Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:25:54 (24512): wrapper (7.7.26015): starting
14:25:54 (24512): wrapper: running run_atlas (--nthreads 12)
[2025-04-18 14:25:54] Arguments: --nthreads 12
[2025-04-18 14:25:54] Threads: 12
[2025-04-18 14:25:54] Checking for CVMFS
[2025-04-18 14:25:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-18 14:25:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-18 14:25:54] Running cvmfs_config stat atlas.cern.ch
[2025-04-18 14:25:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-18 14:25:55] 2.11.2.0 3078 57598 145264 145011 2 55 18583690 20275201 1 130560 0 24696596 99.985 7139449 58450 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-18 14:25:55] CVMFS is ok
[2025-04-18 14:25:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-18 14:25:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-18 14:25:55] Further information can be found at the LHC@home message board.
[2025-04-18 14:25:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-18 14:25:55] Checking for apptainer binary...
[2025-04-18 14:25:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-18 14:25:55] Running /usr/bin/apptainer --version
[2025-04-18 14:25:55] apptainer version 1.3.2-1.el7
[2025-04-18 14:25:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-18 14:25:56] c-115-41.aglt2.org
[2025-04-18 14:25:56] apptainer works
[2025-04-18 14:25:56] Set ATHENA_PROC_NUMBER=12
[2025-04-18 14:25:56] Set ATHENA_CORE_NUMBER=12
[2025-04-18 14:25:56] Starting ATLAS job with PandaID=6606554662
[2025-04-18 14:25:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-18 15:38:19]  *** The last 200 lines of the pilot log: ***
[2025-04-18 15:38:19]  guid=6fe798f1-332c-49f1-8b88-2c59d2fdcc91
[2025-04-18 15:38:19]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-04-18 15:38:19]  is_altstaged=None
[2025-04-18 15:38:19]  is_tar=False
[2025-04-18 15:38:19]  lfn=log.44075483._070374.job.log.tgz.1
[2025-04-18 15:38:19]  mtime=0
[2025-04-18 15:38:19]  protocol_id=None
[2025-04-18 15:38:19]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-18 15:38:19]  replicas=None
[2025-04-18 15:38:19]  scope=mc23_13p6TeV
[2025-04-18 15:38:19]  status=None
[2025-04-18 15:38:19]  status_code=0
[2025-04-18 15:38:19]  storage_token=
[2025-04-18 15:38:19]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6606554662/log.44075483._070374.job.log.tgz.1
[2025-04-18 15:38:19]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fe/d2/log.44075483._070374.job.log.tgz.1
[2025-04-18 15:38:19]  workdir=None
[2025-04-18 15:38:19] ]
[2025-04-18 15:38:19] 2025-04-18 19:37:51,578 | INFO     | transferring file log.44075483._070374.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6606554662/log.44075483._070374.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-04-18 15:38:19] 2025-04-18 19:37:51,578 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6606554662/log.44075483._070374.job.log.tgz.1 /tmp/boinchome/slots/0/log.44075483._070374.job
[2025-04-18 15:38:19] 2025-04-18 19:37:51,602 | INFO     | adding to output.list: log.44075483._070374.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fe/d2/log.44075483._070374.job.log.tg
[2025-04-18 15:38:19] 2025-04-18 19:37:51,602 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-18 15:38:19] 2025-04-18 19:37:51,603 | INFO     | summary of transferred files:
[2025-04-18 15:38:19] 2025-04-18 19:37:51,603 | INFO     |  -- lfn=log.44075483._070374.job.log.tgz.1, status_code=0, status=transferred
