Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-19 14:13:40 (5080): Detected: vboxwrapper 26206
2025-04-19 14:13:40 (5080): Detected: BOINC client v8.0.2
2025-04-19 14:13:40 (5080): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-04-19 14:13:41 (5080): Successfully copied 'init_data.xml' to the shared directory.
2025-04-19 14:13:41 (5080): Create VM. (boinc_ac79820eceaff855, slot#0)
2025-04-19 14:13:42 (5080): Setting Memory Size for VM. (4800MB)
2025-04-19 14:13:42 (5080): Setting CPU Count for VM. (8)
2025-04-19 14:13:42 (5080): Setting Chipset Options for VM.
2025-04-19 14:13:43 (5080): Setting Graphics Controller Options for VM.
2025-04-19 14:13:43 (5080): Setting Boot Options for VM.
2025-04-19 14:13:43 (5080): Setting Network Configuration for NAT.
2025-04-19 14:13:44 (5080): Enabling VM Network Access.
2025-04-19 14:13:44 (5080): Disabling USB Support for VM.
2025-04-19 14:13:44 (5080): Disabling COM Port Support for VM.
2025-04-19 14:13:44 (5080): Disabling LPT Port Support for VM.
2025-04-19 14:13:45 (5080): Disabling Audio Support for VM.
2025-04-19 14:13:45 (5080): Disabling Clipboard Support for VM.
2025-04-19 14:13:45 (5080): Disabling Drag and Drop Support for VM.
2025-04-19 14:13:45 (5080): Adding storage controller(s) to VM.
2025-04-19 14:13:46 (5080): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-19 14:13:49 (5080): Adding VirtualBox Guest Additions to VM.
2025-04-19 14:13:49 (5080): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-19 14:13:49 (5080): forwarding host port 55045 to guest port 80
2025-04-19 14:13:49 (5080): Enabling remote desktop for VM.
2025-04-19 14:13:50 (5080): Required extension pack not installed, remote desktop not enabled.
2025-04-19 14:13:50 (5080): Enabling shared directory for VM.
2025-04-19 14:13:50 (5080): Starting VM using VBoxManage interface. (boinc_ac79820eceaff855, slot#0)
2025-04-19 14:13:56 (5080): Successfully started VM. (PID = '14340')
2025-04-19 14:13:56 (5080): Reporting VM Process ID to BOINC.
2025-04-19 14:13:56 (5080): Guest Log: BIOS: VirtualBox 7.1.4
2025-04-19 14:13:56 (5080): Guest Log: CPUID EDX: 0x178bfbff
2025-04-19 14:13:56 (5080): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-19 14:13:56 (5080): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-19 14:13:56 (5080): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-19 14:13:56 (5080): Detected: Web Application Enabled (http://localhost:55045)
2025-04-19 14:13:56 (5080): Preference change detected
2025-04-19 14:13:56 (5080): Setting CPU throttle for VM. (100%)
2025-04-19 14:13:56 (5080): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-19 14:13:58 (5080): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-19 14:13:58 (5080): Guest Log: BIOS: Booting from Hard Disk...
2025-04-19 14:14:01 (5080): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-19 14:14:01 (5080): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-19 14:14:01 (5080): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-19 14:14:01 (5080): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-19 14:14:01 (5080): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-19 14:14:01 (5080): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-19 14:14:01 (5080): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-19 14:14:01 (5080): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-19 14:14:01 (5080): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-19 14:14:01 (5080): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-19 14:14:01 (5080): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-19 14:14:01 (5080): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-19 14:14:01 (5080): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-19 14:14:01 (5080): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-19 14:14:01 (5080): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-19 14:14:01 (5080): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-19 14:14:01 (5080): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-19 14:14:01 (5080): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-19 14:14:01 (5080): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-19 14:14:01 (5080): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-19 14:14:01 (5080): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-19 14:14:01 (5080): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-19 14:14:01 (5080): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-19 14:14:01 (5080): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-19 14:14:01 (5080): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-19 14:14:01 (5080): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-19 14:14:01 (5080): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-19 14:14:01 (5080): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-19 14:14:01 (5080): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-19 14:14:01 (5080): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-19 14:14:01 (5080): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-19 14:14:01 (5080): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-19 14:14:12 (5080): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-19 14:14:12 (5080): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-19 14:14:29 (5080): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-19 14:14:29 (5080): Guest Log: 00:00:00.000167 main     Log opened 2025-04-19T14:14:27.819458000Z
2025-04-19 14:14:29 (5080): Guest Log: 00:00:00.000293 main     OS Product: Linux
2025-04-19 14:14:29 (5080): Guest Log: 00:00:00.000310 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-19 14:14:29 (5080): Guest Log: 00:00:00.000322 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-19 14:14:29 (5080): Guest Log: 00:00:00.000335 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-19 14:14:29 (5080): Guest Log: 00:00:00.000336 main     Process ID: 1377
2025-04-19 14:14:29 (5080): Guest Log: 00:00:00.000336 main     Package type: LINUX_64BITS_GENERIC
2025-04-19 14:14:29 (5080): Guest Log: 00:00:00.001701 main     5.2.32 r132073 started. Verbose level = 0
2025-04-19 14:14:30 (5080): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-19 14:14:30 (5080): Guest Log: [INFO] Mounting shared directory
2025-04-19 14:14:30 (5080): Guest Log: [INFO] Checking for init_data.xml
2025-04-19 14:14:39 (5080): Guest Log: 00:00:10.021732 timesync vgsvcTimeSyncWorker: Radical guest time change: -28 789 120 139 000ns (GuestNow=1 745 043 278 703 387 000 ns GuestLast=1 745 072 067 823 526 000 ns fSetTimeLastLoop=true )
2025-04-19 14:14:42 (5080): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-19 14:14:42 (5080): Guest Log: [INFO] Detected branch: prod
2025-04-19 14:14:43 (5080): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-19 14:14:43 (5080): Guest Log: Copying input files
2025-04-19 14:14:44 (5080): Guest Log: Copied input files into RunAtlas.
2025-04-19 14:14:44 (5080): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-19 14:14:44 (5080): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-19 14:14:44 (5080): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-19 14:14:44 (5080): Guest Log: Further information can be found at the LHC@home message board.
2025-04-19 14:14:55 (5080): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-19 14:14:56 (5080): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-19 14:14:56 (5080): Guest Log: 2.6.3.0 1656 0 34368 145029 4 1 3119946 4096000 0 65024 0 0 n/a 1171 386 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-04-19 14:14:59 (5080): Guest Log: copied the webapp to /var/www
2025-04-19 14:14:59 (5080): Guest Log: ATHENA_PROC_NUMBER=8
2025-04-19 14:14:59 (5080): Guest Log: ATHENA_CORE_NUMBER=8
2025-04-19 14:15:00 (5080): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-19 14:15:00 (5080): Guest Log:  *** Starting ATLAS job. (PandaID=6606553579 taskID=44075483) ***
2025-04-19 14:33:09 (5080): VM state change detected. (old = 'running', new = 'paused')
2025-04-19 16:20:28 (5080): VM state change detected. (old = 'paused', new = 'running')
2025-04-19 16:20:29 (5080): Guest Log: 00:18:41.044621 timesync vgsvcTimeSyncWorker: Radical host time change: 6 448 982 000 000ns (HostNow=1 745 050 828 688 000 000 ns HostLast=1 745 044 379 706 000 000 ns)
