Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:16:34 (65111): wrapper (7.7.26015): starting
15:16:34 (65111): wrapper: running run_atlas (--nthreads 8)
[2025-04-18 15:16:34] Arguments: --nthreads 8
[2025-04-18 15:16:34] Threads: 8
[2025-04-18 15:16:34] Checking for CVMFS
[2025-04-18 15:16:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-18 15:16:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-18 15:16:35] Running cvmfs_config stat atlas.cern.ch
[2025-04-18 15:16:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-18 15:16:36] 2.11.2.0 21107 19547 161692 145013 1 316 9589068 18432000 28935 130560 0 123520320 98.563 370499789 57040 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-18 15:16:36] CVMFS is ok
[2025-04-18 15:16:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-18 15:16:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-18 15:16:36] Further information can be found at the LHC@home message board.
[2025-04-18 15:16:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-18 15:16:36] Checking for apptainer binary...
[2025-04-18 15:16:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-18 15:16:36] Running /usr/bin/apptainer --version
[2025-04-18 15:16:36] apptainer version 1.3.2-1.el7
[2025-04-18 15:16:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-18 15:16:38] c-212-4.aglt2.org
[2025-04-18 15:16:38] apptainer works
[2025-04-18 15:16:38] Set ATHENA_PROC_NUMBER=8
[2025-04-18 15:16:38] Set ATHENA_CORE_NUMBER=8
[2025-04-18 15:16:38] Starting ATLAS job with PandaID=6604673907
[2025-04-18 15:16:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-18 15:39:07]  *** The last 200 lines of the pilot log: ***
[2025-04-18 15:39:07]   File "/tmp/boinchome/slots/3/pilot3/pilot/control/data.py", line 1032, in _stage_out_new
[2025-04-18 15:39:07]     create_log(job.workdir, logfile.lfn, tarball_name, args.cleanup,
[2025-04-18 15:39:07]   File "/tmp/boinchome/slots/3/pilot3/pilot/control/data.py", line 771, in create_log
[2025-04-18 15:39:07]     user.remove_redundant_files(workdir, piloterrors=piloterrors, debugmode=debugmode)
[2025-04-18 15:39:07]   File "/tmp/boinchome/slots/3/pilot3/pilot/user/atlas/common.py", line 2159, in remove_redundant_files
[2025-04-18 15:39:07]     list_work_dir(workdir)
[2025-04-18 15:39:07]   File "/tmp/boinchome/slots/3/pilot3/pilot/user/atlas/common.py", line 2065, in list_work_dir
[2025-04-18 15:39:07]     _, stdout, stderr = execute(cmd)
[2025-04-18 15:39:07]   File "/tmp/boinchome/slots/3/pilot3/pilot/util/container.py", line 85, in execute
[2025-04-18 15:39:07]     process = subprocess.Popen(
[2025-04-18 15:39:07]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2025-04-18 15:39:07]     self._execute_child(args, executable, preexec_fn, close_fds,
[2025-04-18 15:39:07]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2025-04-18 15:39:07]     raise child_exception_type(errno_num, err_msg, err_filename)
[2025-04-18 15:39:07] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2025-04-18 15:39:07] 
[2025-04-18 15:39:07] None
[2025-04-18 15:39:07] exception has been put in bucket queue belonging to thread 'copytool_out'
[2025-04-18 15:39:07] setting graceful stop in 10 s since there is no point in continuing
[2025-04-18 15:39:07] 2025-04-18 19:36:44,091 | WARNING  | thread 'copytool_out' received an exception from bucket: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2025-04-18 15:39:07] 2025-04-18 19:36:45,815 | INFO     | monitor loop #102: job 0:6604673907 is in state 'failed'
[2025-04-18 15:39:07] 2025-04-18 19:36:45,815 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-04-18 15:39:07] 2025-04-18 19:36:48,320 | INFO     | monitor loop #103: job 0:6604673907 is in state 'failed'
[2025-04-18 15:39:07] 2025-04-18 19:36:48,320 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-04-18 15:39:07] 2025-04-18 19:36:50,823 | INFO     | monitor loop #104: job 0:6604673907 is in state 'failed'
[2025-04-18 15:39:07] 2025-04-18 19:36:50,824 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-04-18 15:39:07] 2025-04-18 19:36:53,327 | INFO     | monitor loop #105: job 0:6604673907 is in state 'failed'
[2025-04-18 15:39:07] 2025-04-18 19:36:53,327 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-04-18 15:39:07] 2025-04-18 19:36:53,787 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-18 15:39:07] 2025-04-18 19:36:53,787 | INFO     | will abort loop