[2025-04-18 15:38:19] 2025-04-18 19:37:51,603 | INFO     | stage-out finished correctly
[2025-04-18 15:38:19] 2025-04-18 19:37:52,269 | INFO     | monitor loop #323: job 0:6606554662 is in state 'finished'
[2025-04-18 15:38:19] 2025-04-18 19:37:52,269 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-18 15:38:19] 2025-04-18 19:37:53,097 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-18 15:38:19] 2025-04-18 19:37:54,301 | INFO     | job 6606554662 has state=finished
[2025-04-18 15:38:19] 2025-04-18 19:37:54,302 | INFO     | preparing for final server update for job 6606554662 in state='finished'
[2025-04-18 15:38:19] 2025-04-18 19:37:54,302 | INFO     | this job has now completed (state=finished)
[2025-04-18 15:38:19] 2025-04-18 19:37:54,302 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-18 15:38:19] 2025-04-18 19:37:54,303 | INFO     | log transfer has been attempted: DONE
[2025-04-18 15:38:19] 2025-04-18 19:37:54,303 | INFO     | job 6606554662 has finished - writing final server update
[2025-04-18 15:38:19] 2025-04-18 19:37:54,303 | INFO     | total number of processed events: 400 (read)
[2025-04-18 15:38:19] 2025-04-18 19:37:54,305 | INFO     | executing command: lscpu
[2025-04-18 15:38:19] 2025-04-18 19:37:54,335 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-18 15:38:19] 2025-04-18 19:37:54,772 | INFO     | monitor loop #324: job 0:6606554662 is in state 'finished'
[2025-04-18 15:38:19] 2025-04-18 19:37:54,779 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-18 15:38:19] 2025-04-18 19:37:57,282 | INFO     | monitor loop #325: job 0:6606554662 is in state 'finished'
[2025-04-18 15:38:19] 2025-04-18 19:37:57,282 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-18 15:38:19] 2025-04-18 19:37:59,250 | INFO     | CPU arch script returned: x86-64-v2
[2025-04-18 15:38:19] 2025-04-18 19:37:59,250 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6606554662/memory_monitor_summary.json (trf name=prmon)
[2025-04-18 15:38:19] 2025-04-18 19:37:59,251 | INFO     | extracted standard info from prmon json
[2025-04-18 15:38:19] 2025-04-18 19:37:59,251 | INFO     | extracted standard memory fields from prmon json
[2025-04-18 15:38:19] 2025-04-18 19:37:59,252 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-18 15:38:19] 2025-04-18 19:37:59,252 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-18 15:38:19] 2025-04-18 19:37:59,252 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-18 15:38:19] 2025-04-18 19:37:59,255 | INFO     | fitting pss+swap vs Time
[2025-04-18 15:38:19] 2025-04-18 19:37:59,255 | INFO     | sum of square deviations: 77515872.0
[2025-04-18 15:38:19] 2025-04-18 19:37:59,255 | INFO     | sum of deviations: 20549446308.999996
[2025-04-18 15:38:19] 2025-04-18 19:37:59,256 | INFO     | mean x: 1745002994.0
[2025-04-18 15:38:19] 2025-04-18 19:37:59,256 | INFO     | mean y: 2550857.8095238097
[2025-04-18 15:38:19] 2025-04-18 19:37:59,256 | INFO     | -- intersect: -462597487160.8203
[2025-04-18 15:38:19] 2025-04-18 19:37:59,256 | INFO     | intersect: -462597487160.8203
[2025-04-18 15:38:19] 2025-04-18 19:37:59,256 | INFO     | chi2: 2.5802577760955394
[2025-04-18 15:38:19] 2025-04-18 19:37:59,257 | INFO     | -- intersect: -462597487160.8203
[2025-04-18 15:38:19] 2025-04-18 19:37:59,257 | INFO     | current memory leak: 265.10 B/s (using 63 data points, chi2=2.58)
[2025-04-18 15:38:19] 2025-04-18 19:37:59,257 | INFO     | ..............................