2025-04-19 16:20:39 (5080): Guest Log: 00:18:51.059391 timesync vgsvcTimeSyncWorker: Radical guest time change: 6 448 977 682 000ns (GuestNow=1 745 050 838 703 259 000 ns GuestLast=1 745 044 389 725 577 000 ns fSetTimeLastLoop=true )
2025-04-19 17:41:22 (5080): Status Report: Elapsed Time: '6000.000000'
2025-04-19 17:41:22 (5080): Status Report: CPU Time: '10920.312500'
2025-04-19 19:26:43 (5080): Guest Log: 02:05:14.201272 timesync vgsvcTimeSyncWorker: Radical host time change: 4 788 873 000 000ns (HostNow=1 745 062 000 728 000 000 ns HostLast=1 745 057 211 855 000 000 ns)
2025-04-19 19:26:43 (5080): VM state change detected. (old = 'running', new = 'paused')
2025-04-19 19:26:44 (5080): VM state change detected. (old = 'paused', new = 'running')
2025-04-19 19:26:52 (5080): Guest Log: 02:05:24.214707 timesync vgsvcTimeSyncWorker: Radical guest time change: 4 788 894 139 000ns (GuestNow=1 745 062 010 738 978 000 ns GuestLast=1 745 057 221 844 839 000 ns fSetTimeLastLoop=true )
2025-04-19 19:48:26 (5080): Guest Log:  *** Job finished ***
2025-04-19 19:48:26 (5080): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-19 19:48:26 (5080): Guest Log: 2025-04-19 11:48:12,152 | INFO     | [payload] control thread has finished
2025-04-19 19:48:26 (5080): Guest Log: 2025-04-19 11:48:12,750 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-04-19 19:48:26 (5080): Guest Log: 2025-04-19 11:48:16,766 | INFO     | [data] queue_monitor thread has finished
2025-04-19 19:48:26 (5080): Guest Log: 2025-04-19 11:48:17,107 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140278671787840)>', '<ExcThread(monitor, started 140277851350784)>']
2025-04-19 19:48:26 (5080): Guest Log: 2025-04-19 11:48:17,781 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-19 19:48:26 (5080): Guest Log: 2025-04-19 11:48:17,781 | INFO     | [monitor] control thread has ended
2025-04-19 19:48:26 (5080): Guest Log: 2025-04-19 11:48:22,122 | INFO     | all workflow threads have been joined
2025-04-19 19:48:26 (5080): Guest Log: 2025-04-19 11:48:22,122 | INFO     | end of generic workflow (traces error code: 0)
2025-04-19 19:48:26 (5080): Guest Log: 2025-04-19 11:48:22,122 | INFO     | traces error code: 0
2025-04-19 19:48:26 (5080): Guest Log: 2025-04-19 11:48:22,122 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-19 19:48:26 (5080): Guest Log: 2025-04-19 11:48:22,379 [wrapper] ==== pilot stdout END ====
2025-04-19 19:48:26 (5080): Guest Log: 2025-04-19 11:48:22,385 [wrapper] ==== wrapper stdout RESUME ====
2025-04-19 19:48:26 (5080): Guest Log: 2025-04-19 11:48:22,388 [wrapper] pilotpid: 6031
2025-04-19 19:48:26 (5080): Guest Log: 2025-04-19 11:48:22,393 [wrapper] Pilot exit status: 0
2025-04-19 19:48:26 (5080): Guest Log: 2025-04-19 11:48:22,719 [wrapper] pandaids: 6606553579
2025-04-19 19:48:26 (5080): Guest Log: 2025-04-19 11:48:22,745 [wrapper] cleanup supervisor_pilot  8091 6032
2025-04-19 19:48:26 (5080): Guest Log: 2025-04-19 11:48:22,748 [wrapper] Test setup, not cleaning
2025-04-19 19:48:26 (5080): Guest Log: 2025-04-19 11:48:22,754 [wrapper] apfmon messages muted
2025-04-19 19:48:26 (5080): Guest Log: 2025-04-19 11:48:22,757 [wrapper] ==== wrapper stdout END ====
2025-04-19 19:48:26 (5080): Guest Log: 2025-04-19 11:48:22,762 [wrapper] ==== wrapper stderr END ====
2025-04-19 19:48:26 (5080): Guest Log:  *** Error codes and diagnostics ***
2025-04-19 19:48:27 (5080): Guest Log:     "exeErrorCode": 0,
2025-04-19 19:48:27 (5080): Guest Log:     "exeErrorDiag": "",
2025-04-19 19:48:27 (5080): Guest Log:     "pilotErrorCode": 0,
2025-04-19 19:48:27 (5080): Guest Log:     "pilotErrorDiag": "",
2025-04-19 19:48:27 (5080): Guest Log:  *** Listing of results directory ***
2025-04-19 19:48:27 (5080): Guest Log: total 200552
2025-04-19 19:48:27 (5080): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 18 13:35 pilot3.tar.gz
2025-04-19 19:48:27 (5080): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 18 13:42 queuedata.json
2025-04-19 19:48:27 (5080): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 18 13:42 runpilot2-wrapper.sh
