Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-19 15:40:22 (11576): Detected: vboxwrapper 26206
2025-04-19 15:40:22 (11576): Detected: BOINC client v8.0.2
2025-04-19 15:40:23 (11576): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-04-19 15:40:23 (11576): Successfully copied 'init_data.xml' to the shared directory.
2025-04-19 15:40:23 (11576): Create VM. (boinc_20aba952c7a05a6b, slot#0)
2025-04-19 15:40:24 (11576): Setting Memory Size for VM. (4400MB)
2025-04-19 15:40:24 (11576): Setting CPU Count for VM. (4)
2025-04-19 15:40:24 (11576): Setting Chipset Options for VM.
2025-04-19 15:40:25 (11576): Setting Graphics Controller Options for VM.
2025-04-19 15:40:25 (11576): Setting Boot Options for VM.
2025-04-19 15:40:25 (11576): Setting Network Configuration for NAT.
2025-04-19 15:40:26 (11576): Enabling VM Network Access.
2025-04-19 15:40:26 (11576): Disabling USB Support for VM.
2025-04-19 15:40:26 (11576): Disabling COM Port Support for VM.
2025-04-19 15:40:26 (11576): Disabling LPT Port Support for VM.
2025-04-19 15:40:27 (11576): Disabling Audio Support for VM.
2025-04-19 15:40:27 (11576): Disabling Clipboard Support for VM.
2025-04-19 15:40:27 (11576): Disabling Drag and Drop Support for VM.
2025-04-19 15:40:27 (11576): Adding storage controller(s) to VM.
2025-04-19 15:40:28 (11576): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-19 15:40:31 (11576): Adding VirtualBox Guest Additions to VM.
2025-04-19 15:40:31 (11576): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-19 15:40:31 (11576): forwarding host port 64397 to guest port 80
2025-04-19 15:40:31 (11576): Enabling remote desktop for VM.
2025-04-19 15:40:32 (11576): Required extension pack not installed, remote desktop not enabled.
2025-04-19 15:40:32 (11576): Enabling shared directory for VM.
2025-04-19 15:40:32 (11576): Starting VM using VBoxManage interface. (boinc_20aba952c7a05a6b, slot#0)
2025-04-19 15:40:38 (11576): Successfully started VM. (PID = '10468')
2025-04-19 15:40:38 (11576): Reporting VM Process ID to BOINC.
2025-04-19 15:40:38 (11576): Guest Log: BIOS: VirtualBox 7.1.6
2025-04-19 15:40:38 (11576): Guest Log: CPUID EDX: 0x178bfbff
2025-04-19 15:40:38 (11576): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-19 15:40:38 (11576): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-19 15:40:38 (11576): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-19 15:40:38 (11576): Detected: Web Application Enabled (http://localhost:64397)
2025-04-19 15:40:38 (11576): Preference change detected
2025-04-19 15:40:38 (11576): Setting CPU throttle for VM. (100%)
2025-04-19 15:40:38 (11576): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-19 15:40:40 (11576): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-19 15:40:40 (11576): Guest Log: BIOS: Booting from Hard Disk...
2025-04-19 15:40:43 (11576): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-19 15:40:43 (11576): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-19 15:40:43 (11576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-19 15:40:43 (11576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-19 15:40:43 (11576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-19 15:40:43 (11576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-19 15:40:43 (11576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-19 15:40:43 (11576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-19 15:40:43 (11576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-19 15:40:43 (11576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-19 15:40:43 (11576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-19 15:40:43 (11576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-19 15:40:43 (11576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-19 15:40:43 (11576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-19 15:40:43 (11576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-19 15:40:43 (11576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-19 15:40:43 (11576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-19 15:40:43 (11576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-19 15:40:43 (11576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-19 15:40:43 (11576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-19 15:40:43 (11576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-19 15:40:43 (11576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-19 15:40:43 (11576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-19 15:40:43 (11576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-19 15:40:43 (11576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-19 15:40:43 (11576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-19 15:40:43 (11576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-19 15:40:43 (11576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-19 15:40:43 (11576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-19 15:40:43 (11576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-19 15:40:43 (11576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-19 15:40:43 (11576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-19 15:40:50 (11576): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-19 15:40:50 (11576): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-19 15:40:59 (11576): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-19 15:40:59 (11576): Guest Log: 00:00:00.000218 main     Log opened 2025-04-19T15:40:58.193954000Z
2025-04-19 15:40:59 (11576): Guest Log: 00:00:00.000347 main     OS Product: Linux
2025-04-19 15:40:59 (11576): Guest Log: 00:00:00.000389 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-19 15:40:59 (11576): Guest Log: 00:00:00.000427 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-19 15:40:59 (11576): Guest Log: 00:00:00.000465 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-19 15:40:59 (11576): Guest Log: 00:00:00.000467 main     Process ID: 1312
2025-04-19 15:40:59 (11576): Guest Log: 00:00:00.000468 main     Package type: LINUX_64BITS_GENERIC
2025-04-19 15:40:59 (11576): Guest Log: 00:00:00.001672 main     5.2.32 r132073 started. Verbose level = 0
2025-04-19 15:40:59 (11576): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-19 15:40:59 (11576): Guest Log: [INFO] Mounting shared directory
2025-04-19 15:40:59 (11576): Guest Log: [INFO] Checking for init_data.xml
2025-04-19 15:41:07 (11576): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-19 15:41:07 (11576): Guest Log: [INFO] Detected branch: prod
2025-04-19 15:41:07 (11576): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-19 15:41:07 (11576): Guest Log: Copying input files
2025-04-19 15:41:09 (11576): Guest Log: Copied input files into RunAtlas.
2025-04-19 15:41:09 (11576): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-19 15:41:09 (11576): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-19 15:41:09 (11576): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-19 15:41:09 (11576): Guest Log: Further information can be found at the LHC@home message board.
2025-04-19 15:41:09 (11576): Guest Log: 00:00:10.004501 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 798 515 000ns (GuestNow=1 745 070 069 398 318 000 ns GuestLast=1 745 077 258 196 833 000 ns fSetTimeLastLoop=true )
2025-04-19 15:41:18 (11576): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-19 15:41:18 (11576): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-19 15:41:18 (11576): Guest Log: 2.6.3.0 1606 0 32024 145039 3 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-19 15:41:19 (11576): Guest Log: copied the webapp to /var/www
2025-04-19 15:41:19 (11576): Guest Log: ATHENA_PROC_NUMBER=4
2025-04-19 15:41:19 (11576): Guest Log: ATHENA_CORE_NUMBER=4
2025-04-19 15:41:20 (11576): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-19 15:41:20 (11576): Guest Log:  *** Starting ATLAS job. (PandaID=6606461193 taskID=44075483) ***
2025-04-19 17:25:38 (11576): Status Report: Elapsed Time: '6000.891954'
2025-04-19 17:25:38 (11576): Status Report: CPU Time: '20027.625000'
2025-04-19 19:12:08 (11576): Status Report: Elapsed Time: '12005.473053'
2025-04-19 19:12:08 (11576): Status Report: CPU Time: '45326.359375'
2025-04-19 20:58:35 (11576): Status Report: Elapsed Time: '18005.970015'
2025-04-19 20:58:35 (11576): Status Report: CPU Time: '70553.000000'
2025-04-19 21:23:33 (11576): Guest Log:  *** Job finished ***
2025-04-19 21:23:33 (11576): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-19 21:23:33 (11576): Guest Log: 2025-04-19 19:23:21,543 | INFO     | [payload] failed_post thread has finished
2025-04-19 21:23:33 (11576): Guest Log: 2025-04-19 19:23:21,708 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-04-19 21:23:33 (11576): Guest Log: 2025-04-19 19:23:25,742 | INFO     | [data] queue_monitor thread has finished
2025-04-19 21:23:33 (11576): Guest Log: 2025-04-19 19:23:26,778 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140467366647616)>', '<ExcThread(monitor, started 140466670515968)>']
2025-04-19 21:23:33 (11576): Guest Log: 2025-04-19 19:23:27,862 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-19 21:23:33 (11576): Guest Log: 2025-04-19 19:23:27,862 | INFO     | [monitor] control thread has ended
2025-04-19 21:23:33 (11576): Guest Log: 2025-04-19 19:23:31,841 | INFO     | all workflow threads have been joined
2025-04-19 21:23:33 (11576): Guest Log: 2025-04-19 19:23:31,842 | INFO     | end of generic workflow (traces error code: 0)
2025-04-19 21:23:33 (11576): Guest Log: 2025-04-19 19:23:31,842 | INFO     | traces error code: 0
2025-04-19 21:23:33 (11576): Guest Log: 2025-04-19 19:23:31,843 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-19 21:23:33 (11576): Guest Log: 2025-04-19 19:23:31,985 [wrapper] ==== pilot stdout END ====
2025-04-19 21:23:33 (11576): Guest Log: 2025-04-19 19:23:31,990 [wrapper] ==== wrapper stdout RESUME ====
2025-04-19 21:23:33 (11576): Guest Log: 2025-04-19 19:23:31,995 [wrapper] pilotpid: 5932
2025-04-19 21:23:33 (11576): Guest Log: 2025-04-19 19:23:32,000 [wrapper] Pilot exit status: 0
2025-04-19 21:23:33 (11576): Guest Log: 2025-04-19 19:23:32,329 [wrapper] pandaids: 6606461193
2025-04-19 21:23:33 (11576): Guest Log: 2025-04-19 19:23:32,389 [wrapper] cleanup supervisor_pilot 21694 5933
2025-04-19 21:23:33 (11576): Guest Log: 2025-04-19 19:23:32,395 [wrapper] Test setup, not cleaning
2025-04-19 21:23:33 (11576): Guest Log: 2025-04-19 19:23:32,401 [wrapper] apfmon messages muted
2025-04-19 21:23:33 (11576): Guest Log: 2025-04-19 19:23:32,406 [wrapper] ==== wrapper stdout END ====
2025-04-19 21:23:33 (11576): Guest Log: 2025-04-19 19:23:32,411 [wrapper] ==== wrapper stderr END ====
2025-04-19 21:23:33 (11576): Guest Log:  *** Error codes and diagnostics ***
2025-04-19 21:23:33 (11576): Guest Log:     "exeErrorCode": 0,
2025-04-19 21:23:33 (11576): Guest Log:     "exeErrorDiag": "",
2025-04-19 21:23:33 (11576): Guest Log:     "pilotErrorCode": 0,
2025-04-19 21:23:33 (11576): Guest Log:     "pilotErrorDiag": "",
2025-04-19 21:23:33 (11576): Guest Log:  *** Listing of results directory ***
2025-04-19 21:23:33 (11576): Guest Log: total 201368
2025-04-19 21:23:33 (11576): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 18 12:26 pilot3.tar.gz
2025-04-19 21:23:33 (11576): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 18 12:43 runpilot2-wrapper.sh
2025-04-19 21:23:33 (11576): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 18 12:43 queuedata.json
2025-04-19 21:23:33 (11576): Guest Log: -rwxr-xr-x. 1 atlas atlas     13234 Apr 19 13:41 init_data.xml
2025-04-19 21:23:33 (11576): Guest Log: -rwxr-xr-x. 1 atlas atlas    508889 Apr 19 13:41 input.tar.gz
2025-04-19 21:23:33 (11576): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 19 13:41 start_atlas.sh
2025-04-19 21:23:33 (11576): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 19 13:41 EVNT.44075481._002694.pool.root.1 -> /data/./ATLAS.root_0
2025-04-19 21:23:33 (11576): Guest Log: -rw-r--r--. 1 atlas atlas      2578 Apr 19 13:41 pandaJob.out
2025-04-19 21:23:33 (11576): Guest Log: -rw-------. 1 atlas atlas       424 Apr 19 13:41 setup.sh.local
2025-04-19 21:23:33 (11576): Guest Log: -rw-------. 1 atlas atlas    991292 Apr 19 13:42 agis_schedconf.cvmfs.json
2025-04-19 21:23:33 (11576): Guest Log: drwx------. 4 atlas atlas      4096 Apr 19 13:43 pilot3
2025-04-19 21:23:33 (11576): Guest Log: -rw-------. 1 atlas atlas 198271647 Apr 19 19:22 HITS.44075483._069342.pool.root.1
2025-04-19 21:23:33 (11576): Guest Log: -rw-------. 1 atlas atlas      1034 Apr 19 19:23 memory_monitor_summary.json
2025-04-19 21:23:33 (11576): Guest Log: -rw-------. 1 atlas atlas   1618536 Apr 19 19:23 agis_ddmendpoints.agis.ALL.json
2025-04-19 21:23:33 (11576): Guest Log: -rw-------. 1 atlas atlas    374091 Apr 19 19:23 log.44075483._069342.job.log.tgz.1
2025-04-19 21:23:33 (11576): Guest Log: -rw-------. 1 atlas atlas      7704 Apr 19 19:23 heartbeat.json
2025-04-19 21:23:33 (11576): Guest Log: -rw-------. 1 atlas atlas        95 Apr 19 19:23 pilot_heartbeat.json
2025-04-19 21:23:33 (11576): Guest Log: -rw-------. 1 atlas atlas      4413 Apr 19 19:23 pilotlog.txt
2025-04-19 21:23:33 (11576): Guest Log: -rw-------. 1 atlas atlas   1683798 Apr 19 19:23 log.44075483._069342.job.log.1
2025-04-19 21:23:33 (11576): Guest Log: -rw-------. 1 atlas atlas       357 Apr 19 19:23 output.list
2025-04-19 21:23:33 (11576): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 19 19:23 runtime_log
2025-04-19 21:23:33 (11576): Guest Log: -rw-------. 1 atlas atlas   2078720 Apr 19 19:23 result.tar.gz
2025-04-19 21:23:33 (11576): Guest Log: -rw-r--r--. 1 atlas atlas     10920 Apr 19 19:23 runtime_log.err
2025-04-19 21:23:33 (11576): Guest Log: -rw-------. 1 atlas atlas       654 Apr 19 19:23 hzfMDmVF0P7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmrA5KDmY9iXNn.diag
2025-04-19 21:23:33 (11576): Guest Log: Looking for outputfile HITS.44075483._069342.pool.root.1
2025-04-19 21:23:33 (11576): Guest Log: HITS file was successfully produced
2025-04-19 21:23:33 (11576): Guest Log: -rw-------. 1 atlas atlas 198271647 Apr 19 19:22 /home/atlas/RunAtlas/HITS.44075483._069342.pool.root.1
2025-04-19 21:23:34 (11576): Guest Log: Successfully finished the ATLAS job!
2025-04-19 21:23:34 (11576): Guest Log: Copying the results back to the shared directory!
2025-04-19 21:23:34 (11576): Guest Log:  *** Contents of shared directory: ***
2025-04-19 21:23:34 (11576): Guest Log: total 414516
2025-04-19 21:23:34 (11576): Guest Log: -rwxrwxrwx. 1 root root 223556428 Apr 19 13:40 ATLAS.root_0
2025-04-19 21:23:34 (11576): Guest Log: -rwxrwxrwx. 1 root root 198271647 Apr 19 19:23 HITS.pool.root.1
2025-04-19 21:23:34 (11576): Guest Log: -rwxrwxrwx. 1 root root     13234 Apr 19 13:40 init_data.xml
2025-04-19 21:23:34 (11576): Guest Log: -rwxrwxrwx. 1 root root    508889 Apr 18 16:11 input.tar.gz
2025-04-19 21:23:34 (11576): Guest Log: -rwxrwxrwx. 1 root root   2078720 Apr 19 19:23 result.tar.gz
2025-04-19 21:23:34 (11576): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 18 16:11 start_atlas.sh
2025-04-19 21:23:34 (11576): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-19 21:23:34 (11576): VM Completion File Detected.
2025-04-19 21:23:34 (11576): Powering off VM.
2025-04-19 21:23:35 (11576): Successfully stopped VM.
2025-04-19 21:23:35 (11576): Deregistering VM. (boinc_20aba952c7a05a6b, slot#0)
2025-04-19 21:23:35 (11576): Removing network bandwidth throttle group from VM.
2025-04-19 21:23:35 (11576): Removing VM from VirtualBox.
21:23:41 (11576): called boinc_finish(0)

</stderr_txt>
]]>

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