[2025-04-18 15:38:19] 2025-04-18 19:37:59,257 | INFO     | . Timing measurements:
[2025-04-18 15:38:19] 2025-04-18 19:37:59,257 | INFO     | . get job = 0 s
[2025-04-18 15:38:19] 2025-04-18 19:37:59,257 | INFO     | . initial setup = 2 s
[2025-04-18 15:38:19] 2025-04-18 19:37:59,258 | INFO     | . payload setup = 7 s
[2025-04-18 15:38:19] 2025-04-18 19:37:59,258 | INFO     | . stage-in = 0 s
[2025-04-18 15:38:19] 2025-04-18 19:37:59,258 | INFO     | . payload execution = 4273 s
[2025-04-18 15:38:19] 2025-04-18 19:37:59,258 | INFO     | . stage-out = 0 s
[2025-04-18 15:38:19] 2025-04-18 19:37:59,258 | INFO     | . log creation = 0 s
[2025-04-18 15:38:19] 2025-04-18 19:37:59,258 | INFO     | ..............................
[2025-04-18 15:38:19] 2025-04-18 19:37:59,335 | INFO     | 
[2025-04-18 15:38:19] 2025-04-18 19:37:59,335 | INFO     | job summary report
[2025-04-18 15:38:19] 2025-04-18 19:37:59,336 | INFO     | --------------------------------------------------
[2025-04-18 15:38:19] 2025-04-18 19:37:59,336 | INFO     | PanDA job id: 6606554662
[2025-04-18 15:38:19] 2025-04-18 19:37:59,336 | INFO     | task id: 44075483
[2025-04-18 15:38:19] 2025-04-18 19:37:59,336 | INFO     | errors: (none)
[2025-04-18 15:38:19] 2025-04-18 19:37:59,336 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-18 15:38:19] 2025-04-18 19:37:59,336 | INFO     | pilot state: finished 
[2025-04-18 15:38:19] 2025-04-18 19:37:59,337 | INFO     | transexitcode: 0
[2025-04-18 15:38:19] 2025-04-18 19:37:59,337 | INFO     | exeerrorcode: 0
[2025-04-18 15:38:19] 2025-04-18 19:37:59,337 | INFO     | exeerrordiag: 
[2025-04-18 15:38:19] 2025-04-18 19:37:59,337 | INFO     | exitcode: 0
[2025-04-18 15:38:19] 2025-04-18 19:37:59,337 | INFO     | exitmsg: OK
[2025-04-18 15:38:19] 2025-04-18 19:37:59,337 | INFO     | cpuconsumptiontime: 39442 s
[2025-04-18 15:38:19] 2025-04-18 19:37:59,337 | INFO     | nevents: 400
[2025-04-18 15:38:19] 2025-04-18 19:37:59,338 | INFO     | neventsw: 0
[2025-04-18 15:38:19] 2025-04-18 19:37:59,338 | INFO     | pid: 2224
[2025-04-18 15:38:19] 2025-04-18 19:37:59,338 | INFO     | pgrp: 2224
[2025-04-18 15:38:19] 2025-04-18 19:37:59,338 | INFO     | corecount: 12
[2025-04-18 15:38:19] 2025-04-18 19:37:59,338 | INFO     | event service: False
[2025-04-18 15:38:19] 2025-04-18 19:37:59,338 | INFO     | sizes: {0: 2426823, 5: 2427029, 11: 2427085, 4284: 2452981, 4286: 2461922, 4287: 2461978, 4294: 2462276}
[2025-04-18 15:38:19] 2025-04-18 19:37:59,339 | INFO     | --------------------------------------------------
[2025-04-18 15:38:19] 2025-04-18 19:37:59,339 | INFO     | 
[2025-04-18 15:38:19] 2025-04-18 19:37:59,339 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-04-18 15:38:19] 2025-04-18 19:37:59,362 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-18 15:38:19] 2025-04-18 19:37:59,363 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-18 15:38:19] 2025-04-18 19:37:59,363 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-18 15:38:19] 2025-04-18 19:37:59,363 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-18 15:38:19] 2025-04-18 19:37:59,363 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-18 15:38:19] 2025-04-18 19:37:59,363 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-18 15:38:19] 2025-04-18 19:37:59,364 