines of the pilot log: ***
[2025-04-18 17:16:01]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-04-18 17:16:01]  is_altstaged=None
[2025-04-18 17:16:01]  is_tar=False
[2025-04-18 17:16:01]  lfn=log.44075483._068793.job.log.tgz.1
[2025-04-18 17:16:01]  mtime=0
[2025-04-18 17:16:01]  protocol_id=None
[2025-04-18 17:16:01]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-18 17:16:01]  replicas=None
[2025-04-18 17:16:01]  scope=mc23_13p6TeV
[2025-04-18 17:16:01]  status=None
[2025-04-18 17:16:01]  status_code=0
[2025-04-18 17:16:01]  storage_token=
[2025-04-18 17:16:01]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6606430948/log.44075483._068793.job.log.tgz.1
[2025-04-18 17:16:01]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/be/58/log.44075483._068793.job.log.tgz.1
[2025-04-18 17:16:01]  workdir=None
[2025-04-18 17:16:01] ]
[2025-04-18 17:16:01] 2025-04-18 21:15:37,203 | INFO     | transferring file log.44075483._068793.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6606430948/log.44075483._068793.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-04-18 17:16:01] 2025-04-18 21:15:37,203 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6606430948/log.44075483._068793.job.log.tgz.1 /tmp/boinchome/slots/0/log.44075483._068793.job
[2025-04-18 17:16:01] 2025-04-18 21:15:37,223 | INFO     | adding to output.list: log.44075483._068793.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/be/58/log.44075483._068793.job.log.tg
[2025-04-18 17:16:01] 2025-04-18 21:15:37,224 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-18 17:16:01] 2025-04-18 21:15:37,225 | INFO     | summary of transferred files:
[2025-04-18 17:16:01] 2025-04-18 21:15:37,225 | INFO     |  -- lfn=log.44075483._068793.job.log.tgz.1, status_code=0, status=transferred
[2025-04-18 17:16:01] 2025-04-18 21:15:37,225 | INFO     | stage-out finished correctly
[2025-04-18 17:16:01] 2025-04-18 21:15:37,779 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-18 17:16:01] 2025-04-18 21:15:38,011 | INFO     | job 6606430948 has state=finished
[2025-04-18 17:16:01] 2025-04-18 21:15:38,011 | INFO     | preparing for final server update for job 6606430948 in state='finished'
[2025-04-18 17:16:01] 2025-04-18 21:15:38,073 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-04-18 17:16:01] 2025-04-18 21:15:38,073 | INFO     | this job has now completed (state=finished)
[2025-04-18 17:16:01] 2025-04-18 21:15:38,073 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-18 17:16:01] 2025-04-18 21:15:38,073 | INFO     | log transfer has been attempted: DONE
[2025-04-18 17:16:01] 2025-04-18 21:15:38,073 | INFO     | job 6606430948 has finished - writing final server update
[2025-04-18 17:16:01] 2025-04-18 21:15:38,074 | INFO     | total number of processed events: 400 (read)
[2025-04-18 17:16:01] 2025-04-18 21:15:38,075 | INFO     | executing command: lscpu
[2025-04-18 17:16:01] 2025-04-18 21:15:38,101 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-18 17:16:01] 2025-04-18 21:15:39,163 | INFO     | monitor loop #365: job 0:6606430948 is in state 'finished'
[2025-04-18 17:16:01] 2025-04-18 21:15:39,167 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-18 17:16:01] 2025-04-18 21:15:41,670 | INFO     | monitor loop #366: job 0:6606430948 is in state 'finished'
[2025-04-18 17:16:01] 2025-04-18 21:15:41,671 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-18 17:16:01] 2025-04-18 21:15:42,717 | INFO     | CPU arch script returned: x86-64-v2
[2025-04-18 17:16:01] 2025-04-18 21:15:42,717 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6606430948/memory_monitor_summary.json (trf name=prmon)
