Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:42:10 (18057): wrapper (7.7.26015): starting
13:42:10 (18057): wrapper: running run_atlas (--nthreads 12)
[2025-04-18 13:42:10] Arguments: --nthreads 12
[2025-04-18 13:42:10] Threads: 12
[2025-04-18 13:42:10] Checking for CVMFS
[2025-04-18 13:42:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-18 13:42:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-18 13:42:11] Running cvmfs_config stat atlas.cern.ch
[2025-04-18 13:42:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-18 13:42:11] 2.11.2.0 32467 376530 161668 145010 1 56 18807240 20275201 1 130560 0 22746358 99.969 7106477 47713 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-18 13:42:11] CVMFS is ok
[2025-04-18 13:42:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-18 13:42:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-18 13:42:11] Further information can be found at the LHC@home message board.
[2025-04-18 13:42:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-18 13:42:11] Checking for apptainer binary...
[2025-04-18 13:42:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-18 13:42:11] Running /usr/bin/apptainer --version
[2025-04-18 13:42:11] apptainer version 1.3.2-1.el7
[2025-04-18 13:42:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-18 13:42:12] c-205-12.aglt2.org
[2025-04-18 13:42:12] apptainer works
[2025-04-18 13:42:12] Set ATHENA_PROC_NUMBER=12
[2025-04-18 13:42:12] Set ATHENA_CORE_NUMBER=12
[2025-04-18 13:42:12] Starting ATLAS job with PandaID=6606295051
[2025-04-18 13:42:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-18 15:03:42]  *** The last 200 lines of the pilot log: ***
[2025-04-18 15:03:42]  replicas=None
[2025-04-18 15:03:42]  scope=mc23_13p6TeV
[2025-04-18 15:03:42]  status=None
[2025-04-18 15:03:42]  status_code=0
[2025-04-18 15:03:42]  storage_token=
[2025-04-18 15:03:42]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6606295051/log.44075483._067631.job.log.tgz.1
[2025-04-18 15:03:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bd/82/log.44075483._067631.job.log.tgz.1
[2025-04-18 15:03:42]  workdir=None
[2025-04-18 15:03:42] ]
[2025-04-18 15:03:42] 2025-04-18 19:03:12,294 | INFO     | transferring file log.44075483._067631.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6606295051/log.44075483._067631.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-04-18 15:03:42] 2025-04-18 19:03:12,294 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6606295051/log.44075483._067631.job.log.tgz.1 /tmp/boinchome/slots/0/log.44075483._067631.job
[2025-04-18 15:03:42] 2025-04-18 19:03:12,317 | INFO     | adding to output.list: log.44075483._067631.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bd/82/log.44075483._067631.job.log.tg
[2025-04-18 15:03:42] 2025-04-18 19:03:12,318 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-18 15:03:42] 2025-04-18 19:03:12,318 | INFO     | summary of transferred files:
[2025-04-18 15:03:42] 2025-04-18 19:03:12,318 | INFO     |  -- lfn=log.44075483._067631.job.log.tgz.1, status_code=0, status=transferred
[2025-04-18 15:03:42] 2025-04-18 19:03:12,318 | INFO     | stage-out finished correctly
[2025-04-18 15:03:42] 2025-04-18 19:03:13,658 | WARNING  | process 28012 can no longer be monitored (due to stat problems) - aborting
[2025-04-18 15:03:42] 2025-04-18 19:03:13,658 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6606295051/memory_monitor_summary.json (trf name=prmon)
[2025-04-18 15:03:42] 2025-04-18 19:03:13,755 | INFO     | number of running child processes to parent process 28012: 1