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-18 15:38:19] 2025-04-18 19:37:59,364 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-18 15:38:19] 2025-04-18 19:37:59,364 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-18 15:38:19] 2025-04-18 19:37:59,364 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-18 15:38:19] 2025-04-18 19:37:59,364 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-18 15:38:19] 2025-04-18 19:37:59,364 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-18 15:38:19] 2025-04-18 19:37:59,365 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-18 15:38:19] 2025-04-18 19:37:59,365 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-18 15:38:19] 2025-04-18 19:37:59,365 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-18 15:38:19] 2025-04-18 19:37:59,365 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-18 15:38:19] 2025-04-18 19:37:59,365 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-18 15:38:19] 2025-04-18 19:37:59,366 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-18 15:38:19] 2025-04-18 19:37:59,366 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-18 15:38:19] 2025-04-18 19:37:59,366 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-18 15:38:19] 2025-04-18 19:37:59,366 | INFO     | job 6606554662 has completed (purged errors)
[2025-04-18 15:38:19] 2025-04-18 19:37:59,366 | INFO     | overall cleanup function is called
[2025-04-18 15:38:19] 2025-04-18 19:38:00,374 | INFO     | --- collectZombieJob: --- 10, [2224]
[2025-04-18 15:38:19] 2025-04-18 19:38:00,374 | INFO     | zombie collector waiting for pid 2224
[2025-04-18 15:38:19] 2025-04-18 19:38:00,374 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-18 15:38:19] 2025-04-18 19:38:00,374 | INFO     | collected zombie processes
[2025-04-18 15:38:19] 2025-04-18 19:38:00,374 | INFO     | will attempt to kill all subprocesses of pid=2224
[2025-04-18 15:38:19] 2025-04-18 19:38:00,465 | INFO     | process IDs to be killed: [2224] (in reverse order)
[2025-04-18 15:38:19] 2025-04-18 19:38:00,517 | WARNING  | found no corresponding commands to process id(s)
[2025-04-18 15:38:19] 2025-04-18 19:38:00,518 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-18 15:38:19] 2025-04-18 19:38:00,522 | INFO     | did not find any defunct processes belonging to 2224
[2025-04-18 15:38:19] 2025-04-18 19:38:00,525 | INFO     | did not find any defunct processes belonging to 2224
[2025-04-18 15:38:19] 2025-04-18 19:38:00,526 | INFO     | ready for new job
[2025-04-18 15:38:19] 2025-04-18 19:38:00,526 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-18 15:38:19] 2025-04-18 19:38:00,527 | INFO     | **************************************
[2025-04-18 15:38:19] 2025-04-18 19:38:00,527 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-18 15:38:19] 2025-04-18 19:38:00,527 | INFO     | **************************************
[2025-04-18 15:38:19] 2025-04-18 19:38:00,527 | INFO     | 
[2025-04-18 15:38:19] 2025-04-18 19:38:00,528 | INFO     | architecture information:
[2025-04-18 15:38:19] 2025-04-18 19:38:00,528 | INFO     | executing command: cat /etc/os-release
[2025-04-18 15:38:19] 2025-04-18 19:38:00,545 | INFO     | cat /etc/os-release:
[2025-04-18 15:38:19] NAME="CentOS Linux"
[2025-04-18 15:38:19] VERSION="7 (Core)"