[2025-04-18 17:16:01] 2025-04-18 21:15:42,718 | INFO     | extracted standard info from prmon json
[2025-04-18 17:16:01] 2025-04-18 21:15:42,718 | INFO     | extracted standard memory fields from prmon json
[2025-04-18 17:16:01] 2025-04-18 21:15:42,719 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-18 17:16:01] 2025-04-18 21:15:42,719 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-18 17:16:01] 2025-04-18 21:15:42,719 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-18 17:16:01] 2025-04-18 21:15:42,722 | INFO     | fitting pss+swap vs Time
[2025-04-18 17:16:01] 2025-04-18 21:15:42,722 | INFO     | sum of square deviations: 120605052.0
[2025-04-18 17:16:01] 2025-04-18 21:15:42,723 | INFO     | sum of deviations: 21954123565.0
[2025-04-18 17:16:01] 2025-04-18 21:15:42,723 | INFO     | mean x: 1745008573.0
[2025-04-18 17:16:01] 2025-04-18 21:15:42,723 | INFO     | mean y: 2534979.1506849313
[2025-04-18 17:16:01] 2025-04-18 21:15:42,723 | INFO     | -- intersect: -317646959783.52576
[2025-04-18 17:16:01] 2025-04-18 21:15:42,723 | INFO     | intersect: -317646959783.52576
[2025-04-18 17:16:01] 2025-04-18 21:15:42,724 | INFO     | chi2: 1.775645585078635
[2025-04-18 17:16:01] 2025-04-18 21:15:42,724 | INFO     | -- intersect: -317646959783.52576
[2025-04-18 17:16:01] 2025-04-18 21:15:42,724 | INFO     | current memory leak: 182.03 B/s (using 73 data points, chi2=1.78)
[2025-04-18 17:16:01] 2025-04-18 21:15:42,725 | INFO     | ..............................
[2025-04-18 17:16:01] 2025-04-18 21:15:42,725 | INFO     | . Timing measurements:
[2025-04-18 17:16:01] 2025-04-18 21:15:42,725 | INFO     | . get job = 0 s
[2025-04-18 17:16:01] 2025-04-18 21:15:42,725 | INFO     | . initial setup = 3 s
[2025-04-18 17:16:01] 2025-04-18 21:15:42,725 | INFO     | . payload setup = 7 s
[2025-04-18 17:16:01] 2025-04-18 21:15:42,726 | INFO     | . stage-in = 0 s
[2025-04-18 17:16:01] 2025-04-18 21:15:42,726 | INFO     | . payload execution = 4866 s
[2025-04-18 17:16:01] 2025-04-18 21:15:42,726 | INFO     | . stage-out = 0 s
[2025-04-18 17:16:01] 2025-04-18 21:15:42,726 | INFO     | . log creation = 0 s
[2025-04-18 17:16:01] 2025-04-18 21:15:42,726 | INFO     | ..............................
[2025-04-18 17:16:01] 2025-04-18 21:15:43,093 | INFO     | 
[2025-04-18 17:16:01] 2025-04-18 21:15:43,093 | INFO     | job summary report
[2025-04-18 17:16:01] 2025-04-18 21:15:43,093 | INFO     | --------------------------------------------------
[2025-04-18 17:16:01] 2025-04-18 21:15:43,093 | INFO     | PanDA job id: 6606430948
[2025-04-18 17:16:01] 2025-04-18 21:15:43,093 | INFO     | task id: 44075483
[2025-04-18 17:16:01] 2025-04-18 21:15:43,094 | INFO     | errors: (none)
[2025-04-18 17:16:01] 2025-04-18 21:15:43,094 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-18 17:16:01] 2025-04-18 21:15:43,094 | INFO     | pilot state: finished 
[2025-04-18 17:16:01] 2025-04-18 21:15:43,094 | INFO     | transexitcode: 0
[2025-04-18 17:16:01] 2025-04-18 21:15:43,094 | INFO     | exeerrorcode: 0
[2025-04-18 17:16:01] 2025-04-18 21:15:43,094 | INFO     | exeerrordiag: 
[2025-04-18 17:16:01] 2025-04-18 21:15:43,095 | INFO     | exitcode: 0
[2025-04-18 17:16:01] 2025-04-18 21:15:43,095 | INFO     | exitmsg: OK
[2025-04-18 17:16:01] 2025-04-18 21:15:43,095 | INFO     | cpuconsumptiontime: 46533 s
[2025-04-18 17:16:01] 2025-04-18 21:15:43,095 | INFO     | nevents: 400
[2025-04-18 17:16:01] 2025-04-18 21:15:43,095 | INFO     | neventsw: 0
[2025-04-18 17:16:01] 2025-04-18 21:15:43,095 | INFO     | pid: 10141
[2025-04-18 17:16:01] 2025-04-18 21:15:43,095 | INFO     | pgrp: 10141
