Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
04:52:35 (2042440): wrapper (7.7.26015): starting
04:52:35 (2042440): wrapper: running run_atlas (--nthreads 4)
[2025-04-19 04:52:35] Arguments: --nthreads 4
[2025-04-19 04:52:35] Threads: 4
[2025-04-19 04:52:35] Checking for CVMFS
[2025-04-19 04:52:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-19 04:52:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-19 04:52:35] Running cvmfs_config stat atlas.cern.ch
[2025-04-19 04:52:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-19 04:52:35] 2.9.2.0 3134956 10136 100984 145023 0 56 25169257 36864000 0 130560 0 7754157 99.992 2296868 7729 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-04-19 04:52:35] CVMFS is ok
[2025-04-19 04:52:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-19 04:52:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-19 04:52:35] Further information can be found at the LHC@home message board.
[2025-04-19 04:52:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-19 04:52:35] Checking for apptainer binary...
[2025-04-19 04:52:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-19 04:52:35] Running /usr/bin/apptainer --version
[2025-04-19 04:52:35] apptainer version 1.3.6-6.1
[2025-04-19 04:52:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-19 04:52:36] cosA131
[2025-04-19 04:52:36] apptainer works
[2025-04-19 04:52:36] Set ATHENA_PROC_NUMBER=4
[2025-04-19 04:52:36] Set ATHENA_CORE_NUMBER=4
[2025-04-19 04:52:36] Starting ATLAS job with PandaID=6606130352
[2025-04-19 04:52:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-19 06:13:09]  *** The last 200 lines of the pilot log: ***
[2025-04-19 06:13:09]  protocol_id=None
[2025-04-19 06:13:09]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-19 06:13:09]  replicas=None
[2025-04-19 06:13:09]  scope=mc23_13p6TeV
[2025-04-19 06:13:09]  status=None
[2025-04-19 06:13:09]  status_code=0
[2025-04-19 06:13:09]  storage_token=
[2025-04-19 06:13:09]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6606130352/log.44075483._064074.job.log.tgz.1
[2025-04-19 06:13:09]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e0/e5/log.44075483._064074.job.log.tgz.1
[2025-04-19 06:13:09]  workdir=None
[2025-04-19 06:13:09] ]
[2025-04-19 06:13:09] 2025-04-19 04:12:40,414 | INFO     | transferring file log.44075483._064074.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6606130352/log.44075483._064074.job.log.tgz.1 to /local/data/boinc/
[2025-04-19 06:13:09] 2025-04-19 04:12:40,414 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6606130352/log.44075483._064074.job.log.tgz.1 /local/data/boinc/slots/0/log.44075483._0640
[2025-04-19 06:13:09] 2025-04-19 04:12:40,434 | INFO     | adding to output.list: log.44075483._064074.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e0/e5/log.44075483._064074.job.log.tg
[2025-04-19 06:13:09] 2025-04-19 04:12:40,435 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-19 06:13:09] 2025-04-19 04:12:40,435 | INFO     | summary of transferred files:
[2025-04-19 06:13:09] 2025-04-19 04:12:40,435 | INFO     |  -- lfn=log.44075483._064074.job.log.tgz.1, status_code=0, status=transferred
[2025-04-19 06:13:09] 2025-04-19 04:12:40,435 | INFO     | stage-out finished correctly
[2025-04-19 06:13:09] 2025-04-19 04:12:41,436 | INFO     | monitor loop #369: job 0:6606130352 is in state 'finished'
