Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-18 20:11:44 (67774): Detected: vboxwrapper 26206
2025-04-18 20:11:44 (67774): Detected: BOINC client v8.0.4
2025-04-18 20:11:44 (67774): Detected: VirtualBox VboxManage Interface (Version: 7.0.22)
2025-04-18 20:11:44 (67774): Detected: Sandbox Configuration Enabled
2025-04-18 20:11:44 (67774): Successfully copied 'init_data.xml' to the shared directory.
2025-04-18 20:11:44 (67774): Create VM. (boinc_15d40545a43cbf3e, slot#1)
2025-04-18 20:11:45 (67774): Setting Memory Size for VM. (4600MB)
2025-04-18 20:11:45 (67774): Setting CPU Count for VM. (6)
2025-04-18 20:11:45 (67774): Setting Chipset Options for VM.
2025-04-18 20:11:45 (67774): Setting Graphics Controller Options for VM.
2025-04-18 20:11:45 (67774): Setting Boot Options for VM.
2025-04-18 20:11:45 (67774): Setting Network Configuration for NAT.
2025-04-18 20:11:45 (67774): Enabling VM Network Access.
2025-04-18 20:11:46 (67774): Disabling USB Support for VM.
2025-04-18 20:11:46 (67774): Disabling COM Port Support for VM.
2025-04-18 20:11:46 (67774): Disabling Audio Support for VM.
2025-04-18 20:11:46 (67774): Disabling Clipboard Support for VM.
2025-04-18 20:11:46 (67774): Disabling Drag and Drop Support for VM.
2025-04-18 20:11:46 (67774): Adding storage controller(s) to VM.
2025-04-18 20:11:46 (67774): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-18 20:11:48 (67774): Adding VirtualBox Guest Additions to VM.
2025-04-18 20:11:48 (67774): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-18 20:11:48 (67774): forwarding host port 54157 to guest port 80
2025-04-18 20:11:49 (67774): Enabling remote desktop for VM.
2025-04-18 20:11:49 (67774): Enabling shared directory for VM.
2025-04-18 20:11:49 (67774): Starting VM using VBoxManage interface. (boinc_15d40545a43cbf3e, slot#1)
2025-04-18 20:11:55 (67774): Successfully started VM. (PID = '67855')
2025-04-18 20:11:55 (67774): Reporting VM Process ID to BOINC.
2025-04-18 20:11:55 (67774): Guest Log: BIOS: VirtualBox 7.0.22
2025-04-18 20:11:55 (67774): Guest Log: CPUID EDX: 0x178bfbff
2025-04-18 20:11:55 (67774): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-18 20:11:55 (67774): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-18 20:11:55 (67774): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-18 20:11:55 (67774): Detected: Web Application Enabled (http://localhost:54157)
2025-04-18 20:11:55 (67774): Detected: Remote Desktop Enabled (localhost:62968)
2025-04-18 20:11:55 (67774): Preference change detected
2025-04-18 20:11:55 (67774): Setting CPU throttle for VM. (100%)
2025-04-18 20:11:55 (67774): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-18 20:11:57 (67774): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-18 20:11:57 (67774): Guest Log: BIOS: Booting from Hard Disk...
2025-04-18 20:12:01 (67774): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-18 20:12:01 (67774): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-18 20:12:01 (67774): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-18 20:12:01 (67774): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-18 20:12:01 (67774): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-18 20:12:01 (67774): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-18 20:12:01 (67774): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-18 20:12:01 (67774): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-18 20:12:01 (67774): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-18 20:12:01 (67774): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-18 20:12:01 (67774): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-18 20:12:01 (67774): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-18 20:12:01 (67774): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-18 20:12:01 (67774): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-18 20:12:01 (67774): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-18 20:12:01 (67774): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-18 20:12:01 (67774): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-18 20:12:01 (67774): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-18 20:12:01 (67774): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-18 20:12:01 (67774): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-18 20:12:01 (67774): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-18 20:12:01 (67774): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-18 20:12:01 (67774): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-18 20:12:01 (67774): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-18 20:12:01 (67774): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-18 20:12:01 (67774): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-18 20:12:01 (67774): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-18 20:12:01 (67774): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-18 20:12:01 (67774): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-18 20:12:01 (67774): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-18 20:12:01 (67774): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-18 20:12:01 (67774): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-18 20:12:14 (67774): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-18 20:12:14 (67774): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-18 20:12:31 (67774): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-18 20:12:31 (67774): Guest Log: 00:00:00.000326 main     Log opened 2025-04-18T18:12:28.603482000Z
2025-04-18 20:12:31 (67774): Guest Log: 00:00:00.000598 main     OS Product: Linux
2025-04-18 20:12:31 (67774): Guest Log: 00:00:00.000715 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-18 20:12:31 (67774): Guest Log: 00:00:00.000833 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-18 20:12:31 (67774): Guest Log: 00:00:00.000952 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-18 20:12:31 (67774): Guest Log: 00:00:00.000954 main     Process ID: 1332
2025-04-18 20:12:31 (67774): Guest Log: 00:00:00.000955 main     Package type: LINUX_64BITS_GENERIC
2025-04-18 20:12:31 (67774): Guest Log: 00:00:00.004725 main     5.2.32 r132073 started. Verbose level = 0
2025-04-18 20:12:32 (67774): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-18 20:12:32 (67774): Guest Log: [INFO] Mounting shared directory
2025-04-18 20:12:32 (67774): Guest Log: [INFO] Checking for init_data.xml
2025-04-18 20:13:00 (67774): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-18 20:13:00 (67774): Guest Log: [INFO] Detected branch: prod
2025-04-18 20:13:00 (67774): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-18 20:13:00 (67774): Guest Log: Copying input files
2025-04-18 20:13:02 (67774): Guest Log: Copied input files into RunAtlas.
2025-04-18 20:13:02 (67774): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-18 20:13:02 (67774): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-18 20:13:02 (67774): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-18 20:13:02 (67774): Guest Log: Further information can be found at the LHC@home message board.
2025-04-18 20:13:17 (67774): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-18 20:13:18 (67774): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-18 20:13:18 (67774): Guest Log: 2.6.3.0 1612 0 32280 145010 4 1 3117322 4096000 0 65024 0 0 n/a 1 1 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
2025-04-18 20:13:19 (67774): Guest Log: copied the webapp to /var/www
2025-04-18 20:13:19 (67774): Guest Log: ATHENA_PROC_NUMBER=6
2025-04-18 20:13:19 (67774): Guest Log: ATHENA_CORE_NUMBER=6
2025-04-18 20:13:19 (67774): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-18 20:13:19 (67774): Guest Log:  *** Starting ATLAS job. (PandaID=6606295698 taskID=44075483) ***
2025-04-18 21:51:55 (67774): Status Report: Elapsed Time: '6000.000000'
2025-04-18 21:51:55 (67774): Status Report: CPU Time: '21623.850000'
2025-04-18 23:31:55 (67774): Status Report: Elapsed Time: '12000.000000'
2025-04-18 23:31:55 (67774): Status Report: CPU Time: '46356.470000'
2025-04-18 23:34:34 (67774): Guest Log:  *** Job finished ***
2025-04-18 23:34:34 (67774): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-18 23:34:34 (67774): Guest Log: 2025-04-18 21:34:15,245 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-04-18 23:34:34 (67774): Guest Log: 2025-04-18 21:34:15,449 | INFO     | [job] queue monitor thread has finished
2025-04-18 23:34:34 (67774): Guest Log: 2025-04-18 21:34:19,259 | INFO     | [data] queue_monitor thread has finished
2025-04-18 23:34:34 (67774): Guest Log: 2025-04-18 21:34:20,618 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140230175913792)>', '<ExcThread(monitor, started 140229574899456)>']
2025-04-18 23:34:34 (67774): Guest Log: 2025-04-18 21:34:20,664 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-18 23:34:34 (67774): Guest Log: 2025-04-18 21:34:20,664 | INFO     | [monitor] control thread has ended
2025-04-18 23:34:34 (67774): Guest Log: 2025-04-18 21:34:25,624 | INFO     | all workflow threads have been joined
2025-04-18 23:34:34 (67774): Guest Log: 2025-04-18 21:34:25,624 | INFO     | end of generic workflow (traces error code: 0)
2025-04-18 23:34:34 (67774): Guest Log: 2025-04-18 21:34:25,625 | INFO     | traces error code: 0
2025-04-18 23:34:34 (67774): Guest Log: 2025-04-18 21:34:25,625 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-18 23:34:34 (67774): Guest Log: 2025-04-18 21:34:25,793 [wrapper] ==== pilot stdout END ====
2025-04-18 23:34:34 (67774): Guest Log: 2025-04-18 21:34:25,803 [wrapper] ==== wrapper stdout RESUME ====
2025-04-18 23:34:34 (67774): Guest Log: 2025-04-18 21:34:25,888 [wrapper] pilotpid: 5984
2025-04-18 23:34:34 (67774): Guest Log: 2025-04-18 21:34:25,900 [wrapper] Pilot exit status: 0
2025-04-18 23:34:34 (67774): Guest Log: 2025-04-18 21:34:26,289 [wrapper] pandaids: 6606295698
2025-04-18 23:34:34 (67774): Guest Log: 2025-04-18 21:34:26,552 [wrapper] cleanup supervisor_pilot  7054 5985
2025-04-18 23:34:34 (67774): Guest Log: 2025-04-18 21:34:26,636 [wrapper] Test setup, not cleaning
2025-04-18 23:34:34 (67774): Guest Log: 2025-04-18 21:34:26,653 [wrapper] apfmon messages muted
2025-04-18 23:34:34 (67774): Guest Log: 2025-04-18 21:34:26,738 [wrapper] ==== wrapper stdout END ====
2025-04-18 23:34:34 (67774): Guest Log: 2025-04-18 21:34:26,754 [wrapper] ==== wrapper stderr END ====
2025-04-18 23:34:34 (67774): Guest Log:  *** Error codes and diagnostics ***
2025-04-18 23:34:34 (67774): Guest Log:     "exeErrorCode": 0,
2025-04-18 23:34:34 (67774): Guest Log:     "exeErrorDiag": "",
2025-04-18 23:34:34 (67774): Guest Log:     "pilotErrorCode": 0,
2025-04-18 23:34:34 (67774): Guest Log:     "pilotErrorDiag": "",
2025-04-18 23:34:34 (67774): Guest Log:  *** Listing of results directory ***
2025-04-18 23:34:34 (67774): Guest Log: total 198928
2025-04-18 23:34:34 (67774): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 18 10:19 queuedata.json
2025-04-18 23:34:34 (67774): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 18 10:20 runpilot2-wrapper.sh
2025-04-18 23:34:34 (67774): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 18 10:20 pilot3.tar.gz
2025-04-18 23:34:34 (67774): Guest Log: -rw-r-----. 1 atlas atlas     17569 Apr 18 18:12 start_atlas.sh
2025-04-18 23:34:34 (67774): Guest Log: -rw-r-----. 1 atlas atlas    508889 Apr 18 18:12 input.tar.gz
2025-04-18 23:34:34 (67774): Guest Log: -rw-r--r--. 1 atlas atlas      7861 Apr 18 18:12 init_data.xml
2025-04-18 23:34:34 (67774): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 18 18:12 EVNT.44075481._002642.pool.root.1 -> /data/./ATLAS.root_0
2025-04-18 23:34:34 (67774): Guest Log: -rw-r--r--. 1 atlas atlas      2579 Apr 18 18:13 pandaJob.out
2025-04-18 23:34:34 (67774): Guest Log: -rw-------. 1 atlas atlas       424 Apr 18 18:13 setup.sh.local
2025-04-18 23:34:34 (67774): Guest Log: -rw-------. 1 atlas atlas    991292 Apr 18 18:15 agis_schedconf.cvmfs.json
2025-04-18 23:34:34 (67774): Guest Log: drwx------. 4 atlas atlas      4096 Apr 18 18:15 pilot3
2025-04-18 23:34:34 (67774): Guest Log: -rw-------. 1 atlas atlas 197899417 Apr 18 21:31 HITS.44075483._067955.pool.root.1
2025-04-18 23:34:34 (67774): Guest Log: -rw-------. 1 atlas atlas      1034 Apr 18 21:32 memory_monitor_summary.json
2025-04-18 23:34:34 (67774): Guest Log: -rw-------. 1 atlas atlas   1618536 Apr 18 21:32 agis_ddmendpoints.agis.ALL.json
2025-04-18 23:34:34 (67774): Guest Log: -rw-------. 1 atlas atlas    299808 Apr 18 21:32 log.44075483._067955.job.log.tgz.1
2025-04-18 23:34:34 (67774): Guest Log: -rw-------. 1 atlas atlas        95 Apr 18 21:33 pilot_heartbeat.json
2025-04-18 23:34:34 (67774): Guest Log: -rw-------. 1 atlas atlas      7733 Apr 18 21:34 heartbeat.json
2025-04-18 23:34:34 (67774): Guest Log: -rw-------. 1 atlas atlas      4413 Apr 18 21:34 pilotlog.txt
2025-04-18 23:34:34 (67774): Guest Log: -rw-------. 1 atlas atlas    702764 Apr 18 21:34 log.44075483._067955.job.log.1
2025-04-18 23:34:34 (67774): Guest Log: -rw-------. 1 atlas atlas       357 Apr 18 21:34 output.list
2025-04-18 23:34:34 (67774): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 18 21:34 runtime_log
2025-04-18 23:34:34 (67774): Guest Log: -rw-------. 1 atlas atlas   1024000 Apr 18 21:34 result.tar.gz
2025-04-18 23:34:34 (67774): Guest Log: -rw-r--r--. 1 atlas atlas     10918 Apr 18 21:34 runtime_log.err
2025-04-18 23:34:34 (67774): Guest Log: -rw-------. 1 atlas atlas       649 Apr 18 21:34 aaoLDmU0xP7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmv4eLDmXRQ5Dn.diag
2025-04-18 23:34:34 (67774): Guest Log: Looking for outputfile HITS.44075483._067955.pool.root.1
2025-04-18 23:34:34 (67774): Guest Log: HITS file was successfully produced
2025-04-18 23:34:34 (67774): Guest Log: -rw-------. 1 atlas atlas 197899417 Apr 18 21:31 /home/atlas/RunAtlas/HITS.44075483._067955.pool.root.1
2025-04-18 23:34:35 (67774): Guest Log: Successfully finished the ATLAS job!
2025-04-18 23:34:35 (67774): Guest Log: Copying the results back to the shared directory!
2025-04-18 23:34:35 (67774): Guest Log:  *** Contents of shared directory: ***
2025-04-18 23:34:35 (67774): Guest Log: total 218452
2025-04-18 23:34:35 (67774): Guest Log: -rw-rw----. 1 root root 222126497 Apr 18 18:11 ATLAS.root_0
2025-04-18 23:34:35 (67774): Guest Log: -rw-rw-r--. 1 root root      7861 Apr 18 18:11 init_data.xml
2025-04-18 23:34:35 (67774): Guest Log: -rw-rw----. 1 root root    508889 Apr 18 18:11 input.tar.gz
2025-04-18 23:34:35 (67774): Guest Log: -rw-r--r--. 1 root root   1024000 Apr 18  2025 result.tar.gz
2025-04-18 23:34:35 (67774): Guest Log: -rw-rw----. 1 root root     17569 Apr 18 18:11 start_atlas.sh
2025-04-18 23:34:35 (67774): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-18 23:34:35 (67774): VM Completion File Detected.
2025-04-18 23:34:35 (67774): Powering off VM.
2025-04-18 23:34:36 (67774): Successfully stopped VM.
2025-04-18 23:34:36 (67774): Deregistering VM. (boinc_15d40545a43cbf3e, slot#1)
2025-04-18 23:34:36 (67774): Removing network bandwidth throttle group from VM.
2025-04-18 23:34:36 (67774): Removing VM from VirtualBox.
23:34:42 (67774): called boinc_finish(0)

</stderr_txt>
]]>

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