[2025-04-18 17:16:01] 2025-04-18 21:15:43,095 | INFO     | corecount: 12
[2025-04-18 17:16:01] 2025-04-18 21:15:43,095 | INFO     | event service: False
[2025-04-18 17:16:01] 2025-04-18 21:15:43,096 | INFO     | sizes: {0: 2426597, 1: 2426852, 6: 2427058, 12: 2427086, 4877: 2453179, 4878: 2462120, 4879: 2462304, 4884: 2462474}
[2025-04-18 17:16:01] 2025-04-18 21:15:43,096 | INFO     | --------------------------------------------------
[2025-04-18 17:16:01] 2025-04-18 21:15:43,096 | INFO     | 
[2025-04-18 17:16:01] 2025-04-18 21:15:43,096 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-04-18 17:16:01] 2025-04-18 21:15:43,120 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-18 17:16:01] 2025-04-18 21:15:43,121 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-18 17:16:01] 2025-04-18 21:15:43,121 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-18 17:16:01] 2025-04-18 21:15:43,121 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-18 17:16:01] 2025-04-18 21:15:43,121 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-18 17:16:01] 2025-04-18 21:15:43,121 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-18 17:16:01] 2025-04-18 21:15:43,121 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-18 17:16:01] 2025-04-18 21:15:43,122 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-18 17:16:01] 2025-04-18 21:15:43,122 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-18 17:16:01] 2025-04-18 21:15:43,122 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-18 17:16:01] 2025-04-18 21:15:43,122 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-18 17:16:01] 2025-04-18 21:15:43,122 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-18 17:16:01] 2025-04-18 21:15:43,122 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-18 17:16:01] 2025-04-18 21:15:43,123 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-18 17:16:01] 2025-04-18 21:15:43,123 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-18 17:16:01] 2025-04-18 21:15:43,123 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-18 17:16:01] 2025-04-18 21:15:43,123 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-18 17:16:01] 2025-04-18 21:15:43,123 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-18 17:16:01] 2025-04-18 21:15:43,123 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-18 17:16:01] 2025-04-18 21:15:43,123 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-18 17:16:01] 2025-04-18 21:15:43,124 | INFO     | job 6606430948 has completed (purged errors)
[2025-04-18 17:16:01] 2025-04-18 21:15:43,124 | INFO     | overall cleanup function is called
[2025-04-18 17:16:01] 2025-04-18 21:15:44,066 | INFO     | PID=3674 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-04-18 17:16:01] 2025-04-18 21:15:44,129 | INFO     | --- collectZombieJob: --- 10, [10141]
[2025-04-18 17:16:01] 2025-04-18 21:15:44,129 | INFO     | zombie collector waiting for pid 10141
[2025-04-18 17:16:01] 2025-04-18 21:15:44,130 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-18 17:16:01] 2025-04-18 21:15:44,130 | INFO     | collected zombie processes
[2025-04-18 17:16:01] 2025-04-18 21:15:44,130 | INFO     | will attempt to kill all subprocesses of pid=10141
[2025-04-18 17:16:01] 2025-04-18 21:15:44,221 | INFO     | process IDs to be killed: [10141] (in reverse order)
[2025-04-18 17:16:01] 2025-04-18 21:15:44,272 | WARNING  | found no corresponding commands to process id(s)
[2025-04-18 17:16:01] 2025-04-18 21:15:44,272 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-18 17:16:01] 2025-04-18 21:15:44,276 | INFO     | did not find any defunct processes belonging to 10141
