Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:08:58 (27493): wrapper (7.7.26015): starting
11:08:58 (27493): wrapper: running run_atlas (--nthreads 12)
[2025-04-18 11:08:58] Arguments: --nthreads 12
[2025-04-18 11:08:58] Threads: 12
[2025-04-18 11:08:58] Checking for CVMFS
[2025-04-18 11:08:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-18 11:08:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-18 11:08:58] Running cvmfs_config stat atlas.cern.ch
[2025-04-18 11:08:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-18 11:08:58] 2.11.2.0 5876 86608 149156 145005 0 62 18691846 20275200 1 130560 0 22671808 99.969 7244171 52170 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-18 11:08:58] CVMFS is ok
[2025-04-18 11:08:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-18 11:08:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-18 11:08:58] Further information can be found at the LHC@home message board.
[2025-04-18 11:08:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-18 11:08:58] Checking for apptainer binary...
[2025-04-18 11:08:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-18 11:08:58] Running /usr/bin/apptainer --version
[2025-04-18 11:08:58] apptainer version 1.3.2-1.el7
[2025-04-18 11:08:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-18 11:09:00] c-205-31.aglt2.org
[2025-04-18 11:09:00] apptainer works
[2025-04-18 11:09:00] Set ATHENA_PROC_NUMBER=12
[2025-04-18 11:09:00] Set ATHENA_CORE_NUMBER=12
[2025-04-18 11:09:00] Starting ATLAS job with PandaID=6606430836
[2025-04-18 11:09:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-18 12:34:36]  *** The last 200 lines of the pilot log: ***
[2025-04-18 12:34:36]  protocol_id=None
[2025-04-18 12:34:36]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-18 12:34:36]  replicas=None
[2025-04-18 12:34:36]  scope=mc23_13p6TeV
[2025-04-18 12:34:36]  status=None
[2025-04-18 12:34:36]  status_code=0
[2025-04-18 12:34:36]  storage_token=
[2025-04-18 12:34:36]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6606430836/log.44075483._068764.job.log.tgz.1
[2025-04-18 12:34:36]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d7/2f/log.44075483._068764.job.log.tgz.1
[2025-04-18 12:34:36]  workdir=None
[2025-04-18 12:34:36] ]
[2025-04-18 12:34:36] 2025-04-18 16:34:07,683 | INFO     | transferring file log.44075483._068764.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6606430836/log.44075483._068764.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-04-18 12:34:36] 2025-04-18 16:34:07,683 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6606430836/log.44075483._068764.job.log.tgz.1 /tmp/boinchome/slots/0/log.44075483._068764.job
[2025-04-18 12:34:36] 2025-04-18 16:34:07,706 | INFO     | adding to output.list: log.44075483._068764.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d7/2f/log.44075483._068764.job.log.tg
[2025-04-18 12:34:36] 2025-04-18 16:34:07,707 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-18 12:34:36] 2025-04-18 16:34:07,708 | INFO     | summary of transferred files:
[2025-04-18 12:34:36] 2025-04-18 16:34:07,708 | INFO     |  -- lfn=log.44075483._068764.job.log.tgz.1, status_code=0, status=transferred
[2025-04-18 12:34:36] 2025-04-18 16:34:07,708 | INFO     | stage-out finished correctly
[2025-04-18 12:34:36] 2025-04-18 16:34:09,913 | INFO     | monitor loop #382: job 0:6606430836 is in state 'finished'
[2025-04-18 12:34:36] 2025-04-18 16:34:09,913 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-18 12:34:36] 2025-04-18 16:34:10,590 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-18 12:34:36] 2025-04-18 16:34:12,421 | INFO     | monitor loop #383: job 0:6606430836 is in state 'finished'
[2025-04-18 12:34:36] 2025-04-18 16:34:12,422 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-18 12:34:36] 2025-04-18 16:34:12,688 | INFO     | job 6606430836 has state=finished
[2025-04-18 12:34:36] 2025-04-18 16:34:12,688 | INFO     | preparing for final server update for job 6606430836 in state='finished'
[2025-04-18 12:34:36] 2025-04-18 16:34:12,689 | INFO     | this job has now completed (state=finished)
[2025-04-18 12:34:36] 2025-04-18 16:34:12,689 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-18 12:34:36] 2025-04-18 16:34:12,689 | INFO     | log transfer has been attempted: DONE
[2025-04-18 12:34:36] 2025-04-18 16:34:12,689 | INFO     | job 6606430836 has finished - writing final server update
[2025-04-18 12:34:36] 2025-04-18 16:34:12,690 | INFO     | total number of processed events: 400 (read)
[2025-04-18 12:34:36] 2025-04-18 16:34:12,691 | INFO     | executing command: lscpu
[2025-04-18 12:34:36] 2025-04-18 16:34:12,720 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-18 12:34:36] 2025-04-18 16:34:13,812 | INFO     | PID=31159 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-04-18 12:34:36] 2025-04-18 16:34:14,925 | INFO     | monitor loop #384: job 0:6606430836 is in state 'finished'
[2025-04-18 12:34:36] 2025-04-18 16:34:14,925 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-18 12:34:36] 2025-04-18 16:34:17,450 | INFO     | monitor loop #385: job 0:6606430836 is in state 'finished'
[2025-04-18 12:34:36] 2025-04-18 16:34:17,450 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-18 12:34:36] 2025-04-18 16:34:17,542 | INFO     | CPU arch script returned: x86-64-v2
[2025-04-18 12:34:36] 2025-04-18 16:34:17,542 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6606430836/memory_monitor_summary.json (trf name=prmon)
[2025-04-18 12:34:36] 2025-04-18 16:34:17,544 | INFO     | extracted standard info from prmon json
[2025-04-18 12:34:36] 2025-04-18 16:34:17,544 | INFO     | extracted standard memory fields from prmon json
[2025-04-18 12:34:36] 2025-04-18 16:34:17,544 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-18 12:34:36] 2025-04-18 16:34:17,545 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-18 12:34:36] 2025-04-18 16:34:17,545 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-18 12:34:36] 2025-04-18 16:34:17,547 | INFO     | fitting pss+swap vs Time
[2025-04-18 12:34:36] 2025-04-18 16:34:17,548 | INFO     | sum of square deviations: 136095575.0
[2025-04-18 12:34:36] 2025-04-18 16:34:17,548 | INFO     | sum of deviations: 24695511480.5
[2025-04-18 12:34:36] 2025-04-18 16:34:17,548 | INFO     | mean x: 1744991575.5
[2025-04-18 12:34:36] 2025-04-18 16:34:17,548 | INFO     | mean y: 2550816.8289473685
[2025-04-18 12:34:36] 2025-04-18 16:34:17,549 | INFO     | -- intersect: -316638599978.3827
[2025-04-18 12:34:36] 2025-04-18 16:34:17,549 | INFO     | intersect: -316638599978.3827
[2025-04-18 12:34:36] 2025-04-18 16:34:17,549 | INFO     | chi2: 2.478434351956827
[2025-04-18 12:34:36] 2025-04-18 16:34:17,549 | INFO     | -- intersect: -316638599978.3827
[2025-04-18 12:34:36] 2025-04-18 16:34:17,549 | INFO     | current memory leak: 181.46 B/s (using 76 data points, chi2=2.48)
[2025-04-18 12:34:36] 2025-04-18 16:34:17,550 | INFO     | ..............................
[2025-04-18 12:34:36] 2025-04-18 16:34:17,550 | INFO     | . Timing measurements:
[2025-04-18 12:34:36] 2025-04-18 16:34:17,550 | INFO     | . get job = 0 s
[2025-04-18 12:34:36] 2025-04-18 16:34:17,550 | INFO     | . initial setup = 2 s
[2025-04-18 12:34:36] 2025-04-18 16:34:17,550 | INFO     | . payload setup = 7 s
[2025-04-18 12:34:36] 2025-04-18 16:34:17,550 | INFO     | . stage-in = 0 s
[2025-04-18 12:34:36] 2025-04-18 16:34:17,550 | INFO     | . payload execution = 5066 s
[2025-04-18 12:34:36] 2025-04-18 16:34:17,551 | INFO     | . stage-out = 0 s
[2025-04-18 12:34:36] 2025-04-18 16:34:17,551 | INFO     | . log creation = 0 s
[2025-04-18 12:34:36] 2025-04-18 16:34:17,551 | INFO     | ..............................
[2025-04-18 12:34:36] 2025-04-18 16:34:17,757 | INFO     | 
[2025-04-18 12:34:36] 2025-04-18 16:34:17,757 | INFO     | job summary report
[2025-04-18 12:34:36] 2025-04-18 16:34:17,757 | INFO     | --------------------------------------------------
[2025-04-18 12:34:36] 2025-04-18 16:34:17,757 | INFO     | PanDA job id: 6606430836
[2025-04-18 12:34:36] 2025-04-18 16:34:17,757 | INFO     | task id: 44075483
[2025-04-18 12:34:36] 2025-04-18 16:34:17,758 | INFO     | errors: (none)
[2025-04-18 12:34:36] 2025-04-18 16:34:17,758 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-18 12:34:36] 2025-04-18 16:34:17,758 | INFO     | pilot state: finished 
[2025-04-18 12:34:36] 2025-04-18 16:34:17,758 | INFO     | transexitcode: 0
[2025-04-18 12:34:36] 2025-04-18 16:34:17,758 | INFO     | exeerrorcode: 0
[2025-04-18 12:34:36] 2025-04-18 16:34:17,758 | INFO     | exeerrordiag: 
[2025-04-18 12:34:36] 2025-04-18 16:34:17,759 | INFO     | exitcode: 0
[2025-04-18 12:34:36] 2025-04-18 16:34:17,759 | INFO     | exitmsg: OK
[2025-04-18 12:34:36] 2025-04-18 16:34:17,759 | INFO     | cpuconsumptiontime: 47035 s
[2025-04-18 12:34:36] 2025-04-18 16:34:17,759 | INFO     | nevents: 400
[2025-04-18 12:34:36] 2025-04-18 16:34:17,759 | INFO     | neventsw: 0
[2025-04-18 12:34:36] 2025-04-18 16:34:17,759 | INFO     | pid: 5337
[2025-04-18 12:34:36] 2025-04-18 16:34:17,759 | INFO     | pgrp: 5337
[2025-04-18 12:34:36] 2025-04-18 16:34:17,760 | INFO     | corecount: 12
[2025-04-18 12:34:36] 2025-04-18 16:34:17,760 | INFO     | event service: False
[2025-04-18 12:34:36] 2025-04-18 16:34:17,760 | INFO     | sizes: {0: 2426773, 5: 2426979, 11: 2427035, 5077: 2453211, 5078: 2462152, 5081: 2462208, 5088: 2462506}
[2025-04-18 12:34:36] 2025-04-18 16:34:17,760 | INFO     | --------------------------------------------------
[2025-04-18 12:34:36] 2025-04-18 16:34:17,760 | INFO     | 
[2025-04-18 12:34:36] 2025-04-18 16:34:17,760 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-04-18 12:34:36] 2025-04-18 16:34:17,785 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-18 12:34:36] 2025-04-18 16:34:17,785 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-18 12:34:36] 2025-04-18 16:34:17,785 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-18 12:34:36] 2025-04-18 16:34:17,785 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-18 12:34:36] 2025-04-18 16:34:17,786 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-18 12:34:36] 2025-04-18 16:34:17,786 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-18 12:34:36] 2025-04-18 16:34:17,786 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-18 12:34:36] 2025-04-18 16:34:17,786 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-18 12:34:36] 2025-04-18 16:34:17,786 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-18 12:34:36] 2025-04-18 16:34:17,786 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-18 12:34:36] 2025-04-18 16:34:17,787 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-18 12:34:36] 2025-04-18 16:34:17,787 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-18 12:34:36] 2025-04-18 16:34:17,787 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-18 12:34:36] 2025-04-18 16:34:17,787 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-18 12:34:36] 2025-04-18 16:34:17,787 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-18 12:34:36] 2025-04-18 16:34:17,787 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-18 12:34:36] 2025-04-18 16:34:17,788 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-18 12:34:36] 2025-04-18 16:34:17,788 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-18 12:34:36] 2025-04-18 16:34:17,788 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-18 12:34:36] 2025-04-18 16:34:17,788 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-18 12:34:36] 2025-04-18 16:34:17,788 | INFO     | job 6606430836 has completed (purged errors)
[2025-04-18 12:34:36] 2025-04-18 16:34:17,788 | INFO     | overall cleanup function is called
[2025-04-18 12:34:36] 2025-04-18 16:34:18,796 | INFO     | --- collectZombieJob: --- 10, [5337]
[2025-04-18 12:34:36] 2025-04-18 16:34:18,796 | INFO     | zombie collector waiting for pid 5337
[2025-04-18 12:34:36] 2025-04-18 16:34:18,797 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-18 12:34:36] 2025-04-18 16:34:18,797 | INFO     | collected zombie processes
[2025-04-18 12:34:36] 2025-04-18 16:34:18,797 | INFO     | will attempt to kill all subprocesses of pid=5337
[2025-04-18 12:34:36] 2025-04-18 16:34:18,824 | INFO     | 5108s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-04-18 12:34:36] 2025-04-18 16:34:18,889 | INFO     | process IDs to be killed: [5337] (in reverse order)
[2025-04-18 12:34:36] 2025-04-18 16:34:18,940 | WARNING  | found no corresponding commands to process id(s)
[2025-04-18 12:34:36] 2025-04-18 16:34:18,940 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-18 12:34:36] 2025-04-18 16:34:18,944 | INFO     | did not find any defunct processes belonging to 5337
[2025-04-18 12:34:36] 2025-04-18 16:34:18,947 | INFO     | did not find any defunct processes belonging to 5337
[2025-04-18 12:34:36] 2025-04-18 16:34:18,947 | INFO     | ready for new job
[2025-04-18 12:34:36] 2025-04-18 16:34:18,948 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-18 12:34:36] 2025-04-18 16:34:18,949 | INFO     | **************************************
[2025-04-18 12:34:36] 2025-04-18 16:34:18,949 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-18 12:34:36] 2025-04-18 16:34:18,949 | INFO     | **************************************
[2025-04-18 12:34:36] 2025-04-18 16:34:18,950 | INFO     | 
[2025-04-18 12:34:36] 2025-04-18 16:34:18,950 | INFO     | architecture information:
[2025-04-18 12:34:36] 2025-04-18 16:34:18,951 | INFO     | executing command: cat /etc/os-release
[2025-04-18 12:34:36] 2025-04-18 16:34:18,965 | INFO     | cat /etc/os-release:
[2025-04-18 12:34:36] NAME="CentOS Linux"
[2025-04-18 12:34:36] VERSION="7 (Core)"
[2025-04-18 12:34:36] ID="centos"
[2025-04-18 12:34:36] ID_LIKE="rhel fedora"
[2025-04-18 12:34:36] VERSION_ID="7"
[2025-04-18 12:34:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-18 12:34:36] ANSI_COLOR="0;31"
[2025-04-18 12:34:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-18 12:34:36] HOME_URL="https://www.centos.org/"
[2025-04-18 12:34:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-18 12:34:36] 
[2025-04-18 12:34:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-18 12:34:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-18 12:34:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-18 12:34:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-18 12:34:36] 
[2025-04-18 12:34:36] 2025-04-18 16:34:18,966 | INFO     | **************************************
[2025-04-18 12:34:36] 2025-04-18 16:34:19,468 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-04-18 12:34:36] 2025-04-18 16:34:19,485 | INFO     | sufficient remaining disk space (29399973888 B)
[2025-04-18 12:34:36] 2025-04-18 16:34:19,485 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-18 12:34:36] 2025-04-18 16:34:19,486 | INFO     | current server update state: UPDATING_FINAL
[2025-04-18 12:34:36] 2025-04-18 16:34:19,486 | INFO     | update_server=False
[2025-04-18 12:34:36] 2025-04-18 16:34:19,486 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-18 12:34:36] 2025-04-18 16:34:19,486 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-18 12:34:36] 2025-04-18 16:34:19,830 | INFO     | found 0 job(s) in 20 queues
[2025-04-18 12:34:36] 2025-04-18 16:34:19,830 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-18 12:34:36] 2025-04-18 16:34:19,831 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-18 12:34:36] 2025-04-18 16:34:19,953 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-04-18 12:34:36] 2025-04-18 16:34:19,953 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-04-18 12:34:36] 2025-04-18 16:34:19,959 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-18 12:34:36] 2025-04-18 16:34:19,959 | INFO     | will abort loop
[2025-04-18 12:34:36] 2025-04-18 16:34:19,969 | INFO     | all data control threads have been joined
[2025-04-18 12:34:36] 2025-04-18 16:34:20,119 | INFO     | all payload control threads have been joined
[2025-04-18 12:34:36] 2025-04-18 16:34:20,491 | INFO     | [job] retrieve thread has finished
[2025-04-18 12:34:36] 2025-04-18 16:34:20,492 | INFO     | [job] queue monitor thread has finished
[2025-04-18 12:34:36] 2025-04-18 16:34:20,662 | INFO     | [job] create_data_payload thread has finished
[2025-04-18 12:34:36] 2025-04-18 16:34:20,751 | INFO     | [payload] validate_post thread has finished
[2025-04-18 12:34:36] 2025-04-18 16:34:20,813 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-18 12:34:36] 2025-04-18 16:34:20,963 | INFO     | [job] job monitor thread has finished
[2025-04-18 12:34:36] 2025-04-18 16:34:20,975 | INFO     | [data] control thread has finished
[2025-04-18 12:34:36] 2025-04-18 16:34:21,050 | INFO     | all job control threads have been joined
[2025-04-18 12:34:36] 2025-04-18 16:34:21,071 | INFO     | [payload] validate_pre thread has finished
[2025-04-18 12:34:36] 2025-04-18 16:34:21,125 | INFO     | [payload] control thread has finished
[2025-04-18 12:34:36] 2025-04-18 16:34:21,183 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-18 12:34:36] 2025-04-18 16:34:21,346 | INFO     | [data] copytool_in thread has finished
[2025-04-18 12:34:36] 2025-04-18 16:34:21,367 | INFO     | [payload] execute_payloads thread has finished
[2025-04-18 12:34:36] 2025-04-18 16:34:21,709 | INFO     | [payload] failed_post thread has finished
[2025-04-18 12:34:36] 2025-04-18 16:34:21,855 | INFO     | [job] validate thread has finished
[2025-04-18 12:34:36] 2025-04-18 16:34:22,055 | INFO     | [job] control thread has finished
[2025-04-18 12:34:36] 2025-04-18 16:34:22,818 | INFO     | [data] copytool_out thread has finished
[2025-04-18 12:34:36] 2025-04-18 16:34:25,189 | INFO     | [data] queue_monitor thread has finished
[2025-04-18 12:34:36] 2025-04-18 16:34:29,706 | INFO     | job.realtimelogging is not enabled
[2025-04-18 12:34:36] 2025-04-18 16:34:30,712 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-18 12:34:36] 2025-04-18 16:34:31,060 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139660613908288)>', '<ExcThread(monitor, started 139659585779456)>']
[2025-04-18 12:34:36] 2025-04-18 16:34:31,892 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-18 12:34:36] 2025-04-18 16:34:31,892 | INFO     | [monitor] control thread has ended
[2025-04-18 12:34:36] 2025-04-18 16:34:36,086 | INFO     | all workflow threads have been joined
[2025-04-18 12:34:36] 2025-04-18 16:34:36,086 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-18 12:34:36] 2025-04-18 16:34:36,102 | INFO     | traces error code: 0
[2025-04-18 12:34:36] 2025-04-18 16:34:36,102 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-18 12:34:36] 2025-04-18 16:34:36,187 [wrapper] ==== pilot stdout END ====
[2025-04-18 12:34:36] 2025-04-18 16:34:36,191 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-18 12:34:36] 2025-04-18 16:34:36,194 [wrapper] pilotpid: 31159
[2025-04-18 12:34:36] 2025-04-18 16:34:36,198 [wrapper] Pilot exit status: 0
[2025-04-18 12:34:36] 2025-04-18 16:34:36,213 [wrapper] pandaids: 6606430836
[2025-04-18 12:34:36] 2025-04-18 16:34:36,249 [wrapper] cleanup supervisor_pilot   980 31160
[2025-04-18 12:34:36] 2025-04-18 16:34:36,253 [wrapper] Test setup, not cleaning
[2025-04-18 12:34:36] 2025-04-18 16:34:36,257 [wrapper] apfmon messages muted
[2025-04-18 12:34:36] 2025-04-18 16:34:36,261 [wrapper] ==== wrapper stdout END ====
[2025-04-18 12:34:36] 2025-04-18 16:34:36,265 [wrapper] ==== wrapper stderr END ====
[2025-04-18 12:34:36]  *** Error codes and diagnostics ***
[2025-04-18 12:34:36]     "exeErrorCode": 0,
[2025-04-18 12:34:36]     "exeErrorDiag": "",
[2025-04-18 12:34:36]     "pilotErrorCode": 0,
[2025-04-18 12:34:36]     "pilotErrorDiag": "",
[2025-04-18 12:34:36]  *** Listing of results directory ***
[2025-04-18 12:34:36] total 414824
[2025-04-18 12:34:36] -rw-r--r-- 1 boincer umatlas    495897 Apr 18 07:32 pilot3.tar.gz
[2025-04-18 12:34:36] -rwx------ 1 boincer umatlas     37140 Apr 18 07:35 runpilot2-wrapper.sh
[2025-04-18 12:34:36] -rw-r--r-- 1 boincer umatlas      5111 Apr 18 07:35 queuedata.json
[2025-04-18 12:34:36] -rw-r--r-- 1 boincer umatlas       100 Apr 18 11:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-18 12:34:36] -rwxr-xr-x 1 boincer umatlas      7986 Apr 18 11:08 run_atlas
[2025-04-18 12:34:36] -rw-r--r-- 1 boincer umatlas       105 Apr 18 11:08 job.xml
[2025-04-18 12:34:36] -rw-r--r-- 2 boincer umatlas 222026611 Apr 18 11:08 EVNT.44075481._002671.pool.root.1
[2025-04-18 12:34:36] -rw-r--r-- 2 boincer umatlas     17569 Apr 18 11:08 start_atlas.sh
[2025-04-18 12:34:36] drwxrwx--x 2 boincer umatlas      4096 Apr 18 11:08 shared
[2025-04-18 12:34:36] -rw-r--r-- 2 boincer umatlas    508889 Apr 18 11:08 input.tar.gz
[2025-04-18 12:34:36] -rw-r--r-- 1 boincer umatlas         0 Apr 18 11:08 boinc_lockfile
[2025-04-18 12:34:36] -rw-r--r-- 1 boincer umatlas      2578 Apr 18 11:09 pandaJob.out
[2025-04-18 12:34:36] -rw------- 1 boincer umatlas       424 Apr 18 11:09 setup.sh.local
[2025-04-18 12:34:36] -rw------- 1 boincer umatlas    990604 Apr 18 11:09 agis_schedconf.cvmfs.json
[2025-04-18 12:34:36] -rw------- 1 boincer umatlas   1618536 Apr 18 11:09 agis_ddmendpoints.agis.ALL.json
[2025-04-18 12:34:36] drwx------ 4 boincer umatlas      4096 Apr 18 11:09 pilot3
[2025-04-18 12:34:36] -rw-r--r-- 1 boincer umatlas      5868 Apr 18 12:28 init_data.xml
[2025-04-18 12:34:36] -rw------- 1 boincer umatlas 197191995 Apr 18 12:33 HITS.44075483._068764.pool.root.1
[2025-04-18 12:34:36] -rw-r--r-- 1 boincer umatlas       529 Apr 18 12:33 boinc_task_state.xml
[2025-04-18 12:34:36] -rw------- 1 boincer umatlas      1050 Apr 18 12:34 memory_monitor_summary.json
[2025-04-18 12:34:36] -rw------- 1 boincer umatlas    371433 Apr 18 12:34 log.44075483._068764.job.log.tgz.1
[2025-04-18 12:34:36] -rw------- 1 boincer umatlas        95 Apr 18 12:34 pilot_heartbeat.json
[2025-04-18 12:34:36] -rw------- 1 boincer umatlas      7756 Apr 18 12:34 heartbeat.json
[2025-04-18 12:34:36] -rw-r--r-- 1 boincer umatlas        27 Apr 18 12:34 wrapper_checkpoint.txt
[2025-04-18 12:34:36] -rw-r--r-- 1 boincer umatlas      8192 Apr 18 12:34 boinc_mmap_file
[2025-04-18 12:34:36] -rw------- 1 boincer umatlas      4611 Apr 18 12:34 pilotlog.txt
[2025-04-18 12:34:36] -rw------- 1 boincer umatlas    483266 Apr 18 12:34 log.44075483._068764.job.log.1
[2025-04-18 12:34:36] -rw------- 1 boincer umatlas       357 Apr 18 12:34 output.list
[2025-04-18 12:34:36] -rw-r--r-- 1 boincer umatlas       620 Apr 18 12:34 runtime_log
[2025-04-18 12:34:36] -rw------- 1 boincer umatlas    870400 Apr 18 12:34 result.tar.gz
[2025-04-18 12:34:36] -rw-r--r-- 1 boincer umatlas     11015 Apr 18 12:34 runtime_log.err
[2025-04-18 12:34:36] -rw------- 1 boincer umatlas       658 Apr 18 12:34 71OODmJBzP7n9Rq4apOajLDm4fhM0noT9bVoFjIUDm174KDmng4u1m.diag
[2025-04-18 12:34:36] -rw-r--r-- 1 boincer umatlas     21779 Apr 18 12:34 stderr.txt
[2025-04-18 12:34:36] HITS file was successfully produced:
[2025-04-18 12:34:36] -rw------- 1 boincer umatlas 197191995 Apr 18 12:33 shared/HITS.pool.root.1
[2025-04-18 12:34:36]  *** Contents of shared directory: ***
[2025-04-18 12:34:36] total 410768
[2025-04-18 12:34:36] -rw-r--r-- 2 boincer umatlas 222026611 Apr 18 11:08 ATLAS.root_0
[2025-04-18 12:34:36] -rw-r--r-- 2 boincer umatlas     17569 Apr 18 11:08 start_atlas.sh
[2025-04-18 12:34:36] -rw-r--r-- 2 boincer umatlas    508889 Apr 18 11:08 input.tar.gz
[2025-04-18 12:34:36] -rw------- 1 boincer umatlas 197191995 Apr 18 12:33 HITS.pool.root.1
[2025-04-18 12:34:36] -rw------- 1 boincer umatlas    870400 Apr 18 12:34 result.tar.gz
12:34:38 (27493): run_atlas exited; CPU time 47016.208043
12:34:38 (27493): called boinc_finish(0)

</stderr_txt>
]]>

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