[2025-04-18 15:39:07] 2025-04-18 19:36:53,787 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-18 15:39:07] 2025-04-18 19:36:53,787 | INFO     | found 1 job(s) in 20 queues
[2025-04-18 15:39:07] 2025-04-18 19:36:53,787 | INFO     | aborting job 6604673907
[2025-04-18 15:39:07] 2025-04-18 19:36:53,788 | WARNING  | could not find signal name for signal number None - using SIGTERM
[2025-04-18 15:39:07] 2025-04-18 19:36:53,852 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-18 15:39:07] 2025-04-18 19:36:53,852 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-18 15:39:07] 2025-04-18 19:36:53,852 | INFO     | job 6604673907 has state=failed
[2025-04-18 15:39:07] 2025-04-18 19:36:53,852 | INFO     | preparing for final server update for job 6604673907 in state='failed'
[2025-04-18 15:39:07] 2025-04-18 19:36:53,853 | INFO     | all data control threads have been joined
[2025-04-18 15:39:07] 2025-04-18 19:36:54,792 | INFO     | [job] job monitor thread has finished
[2025-04-18 15:39:07] 2025-04-18 19:36:54,811 | INFO     | [data] copytool_in thread has finished
[2025-04-18 15:39:07] 2025-04-18 19:36:54,811 | INFO     | all payload control threads have been joined
[2025-04-18 15:39:07] 2025-04-18 19:36:54,857 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-18 15:39:07] 2025-04-18 19:36:54,858 | INFO     | [monitor] control thread has ended
[2025-04-18 15:39:07] 2025-04-18 19:36:54,859 | INFO     | [data] control thread has finished
[2025-04-18 15:39:07] 2025-04-18 19:36:54,894 | INFO     | all job control threads have been joined
[2025-04-18 15:39:07] 2025-04-18 19:36:55,117 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-18 15:39:07] 2025-04-18 19:36:55,626 | INFO     | [job] retrieve thread has finished
[2025-04-18 15:39:07] 2025-04-18 19:36:55,818 | INFO     | [payload] control thread has finished
[2025-04-18 15:39:07] 2025-04-18 19:36:55,899 | INFO     | [job] control thread has finished
[2025-04-18 15:39:07] 2025-04-18 19:36:55,959 | INFO     | [payload] failed_post thread has finished
[2025-04-18 15:39:07] 2025-04-18 19:36:55,961 | INFO     | [job] validate thread has finished
[2025-04-18 15:39:07] 2025-04-18 19:36:56,074 | INFO     | [job] create_data_payload thread has finished
[2025-04-18 15:39:07] 2025-04-18 19:36:56,291 | INFO     | [payload] validate_pre thread has finished
[2025-04-18 15:39:07] 2025-04-18 19:36:56,390 | INFO     | [payload] validate_post thread has finished
[2025-04-18 15:39:07] 2025-04-18 19:36:57,175 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-18 15:39:07] 2025-04-18 19:36:59,724 | INFO     | [payload] execute_payloads thread has finished
[2025-04-18 15:39:07] 2025-04-18 19:37:01,184 | INFO     | [data] queue_monitor thread has finished
[2025-04-18 15:39:07] 2025-04-18 19:37:02,187 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:37:04,198 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:37:06,209 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:37:08,219 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:37:10,227 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:37:12,239 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:37:14,245 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:37:16,256 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:37:18,274 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:37:20,284 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:37:22,293 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:37:24,305 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:37:26,312 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:37:28,326 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:37:30,337 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:37:32,346 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:37:34,358 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:37:36,368 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:37:38,379 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:37:40,393 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:37:42,404 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:37:44,413 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:37:46,423 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:37:48,433 