[2025-04-18 17:16:01] 2025-04-18 21:15:44,279 | INFO     | did not find any defunct processes belonging to 10141
[2025-04-18 17:16:01] 2025-04-18 21:15:44,279 | INFO     | ready for new job
[2025-04-18 17:16:01] 2025-04-18 21:15:44,279 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-18 17:16:01] 2025-04-18 21:15:44,281 | INFO     | **************************************
[2025-04-18 17:16:01] 2025-04-18 21:15:44,281 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-18 17:16:01] 2025-04-18 21:15:44,281 | INFO     | **************************************
[2025-04-18 17:16:01] 2025-04-18 21:15:44,281 | INFO     | 
[2025-04-18 17:16:01] 2025-04-18 21:15:44,282 | INFO     | architecture information:
[2025-04-18 17:16:01] 2025-04-18 21:15:44,283 | INFO     | executing command: cat /etc/os-release
[2025-04-18 17:16:01] 2025-04-18 21:15:44,297 | INFO     | cat /etc/os-release:
[2025-04-18 17:16:01] NAME="CentOS Linux"
[2025-04-18 17:16:01] VERSION="7 (Core)"
[2025-04-18 17:16:01] ID="centos"
[2025-04-18 17:16:01] ID_LIKE="rhel fedora"
[2025-04-18 17:16:01] VERSION_ID="7"
[2025-04-18 17:16:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-18 17:16:01] ANSI_COLOR="0;31"
[2025-04-18 17:16:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-18 17:16:01] HOME_URL="https://www.centos.org/"
[2025-04-18 17:16:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-18 17:16:01] 
[2025-04-18 17:16:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-18 17:16:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-18 17:16:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-18 17:16:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-18 17:16:01] 
[2025-04-18 17:16:01] 2025-04-18 21:15:44,297 | INFO     | **************************************
[2025-04-18 17:16:01] 2025-04-18 21:15:44,801 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-04-18 17:16:01] 2025-04-18 21:15:44,817 | INFO     | sufficient remaining disk space (29392633856 B)
[2025-04-18 17:16:01] 2025-04-18 21:15:44,818 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-18 17:16:01] 2025-04-18 21:15:44,818 | INFO     | current server update state: UPDATING_FINAL
[2025-04-18 17:16:01] 2025-04-18 21:15:44,818 | INFO     | update_server=False
[2025-04-18 17:16:01] 2025-04-18 21:15:44,818 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-18 17:16:01] 2025-04-18 21:15:44,819 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-18 17:16:01] 2025-04-18 21:15:44,819 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-18 17:16:01] 2025-04-18 21:15:44,819 | INFO     | found 0 job(s) in 20 queues
[2025-04-18 17:16:01] 2025-04-18 21:15:44,820 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-18 17:16:01] 2025-04-18 21:15:44,820 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-18 17:16:01] 2025-04-18 21:15:44,902 | INFO     | all payload control threads have been joined
[2025-04-18 17:16:01] 2025-04-18 21:15:45,177 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-18 17:16:01] 2025-04-18 21:15:45,177 | INFO     | aborting loop
[2025-04-18 17:16:01] 2025-04-18 21:15:45,324 | INFO     | all data control threads have been joined
[2025-04-18 17:16:01] 2025-04-18 21:15:45,334 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-18 17:16:01] 2025-04-18 21:15:45,824 | INFO     | [job] retrieve thread has finished
[2025-04-18 17:16:01] 2025-04-18 21:15:45,900 | INFO     | all job control threads have been joined
[2025-04-18 17:16:01] 2025-04-18 21:15:45,907 | INFO     | [payload] control thread has finished
[2025-04-18 17:16:01] 2025-04-18 21:15:46,155 | INFO     | [payload] validate_pre thread has finished