[2025-04-18 15:38:19] ID="centos"
[2025-04-18 15:38:19] ID_LIKE="rhel fedora"
[2025-04-18 15:38:19] VERSION_ID="7"
[2025-04-18 15:38:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-18 15:38:19] ANSI_COLOR="0;31"
[2025-04-18 15:38:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-18 15:38:19] HOME_URL="https://www.centos.org/"
[2025-04-18 15:38:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-18 15:38:19] 
[2025-04-18 15:38:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-18 15:38:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-18 15:38:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-18 15:38:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-18 15:38:19] 
[2025-04-18 15:38:19] 2025-04-18 19:38:00,545 | INFO     | **************************************
[2025-04-18 15:38:19] 2025-04-18 19:38:01,047 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-04-18 15:38:19] 2025-04-18 19:38:01,063 | INFO     | sufficient remaining disk space (18626904064 B)
[2025-04-18 15:38:19] 2025-04-18 19:38:01,063 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-18 15:38:19] 2025-04-18 19:38:01,064 | INFO     | current server update state: UPDATING_FINAL
[2025-04-18 15:38:19] 2025-04-18 19:38:01,064 | INFO     | update_server=False
[2025-04-18 15:38:19] 2025-04-18 19:38:01,064 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-18 15:38:19] 2025-04-18 19:38:01,064 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-18 15:38:19] 2025-04-18 19:38:01,065 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-18 15:38:19] 2025-04-18 19:38:01,065 | INFO     | aborting loop
[2025-04-18 15:38:19] 2025-04-18 19:38:01,184 | INFO     | all job control threads have been joined
[2025-04-18 15:38:19] 2025-04-18 19:38:01,223 | INFO     | all data control threads have been joined
[2025-04-18 15:38:19] 2025-04-18 19:38:01,901 | INFO     | found 0 job(s) in 20 queues
[2025-04-18 15:38:19] 2025-04-18 19:38:01,902 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-18 15:38:19] 2025-04-18 19:38:01,902 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-18 15:38:19] 2025-04-18 19:38:02,069 | INFO     | [job] retrieve thread has finished
[2025-04-18 15:38:19] 2025-04-18 19:38:02,070 | INFO     | [job] queue monitor thread has finished
[2025-04-18 15:38:19] 2025-04-18 19:38:02,070 | INFO     | [job] job monitor thread has finished
[2025-04-18 15:38:19] 2025-04-18 19:38:02,189 | INFO     | [job] control thread has finished
[2025-04-18 15:38:19] 2025-04-18 19:38:02,195 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-18 15:38:19] 2025-04-18 19:38:02,207 | INFO     | [payload] validate_post thread has finished
[2025-04-18 15:38:19] 2025-04-18 19:38:02,228 | INFO     | [data] control thread has finished
[2025-04-18 15:38:19] 2025-04-18 19:38:02,260 | INFO     | [data] copytool_in thread has finished
[2025-04-18 15:38:19] 2025-04-18 19:38:02,535 | INFO     | all payload control threads have been joined
[2025-04-18 15:38:19] 2025-04-18 19:38:02,636 | INFO     | [payload] failed_post thread has finished
[2025-04-18 15:38:19] 2025-04-18 19:38:02,923 | INFO     | [payload] execute_payloads thread has finished
[2025-04-18 15:38:19] 2025-04-18 19:38:03,228 | INFO     | [job] validate thread has finished