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:37:50,443 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:37:52,455 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:37:54,466 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:37:56,476 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:37:58,486 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:38:00,496 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:38:02,503 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:38:04,513 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:38:06,524 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:38:08,535 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:38:10,547 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:38:12,553 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:38:14,560 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:38:16,570 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:38:18,581 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:38:20,591 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:38:22,602 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:38:24,613 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:38:26,622 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:38:28,627 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:38:30,637 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:38:32,646 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:38:34,657 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:38:36,670 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:38:38,681 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:38:40,691 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:38:42,703 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:38:44,714 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:38:46,724 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:38:48,729 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:38:48,916 | INFO     | proceeding with final server update
[2025-04-18 15:39:07] 2025-04-18 19:38:48,917 | INFO     | this job has now completed (state=failed)
[2025-04-18 15:39:07] 2025-04-18 19:38:48,917 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-18 15:39:07] 2025-04-18 19:38:48,917 | INFO     | log transfer has not been attempted: IN_PROGRESS
[2025-04-18 15:39:07] 2025-04-18 19:38:48,917 | INFO     | job 6604673907 has state 'failed' - writing heartbeat
[2025-04-18 15:39:07] 2025-04-18 19:38:48,918 | INFO     | payload/TRF did not report the number of read events
[2025-04-18 15:39:07] 2025-04-18 19:38:48,927 | INFO     | executing command: lscpu
[2025-04-18 15:39:07]   File "/tmp/boinchome/slots/3/pilot3/pilot/common/exception.py", line 466, in run
[2025-04-18 15:39:07]     self._target(**self.kwargs)
[2025-04-18 15:39:07]   File "/tmp/boinchome/slots/3/pilot3/pilot/control/job.py", line 2651, in queue_monitor
[2025-04-18 15:39:07]     update_server(job, args)
[2025-04-18 15:39:07]   File "/tmp/boinchome/slots/3/pilot3/pilot/control/job.py", line 2700, in update_server
[2025-04-18 15:39:07]     send_state(job, args, job.state, metadata=metadata)
[2025-04-18 15:39:07]   File "/tmp/boinchome/slots/3/pilot3/pilot/control/job.py", line 431, in send_state
[2025-04-18 15:39:07]     data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2025-04-18 15:39:07]   File "/tmp/boinchome/slots/3/pilot3/pilot/control/job.py", line 758, in get_data_structure
[2025-04-18 15:39:07]     cpumodel, cpu_mhz = get_cpu_info(cpumodel)  # add the CPU cores if not present
[2025-04-18 15:39:07]   File "/tmp/boinchome/slots/3/pilot3/pilot/util/workernode.py", line 368, in get_cpu_info
[2025-04-18 15:39:07]     ec, stdout = lscpu()
[2025-04-18 15:39:07]   File "/tmp/boinchome/slots/3/pilot3/pilot/util/workernode.py", line 347, in lscpu
[2025-04-18 15:39:07]     ec, stdout, _ = execute(cmd)
[2025-04-18 15:39:07]   File "/tmp/boinchome/slots/3/pilot3/pilot/util/container.py", line 85, in execute
[2025-04-18 15:39:07]     process = subprocess.Popen(
[2025-04-18 15:39:07]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2025-04-18 15:39:07]     self._execute_child(args, executable, preexec_fn, close_fds,
[2025-04-18 15:39:07]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2025-04-18 15:39:07]     raise child_exception_type(errno_num, err_msg, err_filename)