[2025-04-19 06:13:09] 2025-04-19 04:12:41,436 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 06:13:09] 2025-04-19 04:12:41,516 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-19 06:13:09] 2025-04-19 04:12:43,939 | INFO     | monitor loop #370: job 0:6606130352 is in state 'finished'
[2025-04-19 06:13:09] 2025-04-19 04:12:43,939 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 06:13:09] 2025-04-19 04:12:44,029 | INFO     | job 6606130352 has state=finished
[2025-04-19 06:13:09] 2025-04-19 04:12:44,029 | INFO     | preparing for final server update for job 6606130352 in state='finished'
[2025-04-19 06:13:09] 2025-04-19 04:12:44,030 | INFO     | this job has now completed (state=finished)
[2025-04-19 06:13:09] 2025-04-19 04:12:44,030 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-19 06:13:09] 2025-04-19 04:12:44,030 | INFO     | log transfer has been attempted: DONE
[2025-04-19 06:13:09] 2025-04-19 04:12:44,030 | INFO     | job 6606130352 has finished - writing final server update
[2025-04-19 06:13:09] 2025-04-19 04:12:44,030 | INFO     | total number of processed events: 400 (read)
[2025-04-19 06:13:09] 2025-04-19 04:12:44,032 | INFO     | executing command: lscpu
[2025-04-19 06:13:09] 2025-04-19 04:12:44,054 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-19 06:13:09] 2025-04-19 04:12:46,058 | INFO     | PID=2046150 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-04-19 06:13:09] 2025-04-19 04:12:46,443 | INFO     | monitor loop #371: job 0:6606130352 is in state 'finished'
[2025-04-19 06:13:09] 2025-04-19 04:12:46,443 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 06:13:09] 2025-04-19 04:12:48,946 | INFO     | monitor loop #372: job 0:6606130352 is in state 'finished'
[2025-04-19 06:13:09] 2025-04-19 04:12:48,946 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 06:13:09] 2025-04-19 04:12:49,011 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-19 06:13:09] 2025-04-19 04:12:49,012 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6606130352/memory_monitor_summary.json (trf name=prmon)
[2025-04-19 06:13:09] 2025-04-19 04:12:49,012 | INFO     | extracted standard info from prmon json
[2025-04-19 06:13:09] 2025-04-19 04:12:49,012 | INFO     | extracted standard memory fields from prmon json
[2025-04-19 06:13:09] 2025-04-19 04:12:49,012 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-19 06:13:09] 2025-04-19 04:12:49,012 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-19 06:13:09] 2025-04-19 04:12:49,012 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-19 06:13:09] 2025-04-19 04:12:49,013 | INFO     | fitting pss+swap vs Time
[2025-04-19 06:13:09] 2025-04-19 04:12:49,013 | INFO     | sum of square deviations: 115715658.0
[2025-04-19 06:13:09] 2025-04-19 04:12:49,013 | INFO     | sum of deviations: 3384021085.4999986
[2025-04-19 06:13:09] 2025-04-19 04:12:49,013 | INFO     | mean x: 1745033657.5
[2025-04-19 06:13:09] 2025-04-19 04:12:49,013 | INFO     | mean y: 2399388.5416666665
[2025-04-19 06:13:09] 2025-04-19 04:12:49,014 | INFO     | -- intersect: -51029853237.86765
[2025-04-19 06:13:09] 2025-04-19 04:12:49,014 | INFO     | intersect: -51029853237.86765
[2025-04-19 06:13:09] 2025-04-19 04:12:49,014 | INFO     | chi2: 1.0471031969725213
[2025-04-19 06:13:09] 2025-04-19 04:12:49,014 | INFO     | -- intersect: -51029853237.86765
[2025-04-19 06:13:09] 2025-04-19 04:12:49,014 | INFO     | current memory leak: 29.24 B/s (using 72 data points, chi2=1.05)
[2025-04-19 06:13:09] 2025-04-19 04:12:49,014 | INFO     | ..............................
[2025-04-19 06:13:09] 2025-04-19 04:12:49,014 | INFO     | . Timing measurements:
[2025-04-19 06:13:09] 2025-04-19 04:12:49,014 | INFO     | . get job = 0 s
[2025-04-19 06:13:09] 2025-04-19 04:12:49,014 | INFO     | . initial setup = 1 s
[2025-04-19 06:13:09] 2025-04-19 04:12:49,014 | INFO     | . payload setup = 4 s
[2025-04-19 06:13:09] 2025-04-19 04:12:49,014 | INFO     | . stage-in = 0 s
[2025-04-19 06:13:09] 2025-04-19 04:12:49,014 | INFO     | . payload execution = 4774 s
[2025-04-19 06:13:09] 2025-04-19 04:12:49,014 | INFO     | . stage-out = 0 s
[2025-04-19 06:13:09] 2025-04-19 04:12:49,014 | INFO     | . log creation = 0 s
[2025-04-19 06:13:09] 2025-04-19 04:12:49,014 | INFO     | ..............................
[2025-04-19 06:13:09] 2025-04-19 04:12:49,299 | INFO     | 
[2025-04-19 06:13:09] 2025-04-19 04:12:49,299 | INFO     | job summary report
[2025-04-19 06:13:09] 2025-04-19 04:12:49,299 | INFO     | --------------------------------------------------
[2025-04-19 06:13:09] 2025-04-19 04:12:49,299 | INFO     | PanDA job id: 6606130352
[2025-04-19 06:13:09] 2025-04-19 04:12:49,299 | INFO     | task id: 44075483
[2025-04-19 06:13:09] 2025-04-19 04:12:49,299 | INFO     | errors: (none)
[2025-04-19 06:13:09] 2025-04-19 04:12:49,299 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-19 06:13:09] 2025-04-19 04:12:49,299 | INFO     | pilot state: finished 
[2025-04-19 06:13:09] 2025-04-19 04:12:49,299 | INFO     | transexitcode: 0
[2025-04-19 06:13:09] 2025-04-19 04:12:49,299 | INFO     | exeerrorcode: 0
[2025-04-19 06:13:09] 2025-04-19 04:12:49,299 | INFO     | exeerrordiag: 
[2025-04-19 06:13:09] 2025-04-19 04:12:49,299 | INFO     | exitcode: 0
[2025-04-19 06:13:09] 2025-04-19 04:12:49,299 | INFO     | exitmsg: OK
[2025-04-19 06:13:09] 2025-04-19 04:12:49,299 | INFO     | cpuconsumptiontime: 16422 s
[2025-04-19 06:13:09] 2025-04-19 04:12:49,299 | INFO     | nevents: 400
[2025-04-19 06:13:09] 2025-04-19 04:12:49,299 | INFO     | neventsw: 0
[2025-04-19 06:13:09] 2025-04-19 04:12:49,299 | INFO     | pid: 2052718
[2025-04-19 06:13:09] 2025-04-19 04:12:49,300 | INFO     | pgrp: 2052718
[2025-04-19 06:13:09] 2025-04-19 04:12:49,300 | INFO     | corecount: 4
[2025-04-19 06:13:09] 2025-04-19 04:12:49,300 | INFO     | event service: False
[2025-04-19 06:13:09] 2025-04-19 04:12:49,300 | INFO     | sizes: {0: 2426827, 4: 2427033, 11: 2427061, 4781: 2453359, 4782: 2462306, 4783: 2462362, 4790: 2462660}
[2025-04-19 06:13:09] 2025-04-19 04:12:49,300 | INFO     | --------------------------------------------------
[2025-04-19 06:13:09] 2025-04-19 04:12:49,300 | INFO     | 
[2025-04-19 06:13:09] 2025-04-19 04:12:49,300 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-04-19 06:13:09] 2025-04-19 04:12:49,319 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-19 06:13:09] 2025-04-19 04:12:49,319 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-19 06:13:09] 2025-04-19 04:12:49,319 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-19 06:13:09] 2025-04-19 04:12:49,319 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-19 06:13:09] 2025-04-19 04:12:49,319 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-19 06:13:09] 2025-04-19 04:12:49,319 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-19 06:13:09] 2025-04-19 04:12:49,319 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-19 06:13:09] 2025-04-19 04:12:49,319 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-19 06:13:09] 2025-04-19 04:12:49,319 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-19 06:13:09] 2025-04-19 04:12:49,319 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-19 06:13:09] 2025-04-19 04:12:49,319 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-19 06:13:09] 2025-04-19 04:12:49,319 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-19 06:13:09] 2025-04-19 04:12:49,319 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-19 06:13:09] 2025-04-19 04:12:49,320 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-19 06:13:09] 2025-04-19 04:12:49,320 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-19 06:13:09] 2025-04-19 04:12:49,320 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-19 06:13:09] 2025-04-19 04:12:49,320 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-19 06:13:09] 2025-04-19 04:12:49,320 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-19 06:13:09] 2025-04-19 04:12:49,320 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-19 06:13:09] 2025-04-19 04:12:49,320 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-19 06:13:09] 2025-04-19 04:12:49,320 | INFO     | job 6606130352 has completed (purged errors)
[2025-04-19 06:13:09] 2025-04-19 04:12:49,320 | INFO     | overall cleanup function is called
[2025-04-19 06:13:09] 2025-04-19 04:12:50,327 | INFO     | --- collectZombieJob: --- 10, [2052718]
[2025-04-19 06:13:09] 2025-04-19 04:12:50,327 | INFO     | zombie collector waiting for pid 2052718
[2025-04-19 06:13:09] 2025-04-19 04:12:50,327 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-19 06:13:09] 2025-04-19 04:12:50,327 | INFO     | collected zombie processes
[2025-04-19 06:13:09] 2025-04-19 04:12:50,327 | INFO     | will attempt to kill all subprocesses of pid=2052718
[2025-04-19 06:13:09] 2025-04-19 04:12:50,415 | INFO     | process IDs to be killed: [2052718] (in reverse order)
[2025-04-19 06:13:09] 2025-04-19 04:12:50,499 | WARNING  | found no corresponding commands to process id(s)
[2025-04-19 06:13:09] 2025-04-19 04:12:50,499 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-19 06:13:09] 2025-04-19 04:12:50,501 | INFO     | did not find any defunct processes belonging to 2052718
[2025-04-19 06:13:09] 2025-04-19 04:12:50,503 | INFO     | did not find any defunct processes belonging to 2052718
[2025-04-19 06:13:09] 2025-04-19 04:12:50,503 | INFO     | ready for new job
[2025-04-19 06:13:09] 2025-04-19 04:12:50,503 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-19 06:13:09] 2025-04-19 04:12:50,503 | INFO     | **************************************
[2025-04-19 06:13:09] 2025-04-19 04:12:50,503 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-19 06:13:09] 2025-04-19 04:12:50,504 | INFO     | **************************************
[2025-04-19 06:13:09] 2025-04-19 04:12:50,504 | INFO     | 
[2025-04-19 06:13:09] 2025-04-19 04:12:50,504 | INFO     | architecture information:
[2025-04-19 06:13:09] 2025-04-19 04:12:50,504 | INFO     | executing command: cat /etc/os-release
[2025-04-19 06:13:09] 2025-04-19 04:12:50,520 | INFO     | cat /etc/os-release:
[2025-04-19 06:13:09] NAME="CentOS Linux"
[2025-04-19 06:13:09] VERSION="7 (Core)"
[2025-04-19 06:13:09] ID="centos"
[2025-04-19 06:13:09] ID_LIKE="rhel fedora"
[2025-04-19 06:13:09] VERSION_ID="7"
[2025-04-19 06:13:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-19 06:13:09] ANSI_COLOR="0;31"
[2025-04-19 06:13:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-19 06:13:09] HOME_URL="https://www.centos.org/"
[2025-04-19 06:13:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-19 06:13:09] 
[2025-04-19 06:13:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-19 06:13:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-19 06:13:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-19 06:13:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-19 06:13:09] 
[2025-04-19 06:13:09] 2025-04-19 04:12:50,520 | INFO     | **************************************
[2025-04-19 06:13:09] 2025-04-19 04:12:51,023 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-04-19 06:13:09] 2025-04-19 04:12:51,039 | INFO     | sufficient remaining disk space (330190290944 B)
[2025-04-19 06:13:09] 2025-04-19 04:12:51,039 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-19 06:13:09] 2025-04-19 04:12:51,039 | INFO     | current server update state: UPDATING_FINAL
[2025-04-19 06:13:09] 2025-04-19 04:12:51,039 | INFO     | update_server=False
[2025-04-19 06:13:09] 2025-04-19 04:12:51,039 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-19 06:13:09] 2025-04-19 04:12:51,039 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-19 06:13:09] 2025-04-19 04:12:51,040 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-19 06:13:09] 2025-04-19 04:12:51,040 | INFO     | found 0 job(s) in 20 queues
[2025-04-19 06:13:09] 2025-04-19 04:12:51,040 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-19 06:13:09] 2025-04-19 04:12:51,040 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-19 06:13:09] 2025-04-19 04:12:51,040 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-19 06:13:09] 2025-04-19 04:12:51,449 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-04-19 06:13:09] 2025-04-19 04:12:51,450 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-04-19 06:13:09] 2025-04-19 04:12:51,450 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-19 06:13:09] 2025-04-19 04:12:51,450 | INFO     | will abort loop
[2025-04-19 06:13:09] 2025-04-19 04:12:51,535 | INFO     | all job control threads have been joined
[2025-04-19 06:13:09] 2025-04-19 04:12:52,045 | INFO     | [job] retrieve thread has finished
[2025-04-19 06:13:09] 2025-04-19 04:12:52,045 | INFO     | [job] queue monitor thread has finished
[2025-04-19 06:13:09] 2025-04-19 04:12:52,067 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-19 06:13:09] 2025-04-19 04:12:52,140 | INFO     | all data control threads have been joined
[2025-04-19 06:13:09] 2025-04-19 04:12:52,181 | INFO     | [payload] failed_post thread has finished
[2025-04-19 06:13:09] 2025-04-19 04:12:52,193 | INFO     | [payload] validate_post thread has finished
[2025-04-19 06:13:09] 2025-04-19 04:12:52,372 | INFO     | all payload control threads have been joined
[2025-04-19 06:13:09] 2025-04-19 04:12:52,400 | INFO     | [data] copytool_in thread has finished
[2025-04-19 06:13:09] 2025-04-19 04:12:52,454 | INFO     | [job] create_data_payload thread has finished
[2025-04-19 06:13:09] 2025-04-19 04:12:52,455 | INFO     | [job] job monitor thread has finished
[2025-04-19 06:13:09] 2025-04-19 04:12:52,540 | INFO     | [job] control thread has finished
[2025-04-19 06:13:09] 2025-04-19 04:12:52,852 | INFO     | [job] validate thread has finished
[2025-04-19 06:13:09] 2025-04-19 04:12:52,901 | INFO     | [payload] validate_pre thread has finished
[2025-04-19 06:13:09] 2025-04-19 04:12:52,949 | INFO     | [payload] execute_payloads thread has finished
[2025-04-19 06:13:09] 2025-04-19 04:12:53,045 | INFO     | [data] copytool_out thread has finished
[2025-04-19 06:13:09] 2025-04-19 04:12:53,145 | INFO     | [data] control thread has finished
[2025-04-19 06:13:09] 2025-04-19 04:12:53,377 | INFO     | [payload] control thread has finished
[2025-04-19 06:13:09] 2025-04-19 04:12:56,068 | INFO     | [data] queue_monitor thread has finished
[2025-04-19 06:13:09] 2025-04-19 04:13:01,497 | INFO     | job.realtimelogging is not enabled
[2025-04-19 06:13:09] 2025-04-19 04:13:02,502 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-19 06:13:09] 2025-04-19 04:13:03,889 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139819879995200)>', '<ExcThread(monitor, started 139819162265344)>']
[2025-04-19 06:13:09] 2025-04-19 04:13:04,101 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-19 06:13:09] 2025-04-19 04:13:04,101 | INFO     | [monitor] control thread has ended
[2025-04-19 06:13:09] 2025-04-19 04:13:08,911 | INFO     | all workflow threads have been joined
[2025-04-19 06:13:09] 2025-04-19 04:13:08,912 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-19 06:13:09] 2025-04-19 04:13:08,912 | INFO     | traces error code: 0
[2025-04-19 06:13:09] 2025-04-19 04:13:08,912 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-19 06:13:09] 2025-04-19 04:13:08,995 [wrapper] ==== pilot stdout END ====
[2025-04-19 06:13:09] 2025-04-19 04:13:08,999 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-19 06:13:09] 2025-04-19 04:13:09,003 [wrapper] pilotpid: 2046150
[2025-04-19 06:13:09] 2025-04-19 04:13:09,008 [wrapper] Pilot exit status: 0
[2025-04-19 06:13:09] 2025-04-19 04:13:09,019 [wrapper] pandaids: 6606130352
[2025-04-19 06:13:09] 2025-04-19 04:13:09,043 [wrapper] cleanup supervisor_pilot 2065340 2046151
[2025-04-19 06:13:09] 2025-04-19 04:13:09,047 [wrapper] Test setup, not cleaning
[2025-04-19 06:13:09] 2025-04-19 04:13:09,051 [wrapper] apfmon messages muted
[2025-04-19 06:13:09] 2025-04-19 04:13:09,055 [wrapper] ==== wrapper stdout END ====
[2025-04-19 06:13:09] 2025-04-19 04:13:09,059 [wrapper] ==== wrapper stderr END ====
[2025-04-19 06:13:09]  *** Error codes and diagnostics ***
[2025-04-19 06:13:09]     "exeErrorCode": 0,
[2025-04-19 06:13:09]     "exeErrorDiag": "",
[2025-04-19 06:13:09]     "pilotErrorCode": 0,
[2025-04-19 06:13:09]     "pilotErrorDiag": "",
[2025-04-19 06:13:09]  *** Listing of results directory ***
[2025-04-19 06:13:09] total 409476
[2025-04-19 06:13:09] -rw-r--r-- 1 boinc boinc    495897 Apr 18 06:09 pilot3.tar.gz
[2025-04-19 06:13:09] -rwx------ 1 boinc boinc     37140 Apr 18 06:14 runpilot2-wrapper.sh
[2025-04-19 06:13:09] -rw-r--r-- 1 boinc boinc      5111 Apr 18 06:14 queuedata.json
[2025-04-19 06:13:09] -rw-r--r-- 1 boinc boinc       100 Apr 19 04:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-19 06:13:09] -rwxr-xr-x 1 boinc boinc      7986 Apr 19 04:52 run_atlas
[2025-04-19 06:13:09] -rw-r--r-- 1 boinc boinc       105 Apr 19 04:52 job.xml
[2025-04-19 06:13:09] -rw-r--r-- 2 boinc boinc 221618243 Apr 19 04:52 EVNT.44075481._002490.pool.root.1
[2025-04-19 06:13:09] -rw-r--r-- 1 boinc boinc      6861 Apr 19 04:52 init_data.xml
[2025-04-19 06:13:09] drwxrwx--x 2 boinc boinc      4096 Apr 19 04:52 shared
[2025-04-19 06:13:09] -rw-r--r-- 2 boinc boinc    508889 Apr 19 04:52 input.tar.gz
[2025-04-19 06:13:09] -rw-r--r-- 2 boinc boinc     17569 Apr 19 04:52 start_atlas.sh
[2025-04-19 06:13:09] -rw-r--r-- 1 boinc boinc         0 Apr 19 04:52 boinc_lockfile
[2025-04-19 06:13:09] -rw-r--r-- 1 boinc boinc      2579 Apr 19 04:52 pandaJob.out
[2025-04-19 06:13:09] -rw------- 1 boinc boinc       424 Apr 19 04:52 setup.sh.local
[2025-04-19 06:13:09] -rw------- 1 boinc boinc    991292 Apr 19 04:52 agis_schedconf.cvmfs.json
[2025-04-19 06:13:09] -rw------- 1 boinc boinc   1618536 Apr 19 04:52 agis_ddmendpoints.agis.ALL.json
[2025-04-19 06:13:09] drwx------ 4 boinc boinc      4096 Apr 19 04:52 pilot3
[2025-04-19 06:13:09] -rw------- 1 boinc boinc        95 Apr 19 06:12 pilot_heartbeat.json
[2025-04-19 06:13:09] -rw------- 1 boinc boinc 192358054 Apr 19 06:12 HITS.44075483._064074.pool.root.1
[2025-04-19 06:13:09] -rw-r--r-- 1 boinc boinc       530 Apr 19 06:12 boinc_task_state.xml
[2025-04-19 06:13:09] -rw------- 1 boinc boinc      1037 Apr 19 06:12 memory_monitor_summary.json
[2025-04-19 06:13:09] -rw------- 1 boinc boinc    256992 Apr 19 06:12 log.44075483._064074.job.log.tgz.1
[2025-04-19 06:13:09] -rw------- 1 boinc boinc      7685 Apr 19 06:12 heartbeat.json
[2025-04-19 06:13:09] -rw-r--r-- 1 boinc boinc      8192 Apr 19 06:13 boinc_mmap_file
[2025-04-19 06:13:09] -rw-r--r-- 1 boinc boinc        27 Apr 19 06:13 wrapper_checkpoint.txt
[2025-04-19 06:13:09] -rw------- 1 boinc boinc      4738 Apr 19 06:13 pilotlog.txt
[2025-04-19 06:13:09] -rw------- 1 boinc boinc    469051 Apr 19 06:13 log.44075483._064074.job.log.1
[2025-04-19 06:13:09] -rw------- 1 boinc boinc       357 Apr 19 06:13 output.list
[2025-04-19 06:13:09] -rw-r--r-- 1 boinc boinc       620 Apr 19 06:13 runtime_log
[2025-04-19 06:13:09] -rw------- 1 boinc boinc    747520 Apr 19 06:13 result.tar.gz
[2025-04-19 06:13:09] -rw------- 1 boinc boinc       660 Apr 19 06:13 zEyLDmvIsP7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmJOeLDmvSCekn.diag
[2025-04-19 06:13:09] -rw-r--r-- 1 boinc boinc     11104 Apr 19 06:13 runtime_log.err
[2025-04-19 06:13:09] -rw-r--r-- 1 boinc boinc     21815 Apr 19 06:13 stderr.txt
[2025-04-19 06:13:09] HITS file was successfully produced:
[2025-04-19 06:13:09] -rw------- 1 boinc boinc 192358054 Apr 19 06:12 shared/HITS.pool.root.1
[2025-04-19 06:13:09]  *** Contents of shared directory: ***
[2025-04-19 06:13:09] total 405540
[2025-04-19 06:13:09] -rw-r--r-- 2 boinc boinc 221618243 Apr 19 04:52 ATLAS.root_0
[2025-04-19 06:13:09] -rw-r--r-- 2 boinc boinc    508889 Apr 19 04:52 input.tar.gz
[2025-04-19 06:13:09] -rw-r--r-- 2 boinc boinc     17569 Apr 19 04:52 start_atlas.sh
[2025-04-19 06:13:09] -rw------- 1 boinc boinc 192358054 Apr 19 06:12 HITS.pool.root.1
[2025-04-19 06:13:09] -rw------- 1 boinc boinc    747520 Apr 19 06:13 result.tar.gz
06:13:11 (2042440): run_atlas exited; CPU time 16406.373732
06:13:11 (2042440): called boinc_finish(0)

</stderr_txt>
]]>

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