2025-04-19 19:48:27 (5080): Guest Log: -rwxr-xr-x. 1 atlas atlas     12293 Apr 19 06:14 init_data.xml
2025-04-19 19:48:27 (5080): Guest Log: -rwxr-xr-x. 1 atlas atlas    508889 Apr 19 06:14 input.tar.gz
2025-04-19 19:48:27 (5080): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 19 06:14 start_atlas.sh
2025-04-19 19:48:27 (5080): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 19 06:14 EVNT.44075481._002713.pool.root.1 -> /data/./ATLAS.root_0
2025-04-19 19:48:27 (5080): Guest Log: -rw-r--r--. 1 atlas atlas      2578 Apr 19 06:14 pandaJob.out
2025-04-19 19:48:27 (5080): Guest Log: -rw-------. 1 atlas atlas       424 Apr 19 06:15 setup.sh.local
2025-04-19 19:48:27 (5080): Guest Log: -rw-------. 1 atlas atlas    991292 Apr 19 06:16 agis_schedconf.cvmfs.json
2025-04-19 19:48:27 (5080): Guest Log: drwx------. 4 atlas atlas      4096 Apr 19 06:17 pilot3
2025-04-19 19:48:27 (5080): Guest Log: -rw-------. 1 atlas atlas 199389120 Apr 19 11:47 HITS.44075483._069860.pool.root.1
2025-04-19 19:48:27 (5080): Guest Log: -rw-------. 1 atlas atlas        97 Apr 19 11:47 pilot_heartbeat.json
2025-04-19 19:48:27 (5080): Guest Log: -rw-------. 1 atlas atlas      1038 Apr 19 11:47 memory_monitor_summary.json
2025-04-19 19:48:27 (5080): Guest Log: -rw-------. 1 atlas atlas   1618536 Apr 19 11:48 agis_ddmendpoints.agis.ALL.json
2025-04-19 19:48:27 (5080): Guest Log: -rw-------. 1 atlas atlas    345378 Apr 19 11:48 log.44075483._069860.job.log.tgz.1
2025-04-19 19:48:27 (5080): Guest Log: -rw-------. 1 atlas atlas      7726 Apr 19 11:48 heartbeat.json
2025-04-19 19:48:27 (5080): Guest Log: -rw-------. 1 atlas atlas      4413 Apr 19 11:48 pilotlog.txt
2025-04-19 19:48:27 (5080): Guest Log: -rw-------. 1 atlas atlas    742523 Apr 19 11:48 log.44075483._069860.job.log.1
2025-04-19 19:48:27 (5080): Guest Log: -rw-------. 1 atlas atlas       357 Apr 19 11:48 output.list
2025-04-19 19:48:27 (5080): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 19 11:48 runtime_log
2025-04-19 19:48:27 (5080): Guest Log: -rw-------. 1 atlas atlas   1105920 Apr 19 11:48 result.tar.gz
2025-04-19 19:48:27 (5080): Guest Log: -rw-------. 1 atlas atlas       659 Apr 19 11:48 xBMLDm590P7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmZPfLDmWSyKmn.diag
2025-04-19 19:48:27 (5080): Guest Log: -rw-r--r--. 1 atlas atlas     10938 Apr 19 11:48 runtime_log.err
2025-04-19 19:48:27 (5080): Guest Log: Looking for outputfile HITS.44075483._069860.pool.root.1
2025-04-19 19:48:27 (5080): Guest Log: HITS file was successfully produced
2025-04-19 19:48:27 (5080): Guest Log: -rw-------. 1 atlas atlas 199389120 Apr 19 11:47 /home/atlas/RunAtlas/HITS.44075483._069860.pool.root.1
2025-04-19 19:48:27 (5080): Guest Log: Successfully finished the ATLAS job!
2025-04-19 19:48:27 (5080): Guest Log: Copying the results back to the shared directory!
2025-04-19 19:48:27 (5080): Guest Log:  *** Contents of shared directory: ***
2025-04-19 19:48:27 (5080): Guest Log: total 413564
2025-04-19 19:48:27 (5080): Guest Log: -rwxrwxrwx. 1 root root 222443739 Apr 19 06:13 ATLAS.root_0
2025-04-19 19:48:27 (5080): Guest Log: -rwxrwxrwx. 1 root root 199389120 Apr 19  2025 HITS.pool.root.1
2025-04-19 19:48:27 (5080): Guest Log: -rwxrwxrwx. 1 root root     12293 Apr 19 06:13 init_data.xml
2025-04-19 19:48:27 (5080): Guest Log: -rwxrwxrwx. 1 root root    508889 Apr 18 16:45 input.tar.gz
2025-04-19 19:48:27 (5080): Guest Log: -rwxrwxrwx. 1 root root   1105920 Apr 19  2025 result.tar.gz
2025-04-19 19:48:27 (5080): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 18 16:45 start_atlas.sh
2025-04-19 19:48:27 (5080): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-19 19:48:27 (5080): VM Completion File Detected.
2025-04-19 19:48:27 (5080): Powering off VM.
2025-04-19 19:48:28 (5080): Successfully stopped VM.
2025-04-19 19:48:28 (5080): Deregistering VM. (boinc_ac79820eceaff855, slot#0)
2025-04-19 19:48:28 (5080): Removing network bandwidth throttle group from VM.
2025-04-19 19:48:28 (5080): Removing VM from VirtualBox.
19:48:33 (5080): called boinc_finish(0)

</stderr_txt>
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