[2025-04-18 15:39:07] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(107, 'Transport endpoint is not connected'), <traceback object at 0x7fd5974a1540>)
[2025-04-18 15:39:07] Traceback (most recent call last):
[2025-04-18 15:39:07]   File "/tmp/boinchome/slots/3/pilot3/pilot/common/exception.py", line 466, in run
[2025-04-18 15:39:07]     self._target(**self.kwargs)
[2025-04-18 15:39:07]   File "/tmp/boinchome/slots/3/pilot3/pilot/control/job.py", line 2651, in queue_monitor
[2025-04-18 15:39:07]     update_server(job, args)
[2025-04-18 15:39:07]   File "/tmp/boinchome/slots/3/pilot3/pilot/control/job.py", line 2700, in update_server
[2025-04-18 15:39:07]     send_state(job, args, job.state, metadata=metadata)
[2025-04-18 15:39:07]   File "/tmp/boinchome/slots/3/pilot3/pilot/control/job.py", line 431, in send_state
[2025-04-18 15:39:07]     data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2025-04-18 15:39:07]   File "/tmp/boinchome/slots/3/pilot3/pilot/control/job.py", line 758, in get_data_structure
[2025-04-18 15:39:07]     cpumodel, cpu_mhz = get_cpu_info(cpumodel)  # add the CPU cores if not present
[2025-04-18 15:39:07]   File "/tmp/boinchome/slots/3/pilot3/pilot/util/workernode.py", line 368, in get_cpu_info
[2025-04-18 15:39:07]     ec, stdout = lscpu()
[2025-04-18 15:39:07]   File "/tmp/boinchome/slots/3/pilot3/pilot/util/workernode.py", line 347, in lscpu
[2025-04-18 15:39:07]     ec, stdout, _ = execute(cmd)
[2025-04-18 15:39:07]   File "/tmp/boinchome/slots/3/pilot3/pilot/util/container.py", line 85, in execute
[2025-04-18 15:39:07]     process = subprocess.Popen(
[2025-04-18 15:39:07]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2025-04-18 15:39:07]     self._execute_child(args, executable, preexec_fn, close_fds,
[2025-04-18 15:39:07]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2025-04-18 15:39:07]     raise child_exception_type(errno_num, err_msg, err_filename)
[2025-04-18 15:39:07] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2025-04-18 15:39:07] 
[2025-04-18 15:39:07] None
[2025-04-18 15:39:07] exception has been put in bucket queue belonging to thread 'queue_monitor'
[2025-04-18 15:39:07] setting graceful stop in 10 s since there is no point in continuing
[2025-04-18 15:39:07] 2025-04-18 19:38:50,741 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:38:52,751 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:38:54,762 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:38:56,773 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:38:58,785 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140555508270912)>', '<ExcThread(queue_monitor, started 140555036104448)>']
[2025-04-18 15:39:07] 2025-04-18 19:39:00,796 | INFO     | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 140555508270912)>'])
[2025-04-18 15:39:07] 2025-04-18 19:39:05,822 | INFO     | all workflow threads have been joined
[2025-04-18 15:39:07] 2025-04-18 19:39:05,823 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-18 15:39:07] 2025-04-18 19:39:05,823 | INFO     | traces error code: 0
[2025-04-18 15:39:07] 2025-04-18 19:39:05,823 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-18 15:39:07] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-04-18 15:39:07]  ==== pilot stdout END ====
[2025-04-18 15:39:07] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-04-18 15:39:07]  ==== wrapper stdout RESUME ====
[2025-04-18 15:39:07] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-04-18 15:39:07]  pilotpid: 90386
[2025-04-18 15:39:07] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-04-18 15:39:07]  Pilot exit status: 0
[2025-04-18 15:39:07] ./runpilot2-wrapper.sh: line 1045: /usr/bin/cat: Transport endpoint is not connected
[2025-04-18 15:39:07] ./runpilot2-wrapper.sh: line 1045: /usr/bin/cut: Transport endpoint is not connected
[2025-04-18 15:39:07] ./runpilot2-wrapper.sh: line 1045: xargs: command not found
[2025-04-18 15:39:07] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-04-18 15:39:07]  pandaids: 
[2025-04-18 15:39:07] ./runpilot2-wrapper.sh: line 546: /usr/bin/ps: Transport endpoint is not connected
[2025-04-18 15:39:07] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-04-18 15:39:07]  No supervise_pilot CHILD process found
[2025-04-18 15:39:07] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-04-18 15:39:07]  Test setup, not cleaning
[2025-04-18 15:39:07] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-04-18 15:39:07]  apfmon messages muted
[2025-04-18 15:39:07] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-04-18 15:39:07]  ==== wrapper stdout END ====
[2025-04-18 15:39:07] ./runpilot2-wrapper.sh: line 10: /usr/bin/date: Transport endpoint is not connected
[2025-04-18 15:39:07]  ==== wrapper stderr END ====
[2025-04-18 15:39:07]  *** Error codes and diagnostics ***
[2025-04-18 15:39:07]  *** Listing of results directory ***
[2025-04-18 15:39:07] total 220860
[2025-04-18 15:39:07] -rw-r--r-- 1 boincer umatlas    495897 Apr 16 19:28 pilot3.tar.gz
[2025-04-18 15:39:07] -rw-r--r-- 1 boincer umatlas      5111 Apr 16 19:35 queuedata.json
[2025-04-18 15:39:07] -rwx------ 1 boincer umatlas     37140 Apr 16 19:36 runpilot2-wrapper.sh
[2025-04-18 15:39:07] -rw-r--r-- 1 boincer umatlas       100 Apr 18 15:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-18 15:39:07] -rwxr-xr-x 1 boincer umatlas      7986 Apr 18 15:16 run_atlas
[2025-04-18 15:39:07] -rw-r--r-- 1 boincer umatlas       105 Apr 18 15:16 job.xml
[2025-04-18 15:39:07] -rw-r--r-- 2 boincer umatlas 222028380 Apr 18 15:16 EVNT.44075481._001850.pool.root.1
[2025-04-18 15:39:07] -rw-r--r-- 2 boincer umatlas     17569 Apr 18 15:16 start_atlas.sh
[2025-04-18 15:39:07] drwxrwx--x 2 boincer umatlas      4096 Apr 18 15:16 shared
[2025-04-18 15:39:07] -rw-r--r-- 2 boincer umatlas    508895 Apr 18 15:16 input.tar.gz
[2025-04-18 15:39:07] -rw-r--r-- 1 boincer umatlas         0 Apr 18 15:16 boinc_lockfile
[2025-04-18 15:39:07] -rw-r--r-- 1 boincer umatlas      2579 Apr 18 15:16 pandaJob.out
[2025-04-18 15:39:07] -rw------- 1 boincer umatlas       467 Apr 18 15:16 setup.sh.local
[2025-04-18 15:39:07] -rw------- 1 boincer umatlas    991292 Apr 18 15:17 agis_schedconf.cvmfs.json
[2025-04-18 15:39:07] -rw------- 1 boincer umatlas   1618536 Apr 18 15:17 agis_ddmendpoints.agis.ALL.json
[2025-04-18 15:39:07] drwx------ 4 boincer umatlas      4096 Apr 18 15:17 pilot3
[2025-04-18 15:39:07] -rw------- 1 boincer umatlas       707 Apr 18 15:20 heartbeat.json
[2025-04-18 15:39:07] -rw-r--r-- 1 boincer umatlas      6383 Apr 18 15:28 init_data.xml
[2025-04-18 15:39:07] -rw------- 1 boincer umatlas      1061 Apr 18 15:36 memory_monitor_summary.json
[2025-04-18 15:39:07] drwxrwx--- 2 boincer umatlas      4096 Apr 18 15:36 PanDA_Pilot-6604673907
[2025-04-18 15:39:07] -rw------- 1 boincer umatlas        95 Apr 18 15:36 pilot_heartbeat.json
[2025-04-18 15:39:07] -rw-r--r-- 1 boincer umatlas       527 Apr 18 15:36 boinc_task_state.xml
[2025-04-18 15:39:07] -rw-r--r-- 1 boincer umatlas        25 Apr 18 15:39 wrapper_checkpoint.txt
[2025-04-18 15:39:07] -rw-r--r-- 1 boincer umatlas      8192 Apr 18 15:39 boinc_mmap_file
[2025-04-18 15:39:07] -rw------- 1 boincer umatlas    132255 Apr 18 15:39 pilotlog.txt
[2025-04-18 15:39:07] -rw------- 1 boincer umatlas    156852 Apr 18 15:39 log.44075483._047319.job.log.1
[2025-04-18 15:39:07] -rw-r--r-- 1 boincer umatlas       428 Apr 18 15:39 runtime_log
[2025-04-18 15:39:07] -rw------- 1 boincer umatlas       629 Apr 18 15:39 tr7MDmFURP7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmSTbLDm8EDaAo.diag
[2025-04-18 15:39:07] -rw-r--r-- 1 boincer umatlas     11706 Apr 18 15:39 runtime_log.err
[2025-04-18 15:39:07] -rw-r--r-- 1 boincer umatlas     27766 Apr 18 15:39 stderr.txt
[2025-04-18 15:39:07] No HITS result produced
[2025-04-18 15:39:07]  *** Contents of shared directory: ***
[2025-04-18 15:39:07] total 217352
[2025-04-18 15:39:07] -rw-r--r-- 2 boincer umatlas 222028380 Apr 18 15:16 ATLAS.root_0
[2025-04-18 15:39:07] -rw-r--r-- 2 boincer umatlas     17569 Apr 18 15:16 start_atlas.sh
[2025-04-18 15:39:07] -rw-r--r-- 2 boincer umatlas    508895 Apr 18 15:16 input.tar.gz
15:39:08 (65111): run_atlas exited; CPU time 211.817905
15:39:08 (65111): called boinc_finish(0)

</stderr_txt>
<message>
upload failure: <file_xfer_error>
  <file_name>tr7MDmFURP7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmSTbLDm8EDaAo_1_r241713176_ATLAS_result</file_name>
  <error_code>-161 (not found)</error_code>
</file_xfer_error>

</message>
]]>

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