[2025-04-18 15:38:19] 2025-04-18 19:38:03,524 | INFO     | [payload] validate_pre thread has finished
[2025-04-18 15:38:19] 2025-04-18 19:38:03,541 | INFO     | [payload] control thread has finished
[2025-04-18 15:38:19] 2025-04-18 19:38:03,552 | INFO     | [job] create_data_payload thread has finished
[2025-04-18 15:38:19] 2025-04-18 19:38:03,681 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-18 15:38:19] 2025-04-18 19:38:04,200 | INFO     | [data] copytool_out thread has finished
[2025-04-18 15:38:19] 2025-04-18 19:38:07,687 | INFO     | [data] queue_monitor thread has finished
[2025-04-18 15:38:19] 2025-04-18 19:38:11,450 | INFO     | job.realtimelogging is not enabled
[2025-04-18 15:38:19] 2025-04-18 19:38:12,455 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-18 15:38:19] 2025-04-18 19:38:13,925 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140181734217536)>', '<ExcThread(monitor, started 140181021652736)>']
[2025-04-18 15:38:19] 2025-04-18 19:38:13,956 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-18 15:38:19] 2025-04-18 19:38:13,957 | INFO     | [monitor] control thread has ended
[2025-04-18 15:38:19] 2025-04-18 19:38:18,950 | INFO     | all workflow threads have been joined
[2025-04-18 15:38:19] 2025-04-18 19:38:18,951 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-18 15:38:19] 2025-04-18 19:38:18,955 | INFO     | traces error code: 0
[2025-04-18 15:38:19] 2025-04-18 19:38:18,955 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-18 15:38:19] 2025-04-18 19:38:19,047 [wrapper] ==== pilot stdout END ====
[2025-04-18 15:38:19] 2025-04-18 19:38:19,050 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-18 15:38:19] 2025-04-18 19:38:19,054 [wrapper] pilotpid: 28172
[2025-04-18 15:38:19] 2025-04-18 19:38:19,058 [wrapper] Pilot exit status: 0
[2025-04-18 15:38:19] 2025-04-18 19:38:19,074 [wrapper] pandaids: 6606554662
[2025-04-18 15:38:19] 2025-04-18 19:38:19,111 [wrapper] cleanup supervisor_pilot 30557 28173
[2025-04-18 15:38:19] 2025-04-18 19:38:19,115 [wrapper] Test setup, not cleaning
[2025-04-18 15:38:19] 2025-04-18 19:38:19,119 [wrapper] apfmon messages muted
[2025-04-18 15:38:19] 2025-04-18 19:38:19,122 [wrapper] ==== wrapper stdout END ====
[2025-04-18 15:38:19] 2025-04-18 19:38:19,126 [wrapper] ==== wrapper stderr END ====
[2025-04-18 15:38:19]  *** Error codes and diagnostics ***
[2025-04-18 15:38:19]     "exeErrorCode": 0,
[2025-04-18 15:38:19]     "exeErrorDiag": "",
[2025-04-18 15:38:19]     "pilotErrorCode": 0,
[2025-04-18 15:38:19]     "pilotErrorDiag": "",
[2025-04-18 15:38:19]  *** Listing of results directory ***
[2025-04-18 15:38:19] total 407028
[2025-04-18 15:38:19] -rw-r--r-- 1 boincer umatlas    495897 Apr 18 10:26 pilot3.tar.gz
[2025-04-18 15:38:19] -rw-r--r-- 1 boincer umatlas      5111 Apr 18 10:38 queuedata.json
[2025-04-18 15:38:19] -rwx------ 1 boincer umatlas     37140 Apr 18 10:40 runpilot2-wrapper.sh
[2025-04-18 15:38:19] -rw-r--r-- 1 boincer umatlas       100 Apr 18 14:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-18 15:38:19] -rwxr-xr-x 1 boincer umatlas      7986 Apr 18 14:25 run_atlas
[2025-04-18 15:38:19] -rw-r--r-- 1 boincer umatlas       105 Apr 18 14:25 job.xml
[2025-04-18 15:38:19] -rw-r--r-- 2 boincer umatlas 222524727 Apr 18 14:25 EVNT.44075481._002734.pool.root.1
[2025-04-18 15:38:19] -rw-r--r-- 2 boincer umatlas    508891 Apr 18 14:25 input.tar.gz
[2025-04-18 15:38:19] -rw-r--r-- 2 boincer umatlas     17569 Apr 18 14:25 start_atlas.sh
[2025-04-18 15:38:19] drwxrwx--x 2 boincer umatlas      4096 Apr 18 14:25 shared
[2025-04-18 15:38:19] -rw-r--r-- 1 boincer umatlas         0 Apr 18 14:25 boinc_lockfile
[2025-04-18 15:38:19] -rw-r--r-- 1 boincer umatlas      2578 Apr 18 14:25 pandaJob.out
[2025-04-18 15:38:19] -rw------- 1 boincer umatlas       424 Apr 18 14:25 setup.sh.local
[2025-04-18 15:38:19] -rw------- 1 boincer umatlas    991292 Apr 18 14:26 agis_schedconf.cvmfs.json
[2025-04-18 15:38:19] -rw------- 1 boincer umatlas   1618536 Apr 18 14:26 agis_ddmendpoints.agis.ALL.json
[2025-04-18 15:38:19] drwx------ 4 boincer umatlas      4096 Apr 18 14:26 pilot3
[2025-04-18 15:38:19] -rw-r--r-- 1 boincer umatlas      5869 Apr 18 15:37 init_data.xml
[2025-04-18 15:38:19] -rw------- 1 boincer umatlas 188850894 Apr 18 15:37 HITS.44075483._070374.pool.root.1
[2025-04-18 15:38:19] -rw-r--r-- 1 boincer umatlas       529 Apr 18 15:37 boinc_task_state.xml
[2025-04-18 15:38:19] -rw------- 1 boincer umatlas      1050 Apr 18 15:37 memory_monitor_summary.json
[2025-04-18 15:38:19] -rw------- 1 boincer umatlas    361859 Apr 18 15:37 log.44075483._070374.job.log.tgz.1
[2025-04-18 15:38:19] -rw-r--r-- 1 boincer umatlas      8192 Apr 18 15:37 boinc_mmap_file
[2025-04-18 15:38:19] -rw-r--r-- 1 boincer umatlas        27 Apr 18 15:37 wrapper_checkpoint.txt
[2025-04-18 15:38:19] -rw------- 1 boincer umatlas      7753 Apr 18 15:37 heartbeat.json
[2025-04-18 15:38:19] -rw------- 1 boincer umatlas        95 Apr 18 15:37 pilot_heartbeat.json
[2025-04-18 15:38:19] -rw------- 1 boincer umatlas      4425 Apr 18 15:38 pilotlog.txt
[2025-04-18 15:38:19] -rw------- 1 boincer umatlas    416299 Apr 18 15:38 log.44075483._070374.job.log.1
[2025-04-18 15:38:19] -rw------- 1 boincer umatlas       357 Apr 18 15:38 output.list
[2025-04-18 15:38:19] -rw-r--r-- 1 boincer umatlas       620 Apr 18 15:38 runtime_log
[2025-04-18 15:38:19] -rw------- 1 boincer umatlas    798720 Apr 18 15:38 result.tar.gz
[2025-04-18 15:38:19] -rw-r--r-- 1 boincer umatlas     11015 Apr 18 15:38 runtime_log.err
[2025-04-18 15:38:19] -rw------- 1 boincer umatlas       658 Apr 18 15:38 iWRLDmB41P7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmxUfLDmXiCoSn.diag
[2025-04-18 15:38:19] -rw-r--r-- 1 boincer umatlas     21248 Apr 18 15:38 stderr.txt
[2025-04-18 15:38:19] HITS file was successfully produced:
[2025-04-18 15:38:19] -rw------- 1 boincer umatlas 188850894 Apr 18 15:37 shared/HITS.pool.root.1
[2025-04-18 15:38:19]  *** Contents of shared directory: ***
[2025-04-18 15:38:19] total 403040
[2025-04-18 15:38:19] -rw-r--r-- 2 boincer umatlas 222524727 Apr 18 14:25 ATLAS.root_0
[2025-04-18 15:38:19] -rw-r--r-- 2 boincer umatlas    508891 Apr 18 14:25 input.tar.gz
[2025-04-18 15:38:19] -rw-r--r-- 2 boincer umatlas     17569 Apr 18 14:25 start_atlas.sh
[2025-04-18 15:38:19] -rw------- 1 boincer umatlas 188850894 Apr 18 15:37 HITS.pool.root.1
[2025-04-18 15:38:19] -rw------- 1 boincer umatlas    798720 Apr 18 15:38 result.tar.gz
15:38:20 (24512): run_atlas exited; CPU time 39446.107943
15:38:20 (24512): called boinc_finish(0)

</stderr_txt>
]]>

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