[2025-04-18 17:16:01] 2025-04-18 21:15:46,175 | INFO     | [job] create_data_payload thread has finished
[2025-04-18 17:16:01] 2025-04-18 21:15:46,182 | INFO     | [job] job monitor thread has finished
[2025-04-18 17:16:01] 2025-04-18 21:15:46,257 | INFO     | [payload] failed_post thread has finished
[2025-04-18 17:16:01] 2025-04-18 21:15:46,329 | INFO     | [data] control thread has finished
[2025-04-18 17:16:01] 2025-04-18 21:15:46,509 | INFO     | [data] copytool_in thread has finished
[2025-04-18 17:16:01] 2025-04-18 21:15:46,839 | INFO     | [payload] validate_post thread has finished
[2025-04-18 17:16:01] 2025-04-18 21:15:46,905 | INFO     | [job] control thread has finished
[2025-04-18 17:16:01] 2025-04-18 21:15:46,942 | INFO     | [job] validate thread has finished
[2025-04-18 17:16:01] 2025-04-18 21:15:47,325 | INFO     | [payload] execute_payloads thread has finished
[2025-04-18 17:16:01] 2025-04-18 21:15:47,339 | INFO     | [data] copytool_out thread has finished
[2025-04-18 17:16:01] 2025-04-18 21:15:47,820 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-18 17:16:01] 2025-04-18 21:15:48,825 | INFO     | [job] queue monitor thread has finished
[2025-04-18 17:16:01] 2025-04-18 21:15:48,826 | INFO     | [data] queue_monitor thread has finished
[2025-04-18 17:16:01] 2025-04-18 21:15:55,089 | INFO     | job.realtimelogging is not enabled
[2025-04-18 17:16:01] 2025-04-18 21:15:56,094 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-18 17:16:01] 2025-04-18 21:15:56,448 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139939411687232)>', '<ExcThread(monitor, started 139938741868288)>']
[2025-04-18 17:16:01] 2025-04-18 21:15:56,877 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-18 17:16:01] 2025-04-18 21:15:56,877 | INFO     | [monitor] control thread has ended
[2025-04-18 17:16:01] 2025-04-18 21:16:01,468 | INFO     | all workflow threads have been joined
[2025-04-18 17:16:01] 2025-04-18 21:16:01,468 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-18 17:16:01] 2025-04-18 21:16:01,469 | INFO     | traces error code: 0
[2025-04-18 17:16:01] 2025-04-18 21:16:01,469 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-18 17:16:01] 2025-04-18 21:16:01,564 [wrapper] ==== pilot stdout END ====
[2025-04-18 17:16:01] 2025-04-18 21:16:01,568 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-18 17:16:01] 2025-04-18 21:16:01,572 [wrapper] pilotpid: 3674
[2025-04-18 17:16:01] 2025-04-18 21:16:01,575 [wrapper] Pilot exit status: 0
[2025-04-18 17:16:01] 2025-04-18 21:16:01,590 [wrapper] pandaids: 6606430948
[2025-04-18 17:16:01] 2025-04-18 21:16:01,628 [wrapper] cleanup supervisor_pilot  4844 3675
[2025-04-18 17:16:01] 2025-04-18 21:16:01,632 [wrapper] Test setup, not cleaning
[2025-04-18 17:16:01] 2025-04-18 21:16:01,637 [wrapper] apfmon messages muted
[2025-04-18 17:16:01] 2025-04-18 21:16:01,640 [wrapper] ==== wrapper stdout END ====
[2025-04-18 17:16:01] 2025-04-18 21:16:01,644 [wrapper] ==== wrapper stderr END ====
[2025-04-18 17:16:01]  *** Error codes and diagnostics ***
[2025-04-18 17:16:01]     "exeErrorCode": 0,
[2025-04-18 17:16:01]     "exeErrorDiag": "",
[2025-04-18 17:16:01]     "pilotErrorCode": 0,
[2025-04-18 17:16:01]     "pilotErrorDiag": "",
[2025-04-18 17:16:01]  *** Listing of results directory ***
[2025-04-18 17:16:01] total 418772
[2025-04-18 17:16:01] -rw-r--r-- 1 boincer umatlas    495897 Apr 18 07:32 pilot3.tar.gz
[2025-04-18 17:16:01] -rwx------ 1 boincer umatlas     37140 Apr 18 07:38 runpilot2-wrapper.sh
[2025-04-18 17:16:01] -rw-r--r-- 1 boincer umatlas      5111 Apr 18 07:38 queuedata.json