[2025-04-18 15:03:42] 2025-04-18 19:03:13,756 | INFO     | maximum number of monitored processes: 6
[2025-04-18 15:03:42] 2025-04-18 19:03:15,177 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-18 15:03:42] 2025-04-18 19:03:16,259 | INFO     | monitor loop #362: job 0:6606295051 is in state 'finished'
[2025-04-18 15:03:42] 2025-04-18 19:03:16,259 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-18 15:03:42] 2025-04-18 19:03:16,867 | INFO     | job 6606295051 has state=finished
[2025-04-18 15:03:42] 2025-04-18 19:03:16,867 | INFO     | preparing for final server update for job 6606295051 in state='finished'
[2025-04-18 15:03:42] 2025-04-18 19:03:16,868 | INFO     | this job has now completed (state=finished)
[2025-04-18 15:03:42] 2025-04-18 19:03:16,868 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-18 15:03:42] 2025-04-18 19:03:16,868 | INFO     | log transfer has been attempted: DONE
[2025-04-18 15:03:42] 2025-04-18 19:03:16,868 | INFO     | job 6606295051 has finished - writing final server update
[2025-04-18 15:03:42] 2025-04-18 19:03:16,869 | INFO     | total number of processed events: 400 (read)
[2025-04-18 15:03:42] 2025-04-18 19:03:16,870 | INFO     | executing command: lscpu
[2025-04-18 15:03:42] 2025-04-18 19:03:16,897 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-18 15:03:42] 2025-04-18 19:03:18,762 | INFO     | monitor loop #363: job 0:6606295051 is in state 'finished'
[2025-04-18 15:03:42] 2025-04-18 19:03:18,768 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-18 15:03:42] 2025-04-18 19:03:21,271 | INFO     | monitor loop #364: job 0:6606295051 is in state 'finished'
[2025-04-18 15:03:42] 2025-04-18 19:03:21,271 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-18 15:03:42] 2025-04-18 19:03:21,336 | INFO     | PID=21662 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-04-18 15:03:42] 2025-04-18 19:03:21,537 | INFO     | CPU arch script returned: x86-64-v2
[2025-04-18 15:03:42] 2025-04-18 19:03:21,538 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6606295051/memory_monitor_summary.json (trf name=prmon)
[2025-04-18 15:03:42] 2025-04-18 19:03:21,539 | INFO     | extracted standard info from prmon json
[2025-04-18 15:03:42] 2025-04-18 19:03:21,539 | INFO     | extracted standard memory fields from prmon json
[2025-04-18 15:03:42] 2025-04-18 19:03:21,539 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-18 15:03:42] 2025-04-18 19:03:21,539 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-18 15:03:42] 2025-04-18 19:03:21,540 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-18 15:03:42] 2025-04-18 19:03:21,542 | INFO     | fitting pss+swap vs Time
[2025-04-18 15:03:42] 2025-04-18 19:03:21,542 | INFO     | sum of square deviations: 115715658.0
[2025-04-18 15:03:42] 2025-04-18 19:03:21,542 | INFO     | sum of deviations: 17136046403.5
[2025-04-18 15:03:42] 2025-04-18 19:03:21,542 | INFO     | mean x: 1745000645.5
[2025-04-18 15:03:42] 2025-04-18 19:03:21,543 | INFO     | mean y: 2617367.263888889
[2025-04-18 15:03:42] 2025-04-18 19:03:21,543 | INFO     | -- intersect: -258410224526.8336
[2025-04-18 15:03:42] 2025-04-18 19:03:21,543 | INFO     | intersect: -258410224526.8336
[2025-04-18 15:03:42] 2025-04-18 19:03:21,543 | INFO     | chi2: 2.35603546278057
[2025-04-18 15:03:42] 2025-04-18 19:03:21,543 | INFO     | -- intersect: -258410224526.8336
[2025-04-18 15:03:42] 2025-04-18 19:03:21,543 | INFO     | current memory leak: 148.09 B/s (using 72 data points, chi2=2.36)
[2025-04-18 15:03:42] 2025-04-18 19:03:21,544 | INFO     | ..............................
[2025-04-18 15:03:42] 2025-04-18 19:03:21,544 | INFO     | . Timing measurements:
[2025-04-18 15:03:42] 2025-04-18 19:03:21,544 | INFO     | . get job = 0 s
[2025-04-18 15:03:42] 2025-04-18 19:03:21,544 | INFO     | . initial setup = 2 s
[2025-04-18 15:03:42] 2025-04-18 19:03:21,544 | INFO     | . payload setup = 7 s
[2025-04-18 15:03:42] 2025-04-18 19:03:21,544 | INFO     | . stage-in = 0 s
[2025-04-18 15:03:42] 2025-04-18 19:03:21,544 | INFO     | . payload execution = 4817 s
[2025-04-18 15:03:42] 2025-04-18 19:03:21,544 | INFO     | . stage-out = 0 s
[2025-04-18 15:03:42] 2025-04-18 19:03:21,544 | INFO     | . log creation = 0 s
[2025-04-18 15:03:42] 2025-04-18 19:03:21,544 | INFO     | ..............................
[2025-04-18 15:03:42] 2025-04-18 19:03:22,033 | INFO     | 
[2025-04-18 15:03:42] 2025-04-18 19:03:22,033 | INFO     | job summary report
[2025-04-18 15:03:42] 2025-04-18 19:03:22,033 | INFO     | --------------------------------------------------
[2025-04-18 15:03:42] 2025-04-18 19:03:22,034 | INFO     | PanDA job id: 6606295051
[2025-04-18 15:03:42] 2025-04-18 19:03:22,034 | INFO     | task id: 44075483
[2025-04-18 15:03:42] 2025-04-18 19:03:22,034 | INFO     | errors: (none)
[2025-04-18 15:03:42] 2025-04-18 19:03:22,034 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-18 15:03:42] 2025-04-18 19:03:22,034 | INFO     | pilot state: finished 
[2025-04-18 15:03:42] 2025-04-18 19:03:22,034 | INFO     | transexitcode: 0
[2025-04-18 15:03:42] 2025-04-18 19:03:22,035 | INFO     | exeerrorcode: 0
[2025-04-18 15:03:42] 2025-04-18 19:03:22,035 | INFO     | exeerrordiag: 
[2025-04-18 15:03:42] 2025-04-18 19:03:22,035 | INFO     | exitcode: 0
[2025-04-18 15:03:42] 2025-04-18 19:03:22,035 | INFO     | exitmsg: OK
[2025-04-18 15:03:42] 2025-04-18 19:03:22,035 | INFO     | cpuconsumptiontime: 45211 s
[2025-04-18 15:03:42] 2025-04-18 19:03:22,035 | INFO     | nevents: 400
[2025-04-18 15:03:42] 2025-04-18 19:03:22,036 | INFO     | neventsw: 0
[2025-04-18 15:03:42] 2025-04-18 19:03:22,036 | INFO     | pid: 28012
[2025-04-18 15:03:42] 2025-04-18 19:03:22,036 | INFO     | pgrp: 28012
[2025-04-18 15:03:42] 2025-04-18 19:03:22,036 | INFO     | corecount: 12
[2025-04-18 15:03:42] 2025-04-18 19:03:22,036 | INFO     | event service: False
[2025-04-18 15:03:42] 2025-04-18 19:03:22,036 | INFO     | sizes: {0: 2426653, 1: 2426852, 6: 2427058, 12: 2427086, 4828: 2453180, 4829: 2453179, 4830: 2462304, 4833: 2462360, 4840: 2462530}
[2025-04-18 15:03:42] 2025-04-18 19:03:22,037 | INFO     | --------------------------------------------------
[2025-04-18 15:03:42] 2025-04-18 19:03:22,037 | INFO     | 
[2025-04-18 15:03:42] 2025-04-18 19:03:22,037 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-04-18 15:03:42] 2025-04-18 19:03:22,060 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-18 15:03:42] 2025-04-18 19:03:22,061 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-18 15:03:42] 2025-04-18 19:03:22,061 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-18 15:03:42] 2025-04-18 19:03:22,061 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-18 15:03:42] 2025-04-18 19:03:22,061 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-18 15:03:42] 2025-04-18 19:03:22,061 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-18 15:03:42] 2025-04-18 19:03:22,061 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-18 15:03:42] 2025-04-18 19:03:22,061 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-18 15:03:42] 2025-04-18 19:03:22,061 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-18 15:03:42] 2025-04-18 19:03:22,062 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-18 15:03:42] 2025-04-18 19:03:22,062 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-18 15:03:42] 2025-04-18 19:03:22,062 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-18 15:03:42] 2025-04-18 19:03:22,062 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-18 15:03:42] 2025-04-18 19:03:22,062 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-18 15:03:42] 2025-04-18 19:03:22,062 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-18 15:03:42] 2025-04-18 19:03:22,062 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-18 15:03:42] 2025-04-18 19:03:22,062 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-18 15:03:42] 2025-04-18 19:03:22,062 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-18 15:03:42] 2025-04-18 19:03:22,063 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-18 15:03:42] 2025-04-18 19:03:22,063 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-18 15:03:42] 2025-04-18 19:03:22,063 | INFO     | job 6606295051 has completed (purged errors)
[2025-04-18 15:03:42] 2025-04-18 19:03:22,063 | INFO     | overall cleanup function is called
[2025-04-18 15:03:42] 2025-04-18 19:03:23,070 | INFO     | --- collectZombieJob: --- 10, [28012]
[2025-04-18 15:03:42] 2025-04-18 19:03:23,071 | INFO     | zombie collector waiting for pid 28012
[2025-04-18 15:03:42] 2025-04-18 19:03:23,071 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-18 15:03:42] 2025-04-18 19:03:23,071 | INFO     | collected zombie processes
[2025-04-18 15:03:42] 2025-04-18 19:03:23,071 | INFO     | will attempt to kill all subprocesses of pid=28012
[2025-04-18 15:03:42] 2025-04-18 19:03:23,167 | INFO     | process IDs to be killed: [28012] (in reverse order)
[2025-04-18 15:03:42] 2025-04-18 19:03:23,218 | WARNING  | found no corresponding commands to process id(s)
[2025-04-18 15:03:42] 2025-04-18 19:03:23,219 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-18 15:03:42] 2025-04-18 19:03:23,222 | INFO     | did not find any defunct processes belonging to 28012
[2025-04-18 15:03:42] 2025-04-18 19:03:23,224 | INFO     | did not find any defunct processes belonging to 28012
[2025-04-18 15:03:42] 2025-04-18 19:03:23,224 | INFO     | ready for new job
[2025-04-18 15:03:42] 2025-04-18 19:03:23,224 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-18 15:03:42] 2025-04-18 19:03:23,225 | INFO     | **************************************
[2025-04-18 15:03:42] 2025-04-18 19:03:23,226 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-18 15:03:42] 2025-04-18 19:03:23,226 | INFO     | **************************************
[2025-04-18 15:03:42] 2025-04-18 19:03:23,226 | INFO     | 
[2025-04-18 15:03:42] 2025-04-18 19:03:23,226 | INFO     | architecture information:
[2025-04-18 15:03:42] 2025-04-18 19:03:23,227 | INFO     | executing command: cat /etc/os-release
[2025-04-18 15:03:42] 2025-04-18 19:03:23,240 | INFO     | cat /etc/os-release:
[2025-04-18 15:03:42] NAME="CentOS Linux"
[2025-04-18 15:03:42] VERSION="7 (Core)"
[2025-04-18 15:03:42] ID="centos"
[2025-04-18 15:03:42] ID_LIKE="rhel fedora"
[2025-04-18 15:03:42] VERSION_ID="7"
[2025-04-18 15:03:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-18 15:03:42] ANSI_COLOR="0;31"
[2025-04-18 15:03:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-18 15:03:42] HOME_URL="https://www.centos.org/"
[2025-04-18 15:03:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-18 15:03:42] 
[2025-04-18 15:03:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-18 15:03:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-18 15:03:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-18 15:03:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-18 15:03:42] 
[2025-04-18 15:03:42] 2025-04-18 19:03:23,241 | INFO     | **************************************
[2025-04-18 15:03:42] 2025-04-18 19:03:23,744 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-04-18 15:03:42] 2025-04-18 19:03:23,760 | INFO     | sufficient remaining disk space (29397876736 B)
[2025-04-18 15:03:42] 2025-04-18 19:03:23,760 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-18 15:03:42] 2025-04-18 19:03:23,761 | INFO     | current server update state: UPDATING_FINAL
[2025-04-18 15:03:42] 2025-04-18 19:03:23,761 | INFO     | update_server=False
[2025-04-18 15:03:42] 2025-04-18 19:03:23,761 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-18 15:03:42] 2025-04-18 19:03:23,761 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-18 15:03:42] 2025-04-18 19:03:23,762 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-18 15:03:42] 2025-04-18 19:03:23,762 | INFO     | found 0 job(s) in 20 queues
[2025-04-18 15:03:42] 2025-04-18 19:03:23,762 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-18 15:03:42] 2025-04-18 19:03:23,768 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-18 15:03:42] 2025-04-18 19:03:23,774 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-04-18 15:03:42] 2025-04-18 19:03:23,775 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-04-18 15:03:42] 2025-04-18 19:03:23,775 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-18 15:03:42] 2025-04-18 19:03:23,775 | INFO     | will abort loop
[2025-04-18 15:03:42] 2025-04-18 19:03:23,905 | INFO     | all job control threads have been joined
[2025-04-18 15:03:42] 2025-04-18 19:03:24,456 | INFO     | all data control threads have been joined
[2025-04-18 15:03:42] 2025-04-18 19:03:24,616 | INFO     | all payload control threads have been joined
[2025-04-18 15:03:42] 2025-04-18 19:03:24,766 | INFO     | [job] retrieve thread has finished
[2025-04-18 15:03:42] 2025-04-18 19:03:24,779 | INFO     | [job] job monitor thread has finished
[2025-04-18 15:03:42] 2025-04-18 19:03:24,850 | INFO     | [payload] validate_pre thread has finished
[2025-04-18 15:03:42] 2025-04-18 19:03:24,883 | INFO     | [job] create_data_payload thread has finished
[2025-04-18 15:03:42] 2025-04-18 19:03:24,910 | INFO     | [job] control thread has finished
[2025-04-18 15:03:42] 2025-04-18 19:03:25,438 | INFO     | [payload] failed_post thread has finished
[2025-04-18 15:03:42] 2025-04-18 19:03:25,461 | INFO     | [data] control thread has finished
[2025-04-18 15:03:42] 2025-04-18 19:03:25,540 | INFO     | [data] copytool_in thread has finished
[2025-04-18 15:03:42] 2025-04-18 19:03:25,621 | INFO     | [payload] control thread has finished
[2025-04-18 15:03:42] 2025-04-18 19:03:25,767 | INFO     | [data] copytool_out thread has finished
[2025-04-18 15:03:42] 2025-04-18 19:03:25,769 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-18 15:03:42] 2025-04-18 19:03:26,016 | INFO     | [payload] validate_post thread has finished
[2025-04-18 15:03:42] 2025-04-18 19:03:26,106 | INFO     | [job] validate thread has finished
[2025-04-18 15:03:42] 2025-04-18 19:03:26,167 | INFO     | [payload] execute_payloads thread has finished
[2025-04-18 15:03:42] 2025-04-18 19:03:26,639 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-18 15:03:42] 2025-04-18 19:03:27,645 | INFO     | [job] queue monitor thread has finished
[2025-04-18 15:03:42] 2025-04-18 19:03:29,775 | INFO     | [data] queue_monitor thread has finished
[2025-04-18 15:03:42] 2025-04-18 19:03:34,667 | INFO     | job.realtimelogging is not enabled
[2025-04-18 15:03:42] 2025-04-18 19:03:35,673 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-18 15:03:42] 2025-04-18 19:03:37,276 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140381552432960)>', '<ExcThread(monitor, started 140380955711232)>']
[2025-04-18 15:03:42] 2025-04-18 19:03:37,840 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-18 15:03:42] 2025-04-18 19:03:37,840 | INFO     | [monitor] control thread has ended
[2025-04-18 15:03:42] 2025-04-18 19:03:42,302 | INFO     | all workflow threads have been joined
[2025-04-18 15:03:42] 2025-04-18 19:03:42,302 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-18 15:03:42] 2025-04-18 19:03:42,302 | INFO     | traces error code: 0
[2025-04-18 15:03:42] 2025-04-18 19:03:42,302 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-18 15:03:42] 2025-04-18 19:03:42,396 [wrapper] ==== pilot stdout END ====
[2025-04-18 15:03:42] 2025-04-18 19:03:42,399 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-18 15:03:42] 2025-04-18 19:03:42,403 [wrapper] pilotpid: 21662
[2025-04-18 15:03:42] 2025-04-18 19:03:42,406 [wrapper] Pilot exit status: 0
[2025-04-18 15:03:42] 2025-04-18 19:03:42,422 [wrapper] pandaids: 6606295051
[2025-04-18 15:03:42] 2025-04-18 19:03:42,464 [wrapper] cleanup supervisor_pilot 24862 21663
[2025-04-18 15:03:42] 2025-04-18 19:03:42,468 [wrapper] Test setup, not cleaning
[2025-04-18 15:03:42] 2025-04-18 19:03:42,471 [wrapper] apfmon messages muted
[2025-04-18 15:03:42] 2025-04-18 19:03:42,475 [wrapper] ==== wrapper stdout END ====
[2025-04-18 15:03:42] 2025-04-18 19:03:42,479 [wrapper] ==== wrapper stderr END ====
[2025-04-18 15:03:42]  *** Error codes and diagnostics ***
[2025-04-18 15:03:42]     "exeErrorCode": 0,
[2025-04-18 15:03:42]     "exeErrorDiag": "",
[2025-04-18 15:03:42]     "pilotErrorCode": 0,
[2025-04-18 15:03:42]     "pilotErrorDiag": "",
[2025-04-18 15:03:42]  *** Listing of results directory ***
[2025-04-18 15:03:42] total 409268
[2025-04-18 15:03:42] -rw-r--r-- 1 boincer umatlas    495897 Apr 18 05:38 pilot3.tar.gz
[2025-04-18 15:03:42] -rw-r--r-- 1 boincer umatlas      5111 Apr 18 05:45 queuedata.json
[2025-04-18 15:03:42] -rwx------ 1 boincer umatlas     37140 Apr 18 05:46 runpilot2-wrapper.sh
[2025-04-18 15:03:42] -rw-r--r-- 1 boincer umatlas       100 Apr 18 13:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-18 15:03:42] -rwxr-xr-x 1 boincer umatlas      7986 Apr 18 13:42 run_atlas
[2025-04-18 15:03:42] -rw-r--r-- 1 boincer umatlas       105 Apr 18 13:42 job.xml
[2025-04-18 15:03:42] -rw-r--r-- 2 boincer umatlas 225696979 Apr 18 13:42 EVNT.44075481._002629.pool.root.1
[2025-04-18 15:03:42] -rw-r--r-- 2 boincer umatlas     17569 Apr 18 13:42 start_atlas.sh
[2025-04-18 15:03:42] drwxrwx--x 2 boincer umatlas      4096 Apr 18 13:42 shared
[2025-04-18 15:03:42] -rw-r--r-- 2 boincer umatlas    508894 Apr 18 13:42 input.tar.gz
[2025-04-18 15:03:42] -rw-r--r-- 1 boincer umatlas         0 Apr 18 13:42 boinc_lockfile
[2025-04-18 15:03:42] -rw-r--r-- 1 boincer umatlas      2579 Apr 18 13:42 pandaJob.out
[2025-04-18 15:03:42] -rw------- 1 boincer umatlas       424 Apr 18 13:42 setup.sh.local
[2025-04-18 15:03:42] -rw------- 1 boincer umatlas    991292 Apr 18 13:42 agis_schedconf.cvmfs.json
[2025-04-18 15:03:42] -rw------- 1 boincer umatlas   1618536 Apr 18 13:42 agis_ddmendpoints.agis.ALL.json
[2025-04-18 15:03:42] drwx------ 4 boincer umatlas      4096 Apr 18 13:42 pilot3
[2025-04-18 15:03:42] -rw-r--r-- 1 boincer umatlas      5867 Apr 18 15:00 init_data.xml
[2025-04-18 15:03:42] -rw------- 1 boincer umatlas        95 Apr 18 15:02 pilot_heartbeat.json
[2025-04-18 15:03:42] -rw------- 1 boincer umatlas 187891314 Apr 18 15:02 HITS.44075483._067631.pool.root.1
[2025-04-18 15:03:42] -rw-r--r-- 1 boincer umatlas       529 Apr 18 15:02 boinc_task_state.xml
[2025-04-18 15:03:42] -rw------- 1 boincer umatlas      1047 Apr 18 15:03 memory_monitor_summary.json
[2025-04-18 15:03:42] -rw------- 1 boincer umatlas    354649 Apr 18 15:03 log.44075483._067631.job.log.tgz.1
[2025-04-18 15:03:42] -rw------- 1 boincer umatlas      7765 Apr 18 15:03 heartbeat.json
[2025-04-18 15:03:42] -rw-r--r-- 1 boincer umatlas      8192 Apr 18 15:03 boinc_mmap_file
[2025-04-18 15:03:42] -rw-r--r-- 1 boincer umatlas        27 Apr 18 15:03 wrapper_checkpoint.txt
[2025-04-18 15:03:42] -rw------- 1 boincer umatlas      4734 Apr 18 15:03 pilotlog.txt
[2025-04-18 15:03:42] -rw------- 1 boincer umatlas    463104 Apr 18 15:03 log.44075483._067631.job.log.1
[2025-04-18 15:03:42] -rw------- 1 boincer umatlas       357 Apr 18 15:03 output.list
[2025-04-18 15:03:42] -rw-r--r-- 1 boincer umatlas       620 Apr 18 15:03 runtime_log
[2025-04-18 15:03:42] -rw------- 1 boincer umatlas    839680 Apr 18 15:03 result.tar.gz
[2025-04-18 15:03:42] -rw-r--r-- 1 boincer umatlas     11015 Apr 18 15:03 runtime_log.err
[2025-04-18 15:03:42] -rw------- 1 boincer umatlas       658 Apr 18 15:03 F09LDm8TxP7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDm41eLDmqMxtfm.diag
[2025-04-18 15:03:42] -rw-r--r-- 1 boincer umatlas     21890 Apr 18 15:03 stderr.txt
[2025-04-18 15:03:42] HITS file was successfully produced:
[2025-04-18 15:03:42] -rw------- 1 boincer umatlas 187891314 Apr 18 15:02 shared/HITS.pool.root.1
[2025-04-18 15:03:42]  *** Contents of shared directory: ***
[2025-04-18 15:03:42] total 405240
[2025-04-18 15:03:42] -rw-r--r-- 2 boincer umatlas 225696979 Apr 18 13:42 ATLAS.root_0
[2025-04-18 15:03:42] -rw-r--r-- 2 boincer umatlas     17569 Apr 18 13:42 start_atlas.sh
[2025-04-18 15:03:42] -rw-r--r-- 2 boincer umatlas    508894 Apr 18 13:42 input.tar.gz
[2025-04-18 15:03:42] -rw------- 1 boincer umatlas 187891314 Apr 18 15:02 HITS.pool.root.1
[2025-04-18 15:03:42] -rw------- 1 boincer umatlas    839680 Apr 18 15:03 result.tar.gz
15:03:44 (18057): run_atlas exited; CPU time 45199.806611
15:03:44 (18057): called boinc_finish(0)

</stderr_txt>
]]>

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