[2025-04-18 17:16:01] -rw-r--r-- 1 boincer umatlas       100 Apr 18 15:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-18 17:16:01] -rwxr-xr-x 1 boincer umatlas      7986 Apr 18 15:53 run_atlas
[2025-04-18 17:16:01] -rw-r--r-- 1 boincer umatlas       105 Apr 18 15:53 job.xml
[2025-04-18 17:16:01] -rw-r--r-- 2 boincer umatlas 224265609 Apr 18 15:53 EVNT.44075481._002672.pool.root.1
[2025-04-18 17:16:01] -rw-r--r-- 2 boincer umatlas     17569 Apr 18 15:53 start_atlas.sh
[2025-04-18 17:16:01] drwxrwx--x 2 boincer umatlas      4096 Apr 18 15:53 shared
[2025-04-18 17:16:01] -rw-r--r-- 2 boincer umatlas    508890 Apr 18 15:53 input.tar.gz
[2025-04-18 17:16:01] -rw-r--r-- 1 boincer umatlas         0 Apr 18 15:53 boinc_lockfile
[2025-04-18 17:16:01] -rw-r--r-- 1 boincer umatlas      2579 Apr 18 15:53 pandaJob.out
[2025-04-18 17:16:01] -rw------- 1 boincer umatlas       424 Apr 18 15:53 setup.sh.local
[2025-04-18 17:16:01] -rw------- 1 boincer umatlas    991292 Apr 18 15:54 agis_schedconf.cvmfs.json
[2025-04-18 17:16:01] -rw------- 1 boincer umatlas   1618536 Apr 18 15:54 agis_ddmendpoints.agis.ALL.json
[2025-04-18 17:16:01] drwx------ 4 boincer umatlas      4096 Apr 18 15:54 pilot3
[2025-04-18 17:16:01] -rw-r--r-- 1 boincer umatlas      5868 Apr 18 17:10 init_data.xml
[2025-04-18 17:16:01] -rw------- 1 boincer umatlas        95 Apr 18 17:15 pilot_heartbeat.json
[2025-04-18 17:16:01] -rw------- 1 boincer umatlas 199015747 Apr 18 17:15 HITS.44075483._068793.pool.root.1
[2025-04-18 17:16:01] -rw-r--r-- 1 boincer umatlas       529 Apr 18 17:15 boinc_task_state.xml
[2025-04-18 17:16:01] -rw------- 1 boincer umatlas      1049 Apr 18 17:15 memory_monitor_summary.json
[2025-04-18 17:16:01] -rw------- 1 boincer umatlas    375769 Apr 18 17:15 log.44075483._068793.job.log.tgz.1
[2025-04-18 17:16:01] -rw------- 1 boincer umatlas      7750 Apr 18 17:15 heartbeat.json
[2025-04-18 17:16:01] -rw-r--r-- 1 boincer umatlas        27 Apr 18 17:15 wrapper_checkpoint.txt
[2025-04-18 17:16:01] -rw-r--r-- 1 boincer umatlas      8192 Apr 18 17:15 boinc_mmap_file
[2025-04-18 17:16:01] -rw------- 1 boincer umatlas      4548 Apr 18 17:16 pilotlog.txt
[2025-04-18 17:16:01] -rw------- 1 boincer umatlas    465437 Apr 18 17:16 log.44075483._068793.job.log.1
[2025-04-18 17:16:01] -rw------- 1 boincer umatlas       357 Apr 18 17:16 output.list
[2025-04-18 17:16:01] -rw-r--r-- 1 boincer umatlas       620 Apr 18 17:16 runtime_log
[2025-04-18 17:16:01] -rw------- 1 boincer umatlas    860160 Apr 18 17:16 result.tar.gz
[2025-04-18 17:16:01] -rw------- 1 boincer umatlas       658 Apr 18 17:16 UtnNDmOEzP7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmJDfLDmnd8Ldm.diag
[2025-04-18 17:16:01] -rw-r--r-- 1 boincer umatlas     11015 Apr 18 17:16 runtime_log.err
[2025-04-18 17:16:01] -rw-r--r-- 1 boincer umatlas     21433 Apr 18 17:16 stderr.txt
[2025-04-18 17:16:01] HITS file was successfully produced:
[2025-04-18 17:16:01] -rw------- 1 boincer umatlas 199015747 Apr 18 17:15 shared/HITS.pool.root.1
[2025-04-18 17:16:01]  *** Contents of shared directory: ***
[2025-04-18 17:16:01] total 414724
[2025-04-18 17:16:01] -rw-r--r-- 2 boincer umatlas 224265609 Apr 18 15:53 ATLAS.root_0
[2025-04-18 17:16:01] -rw-r--r-- 2 boincer umatlas     17569 Apr 18 15:53 start_atlas.sh
[2025-04-18 17:16:01] -rw-r--r-- 2 boincer umatlas    508890 Apr 18 15:53 input.tar.gz
[2025-04-18 17:16:01] -rw------- 1 boincer umatlas 199015747 Apr 18 17:15 HITS.pool.root.1
[2025-04-18 17:16:01] -rw------- 1 boincer umatlas    860160 Apr 18 17:16 result.tar.gz
17:16:03 (32345): run_atlas exited; CPU time 46513.568606
17:16:03 (32345): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN