Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
03:39:59 (1082825): wrapper (7.7.26015): starting
03:39:59 (1082825): wrapper: running run_atlas (--nthreads 3)
[2025-04-19 03:39:59] Arguments: --nthreads 3
[2025-04-19 03:39:59] Threads: 3
[2025-04-19 03:39:59] Checking for CVMFS
[2025-04-19 03:39:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-19 03:39:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-19 03:39:59] Running cvmfs_config stat atlas.cern.ch
[2025-04-19 03:39:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-19 03:39:59] 2.9.2.0 2880 3819 80780 145021 3 55 24954793 36864000 0 130560 0 2812300 99.990 936249 9596 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-04-19 03:39:59] CVMFS is ok
[2025-04-19 03:39:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-19 03:39:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-19 03:39:59] Further information can be found at the LHC@home message board.
[2025-04-19 03:39:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-19 03:39:59] Checking for apptainer binary...
[2025-04-19 03:39:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-19 03:39:59] Running /usr/bin/apptainer --version
[2025-04-19 03:39:59] apptainer version 1.3.6-6.1
[2025-04-19 03:39:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-19 03:39:59] magicA252
[2025-04-19 03:39:59] apptainer works
[2025-04-19 03:39:59] Set ATHENA_PROC_NUMBER=3
[2025-04-19 03:39:59] Set ATHENA_CORE_NUMBER=3
[2025-04-19 03:39:59] Starting ATLAS job with PandaID=6606428629
[2025-04-19 03:39:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-19 05:06:24]  *** The last 200 lines of the pilot log: ***
[2025-04-19 05:06:24]  filesize=244594
[2025-04-19 05:06:24]  filetype=log
[2025-04-19 05:06:24]  guid=dd816e4d-a184-46da-bc03-5cc1f0ceeb2b
[2025-04-19 05:06:24]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-04-19 05:06:24]  is_altstaged=None
[2025-04-19 05:06:24]  is_tar=False
[2025-04-19 05:06:24]  lfn=log.44075483._068624.job.log.tgz.1
[2025-04-19 05:06:24]  mtime=0
[2025-04-19 05:06:24]  protocol_id=None
[2025-04-19 05:06:24]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-19 05:06:24]  replicas=None
[2025-04-19 05:06:24]  scope=mc23_13p6TeV
[2025-04-19 05:06:24]  status=None
[2025-04-19 05:06:24]  status_code=0
[2025-04-19 05:06:24]  storage_token=
[2025-04-19 05:06:24]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6606428629/log.44075483._068624.job.log.tgz.1
[2025-04-19 05:06:24]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/01/90/log.44075483._068624.job.log.tgz.1
[2025-04-19 05:06:24]  workdir=None
[2025-04-19 05:06:24] ]
[2025-04-19 05:06:24] 2025-04-19 03:05:59,533 | INFO     | transferring file log.44075483._068624.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6606428629/log.44075483._068624.job.log.tgz.1 to /local/data/boinc/
[2025-04-19 05:06:24] 2025-04-19 03:05:59,533 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6606428629/log.44075483._068624.job.log.tgz.1 /local/data/boinc/slots/0/log.44075483._0686
[2025-04-19 05:06:24] 2025-04-19 03:05:59,547 | INFO     | adding to output.list: log.44075483._068624.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/01/90/log.44075483._068624.job.log.tg
[2025-04-19 05:06:24] 2025-04-19 03:05:59,547 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-19 05:06:24] 2025-04-19 03:05:59,547 | INFO     | summary of transferred files:
[2025-04-19 05:06:24] 2025-04-19 03:05:59,547 | INFO     |  -- lfn=log.44075483._068624.job.log.tgz.1, status_code=0, status=transferred
[2025-04-19 05:06:24] 2025-04-19 03:05:59,547 | INFO     | stage-out finished correctly
[2025-04-19 05:06:24] 2025-04-19 03:05:59,578 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-19 05:06:24] 2025-04-19 03:06:01,860 | INFO     | monitor loop #398: job 0:6606428629 is in state 'finished'
[2025-04-19 05:06:24] 2025-04-19 03:06:01,861 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 05:06:24] 2025-04-19 03:06:02,026 | INFO     | job 6606428629 has state=finished
[2025-04-19 05:06:24] 2025-04-19 03:06:02,026 | INFO     | preparing for final server update for job 6606428629 in state='finished'
[2025-04-19 05:06:24] 2025-04-19 03:06:02,026 | INFO     | this job has now completed (state=finished)
[2025-04-19 05:06:24] 2025-04-19 03:06:02,026 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-19 05:06:24] 2025-04-19 03:06:02,026 | INFO     | log transfer has been attempted: DONE
[2025-04-19 05:06:24] 2025-04-19 03:06:02,026 | INFO     | job 6606428629 has finished - writing final server update
[2025-04-19 05:06:24] 2025-04-19 03:06:02,027 | INFO     | total number of processed events: 400 (read)
[2025-04-19 05:06:24] 2025-04-19 03:06:02,028 | INFO     | executing command: lscpu
[2025-04-19 05:06:24] 2025-04-19 03:06:02,044 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-19 05:06:24] 2025-04-19 03:06:04,363 | INFO     | monitor loop #399: job 0:6606428629 is in state 'finished'
[2025-04-19 05:06:24] 2025-04-19 03:06:04,363 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 05:06:24] 2025-04-19 03:06:05,585 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-19 05:06:24] 2025-04-19 03:06:05,585 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6606428629/memory_monitor_summary.json (trf name=prmon)
[2025-04-19 05:06:24] 2025-04-19 03:06:05,585 | INFO     | extracted standard info from prmon json
[2025-04-19 05:06:24] 2025-04-19 03:06:05,585 | INFO     | extracted standard memory fields from prmon json
[2025-04-19 05:06:24] 2025-04-19 03:06:05,586 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-19 05:06:24] 2025-04-19 03:06:05,586 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-19 05:06:24] 2025-04-19 03:06:05,586 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-19 05:06:24] 2025-04-19 03:06:05,586 | INFO     | fitting pss+swap vs Time
[2025-04-19 05:06:24] 2025-04-19 03:06:05,587 | INFO     | sum of square deviations: 147126479.5
[2025-04-19 05:06:24] 2025-04-19 03:06:05,587 | INFO     | sum of deviations: 2191756413.0
[2025-04-19 05:06:24] 2025-04-19 03:06:05,587 | INFO     | mean x: 1745029477.5
[2025-04-19 05:06:24] 2025-04-19 03:06:05,587 | INFO     | mean y: 2364436.1025641025
[2025-04-19 05:06:24] 2025-04-19 03:06:05,587 | INFO     | -- intersect: -25993496820.02614
[2025-04-19 05:06:24] 2025-04-19 03:06:05,587 | INFO     | intersect: -25993496820.02614
[2025-04-19 05:06:24] 2025-04-19 03:06:05,587 | INFO     | chi2: 1.2242904969375517
[2025-04-19 05:06:24] 2025-04-19 03:06:05,587 | INFO     | -- intersect: -25993496820.02614
[2025-04-19 05:06:24] 2025-04-19 03:06:05,587 | INFO     | current memory leak: 14.90 B/s (using 78 data points, chi2=1.22)
[2025-04-19 05:06:24] 2025-04-19 03:06:05,587 | INFO     | ..............................
[2025-04-19 05:06:24] 2025-04-19 03:06:05,587 | INFO     | . Timing measurements:
[2025-04-19 05:06:24] 2025-04-19 03:06:05,587 | INFO     | . get job = 0 s
[2025-04-19 05:06:24] 2025-04-19 03:06:05,587 | INFO     | . initial setup = 1 s
[2025-04-19 05:06:24] 2025-04-19 03:06:05,587 | INFO     | . payload setup = 3 s
[2025-04-19 05:06:24] 2025-04-19 03:06:05,587 | INFO     | . stage-in = 0 s
[2025-04-19 05:06:24] 2025-04-19 03:06:05,587 | INFO     | . payload execution = 5133 s
[2025-04-19 05:06:24] 2025-04-19 03:06:05,587 | INFO     | . stage-out = 0 s
[2025-04-19 05:06:24] 2025-04-19 03:06:05,587 | INFO     | . log creation = 0 s
[2025-04-19 05:06:24] 2025-04-19 03:06:05,587 | INFO     | ..............................
[2025-04-19 05:06:24] 2025-04-19 03:06:05,619 | INFO     | 
[2025-04-19 05:06:24] 2025-04-19 03:06:05,619 | INFO     | job summary report
[2025-04-19 05:06:24] 2025-04-19 03:06:05,619 | INFO     | --------------------------------------------------
[2025-04-19 05:06:24] 2025-04-19 03:06:05,619 | INFO     | PanDA job id: 6606428629
[2025-04-19 05:06:24] 2025-04-19 03:06:05,619 | INFO     | task id: 44075483
[2025-04-19 05:06:24] 2025-04-19 03:06:05,619 | INFO     | errors: (none)
[2025-04-19 05:06:24] 2025-04-19 03:06:05,619 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-19 05:06:24] 2025-04-19 03:06:05,619 | INFO     | pilot state: finished 
[2025-04-19 05:06:24] 2025-04-19 03:06:05,619 | INFO     | transexitcode: 0
[2025-04-19 05:06:24] 2025-04-19 03:06:05,619 | INFO     | exeerrorcode: 0
[2025-04-19 05:06:24] 2025-04-19 03:06:05,619 | INFO     | exeerrordiag: 
[2025-04-19 05:06:24] 2025-04-19 03:06:05,619 | INFO     | exitcode: 0
[2025-04-19 05:06:24] 2025-04-19 03:06:05,619 | INFO     | exitmsg: OK
[2025-04-19 05:06:24] 2025-04-19 03:06:05,619 | INFO     | cpuconsumptiontime: 13526 s
[2025-04-19 05:06:24] 2025-04-19 03:06:05,619 | INFO     | nevents: 400
[2025-04-19 05:06:24] 2025-04-19 03:06:05,619 | INFO     | neventsw: 0
[2025-04-19 05:06:24] 2025-04-19 03:06:05,619 | INFO     | pid: 1092904
[2025-04-19 05:06:24] 2025-04-19 03:06:05,619 | INFO     | pgrp: 1092904
[2025-04-19 05:06:24] 2025-04-19 03:06:05,619 | INFO     | corecount: 3
[2025-04-19 05:06:24] 2025-04-19 03:06:05,619 | INFO     | event service: False
[2025-04-19 05:06:24] 2025-04-19 03:06:05,619 | INFO     | sizes: {0: 2426605, 1: 2426804, 3: 2427010, 11: 2427038, 5140: 2453502, 5141: 2462633, 5147: 2462747}
[2025-04-19 05:06:24] 2025-04-19 03:06:05,619 | INFO     | --------------------------------------------------
[2025-04-19 05:06:24] 2025-04-19 03:06:05,619 | INFO     | 
[2025-04-19 05:06:24] 2025-04-19 03:06:05,620 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-04-19 05:06:24] 2025-04-19 03:06:05,632 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-19 05:06:24] 2025-04-19 03:06:05,632 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-19 05:06:24] 2025-04-19 03:06:05,632 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-19 05:06:24] 2025-04-19 03:06:05,632 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-19 05:06:24] 2025-04-19 03:06:05,632 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-19 05:06:24] 2025-04-19 03:06:05,632 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-19 05:06:24] 2025-04-19 03:06:05,632 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-19 05:06:24] 2025-04-19 03:06:05,632 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-19 05:06:24] 2025-04-19 03:06:05,632 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-19 05:06:24] 2025-04-19 03:06:05,632 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-19 05:06:24] 2025-04-19 03:06:05,632 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-19 05:06:24] 2025-04-19 03:06:05,632 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-19 05:06:24] 2025-04-19 03:06:05,632 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-19 05:06:24] 2025-04-19 03:06:05,632 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-19 05:06:24] 2025-04-19 03:06:05,632 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-19 05:06:24] 2025-04-19 03:06:05,632 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-19 05:06:24] 2025-04-19 03:06:05,632 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-19 05:06:24] 2025-04-19 03:06:05,632 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-19 05:06:24] 2025-04-19 03:06:05,633 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-19 05:06:24] 2025-04-19 03:06:05,633 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-19 05:06:24] 2025-04-19 03:06:05,633 | INFO     | job 6606428629 has completed (purged errors)
[2025-04-19 05:06:24] 2025-04-19 03:06:05,633 | INFO     | overall cleanup function is called
[2025-04-19 05:06:24] 2025-04-19 03:06:06,639 | INFO     | --- collectZombieJob: --- 10, [1092904]
[2025-04-19 05:06:24] 2025-04-19 03:06:06,639 | INFO     | zombie collector waiting for pid 1092904
[2025-04-19 05:06:24] 2025-04-19 03:06:06,639 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-19 05:06:24] 2025-04-19 03:06:06,640 | INFO     | collected zombie processes
[2025-04-19 05:06:24] 2025-04-19 03:06:06,640 | INFO     | will attempt to kill all subprocesses of pid=1092904
[2025-04-19 05:06:24] 2025-04-19 03:06:06,680 | INFO     | process IDs to be killed: [1092904] (in reverse order)
[2025-04-19 05:06:24] 2025-04-19 03:06:06,706 | WARNING  | found no corresponding commands to process id(s)
[2025-04-19 05:06:24] 2025-04-19 03:06:06,706 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-19 05:06:24] 2025-04-19 03:06:06,707 | INFO     | did not find any defunct processes belonging to 1092904
[2025-04-19 05:06:24] 2025-04-19 03:06:06,708 | INFO     | did not find any defunct processes belonging to 1092904
[2025-04-19 05:06:24] 2025-04-19 03:06:06,708 | INFO     | ready for new job
[2025-04-19 05:06:24] 2025-04-19 03:06:06,708 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-19 05:06:24] 2025-04-19 03:06:06,709 | INFO     | **************************************
[2025-04-19 05:06:24] 2025-04-19 03:06:06,709 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-19 05:06:24] 2025-04-19 03:06:06,709 | INFO     | **************************************
[2025-04-19 05:06:24] 2025-04-19 03:06:06,709 | INFO     | 
[2025-04-19 05:06:24] 2025-04-19 03:06:06,709 | INFO     | architecture information:
[2025-04-19 05:06:24] 2025-04-19 03:06:06,709 | INFO     | executing command: cat /etc/os-release
[2025-04-19 05:06:24] 2025-04-19 03:06:06,718 | INFO     | cat /etc/os-release:
[2025-04-19 05:06:24] NAME="CentOS Linux"
[2025-04-19 05:06:24] VERSION="7 (Core)"
[2025-04-19 05:06:24] ID="centos"
[2025-04-19 05:06:24] ID_LIKE="rhel fedora"
[2025-04-19 05:06:24] VERSION_ID="7"
[2025-04-19 05:06:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-19 05:06:24] ANSI_COLOR="0;31"
[2025-04-19 05:06:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-19 05:06:24] HOME_URL="https://www.centos.org/"
[2025-04-19 05:06:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-19 05:06:24] 
[2025-04-19 05:06:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-19 05:06:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-19 05:06:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-19 05:06:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-19 05:06:24] 
[2025-04-19 05:06:24] 2025-04-19 03:06:06,718 | INFO     | **************************************
[2025-04-19 05:06:24] 2025-04-19 03:06:07,222 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-04-19 05:06:24] 2025-04-19 03:06:07,234 | INFO     | sufficient remaining disk space (375392305152 B)
[2025-04-19 05:06:24] 2025-04-19 03:06:07,234 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-19 05:06:24] 2025-04-19 03:06:07,234 | INFO     | current server update state: UPDATING_FINAL
[2025-04-19 05:06:24] 2025-04-19 03:06:07,235 | INFO     | update_server=False
[2025-04-19 05:06:24] 2025-04-19 03:06:07,235 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-19 05:06:24] 2025-04-19 03:06:07,235 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-19 05:06:24] 2025-04-19 03:06:07,332 | INFO     | all payload control threads have been joined
[2025-04-19 05:06:24] 2025-04-19 03:06:07,588 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-19 05:06:24] 2025-04-19 03:06:07,827 | INFO     | all data control threads have been joined
[2025-04-19 05:06:24] 2025-04-19 03:06:07,872 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-19 05:06:24] 2025-04-19 03:06:07,873 | INFO     | aborting loop
[2025-04-19 05:06:24] 2025-04-19 03:06:08,002 | INFO     | found 0 job(s) in 20 queues
[2025-04-19 05:06:24] 2025-04-19 03:06:08,002 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-19 05:06:24] 2025-04-19 03:06:08,002 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-19 05:06:24] 2025-04-19 03:06:08,235 | INFO     | [job] retrieve thread has finished
[2025-04-19 05:06:24] 2025-04-19 03:06:08,240 | INFO     | [job] queue monitor thread has finished
[2025-04-19 05:06:24] 2025-04-19 03:06:08,338 | INFO     | [payload] control thread has finished
[2025-04-19 05:06:24] 2025-04-19 03:06:08,362 | INFO     | [payload] execute_payloads thread has finished
[2025-04-19 05:06:24] 2025-04-19 03:06:08,833 | INFO     | [data] control thread has finished
[2025-04-19 05:06:24] 2025-04-19 03:06:08,878 | INFO     | [job] job monitor thread has finished
[2025-04-19 05:06:24] 2025-04-19 03:06:08,938 | INFO     | all job control threads have been joined
[2025-04-19 05:06:24] 2025-04-19 03:06:08,996 | INFO     | [data] copytool_in thread has finished
[2025-04-19 05:06:24] 2025-04-19 03:06:08,996 | INFO     | [payload] validate_post thread has finished
[2025-04-19 05:06:24] 2025-04-19 03:06:09,228 | INFO     | [job] validate thread has finished
[2025-04-19 05:06:24] 2025-04-19 03:06:09,267 | INFO     | [job] create_data_payload thread has finished
[2025-04-19 05:06:24] 2025-04-19 03:06:09,292 | INFO     | [payload] validate_pre thread has finished
[2025-04-19 05:06:24] 2025-04-19 03:06:09,463 | INFO     | [payload] failed_post thread has finished
[2025-04-19 05:06:24] 2025-04-19 03:06:09,594 | INFO     | [data] copytool_out thread has finished
[2025-04-19 05:06:24] 2025-04-19 03:06:09,944 | INFO     | [job] control thread has finished
[2025-04-19 05:06:24] 2025-04-19 03:06:10,123 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-19 05:06:24] 2025-04-19 03:06:14,130 | INFO     | [data] queue_monitor thread has finished
[2025-04-19 05:06:24] 2025-04-19 03:06:18,276 | INFO     | job.realtimelogging is not enabled
[2025-04-19 05:06:24] 2025-04-19 03:06:19,278 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-19 05:06:24] 2025-04-19 03:06:19,550 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140228921702208)>', '<ExcThread(monitor, started 140228568266496)>']
[2025-04-19 05:06:24] 2025-04-19 03:06:20,039 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-19 05:06:24] 2025-04-19 03:06:20,039 | INFO     | [monitor] control thread has ended
[2025-04-19 05:06:24] 2025-04-19 03:06:24,574 | INFO     | all workflow threads have been joined
[2025-04-19 05:06:24] 2025-04-19 03:06:24,574 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-19 05:06:24] 2025-04-19 03:06:24,574 | INFO     | traces error code: 0
[2025-04-19 05:06:24] 2025-04-19 03:06:24,574 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-19 05:06:24] 2025-04-19 03:06:24,623 [wrapper] ==== pilot stdout END ====
[2025-04-19 05:06:24] 2025-04-19 03:06:24,626 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-19 05:06:24] 2025-04-19 03:06:24,628 [wrapper] pilotpid: 1086472
[2025-04-19 05:06:24] 2025-04-19 03:06:24,631 [wrapper] Pilot exit status: 0
[2025-04-19 05:06:24] 2025-04-19 03:06:24,638 [wrapper] pandaids: 6606428629
[2025-04-19 05:06:24] 2025-04-19 03:06:24,655 [wrapper] cleanup supervisor_pilot 1104759 1086473
[2025-04-19 05:06:24] 2025-04-19 03:06:24,657 [wrapper] Test setup, not cleaning
[2025-04-19 05:06:24] 2025-04-19 03:06:24,660 [wrapper] apfmon messages muted
[2025-04-19 05:06:24] 2025-04-19 03:06:24,663 [wrapper] ==== wrapper stdout END ====
[2025-04-19 05:06:24] 2025-04-19 03:06:24,665 [wrapper] ==== wrapper stderr END ====
[2025-04-19 05:06:24]  *** Error codes and diagnostics ***
[2025-04-19 05:06:24]     "exeErrorCode": 0,
[2025-04-19 05:06:24]     "exeErrorDiag": "",
[2025-04-19 05:06:24]     "pilotErrorCode": 0,
[2025-04-19 05:06:24]     "pilotErrorDiag": "",
[2025-04-19 05:06:24]  *** Listing of results directory ***
[2025-04-19 05:06:24] total 410196
[2025-04-19 05:06:24] -rw-r--r-- 1 boinc boinc    495897 Apr 18 12:44 pilot3.tar.gz
[2025-04-19 05:06:24] -rwx------ 1 boinc boinc     37140 Apr 18 13:18 runpilot2-wrapper.sh
[2025-04-19 05:06:24] -rw-r--r-- 1 boinc boinc      5111 Apr 18 13:18 queuedata.json
[2025-04-19 05:06:24] -rw-r--r-- 1 boinc boinc       100 Apr 19 03:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-19 05:06:24] -rwxr-xr-x 1 boinc boinc      7986 Apr 19 03:39 run_atlas
[2025-04-19 05:06:24] -rw-r--r-- 1 boinc boinc       105 Apr 19 03:39 job.xml
[2025-04-19 05:06:24] -rw-r--r-- 2 boinc boinc 222577715 Apr 19 03:39 EVNT.44075481._001509.pool.root.1
[2025-04-19 05:06:24] -rw-r--r-- 1 boinc boinc      6931 Apr 19 03:39 init_data.xml
[2025-04-19 05:06:24] drwxrwx--x 2 boinc boinc      4096 Apr 19 03:39 shared
[2025-04-19 05:06:24] -rw-r--r-- 2 boinc boinc    508896 Apr 19 03:39 input.tar.gz
[2025-04-19 05:06:24] -rw-r--r-- 2 boinc boinc     17569 Apr 19 03:39 start_atlas.sh
[2025-04-19 05:06:24] -rw-r--r-- 1 boinc boinc         0 Apr 19 03:39 boinc_lockfile
[2025-04-19 05:06:24] -rw-r--r-- 1 boinc boinc      2578 Apr 19 03:39 pandaJob.out
[2025-04-19 05:06:24] -rw------- 1 boinc boinc       424 Apr 19 03:39 setup.sh.local
[2025-04-19 05:06:24] -rw------- 1 boinc boinc    991292 Apr 19 03:40 agis_schedconf.cvmfs.json
[2025-04-19 05:06:24] -rw------- 1 boinc boinc   1618536 Apr 19 03:40 agis_ddmendpoints.agis.ALL.json
[2025-04-19 05:06:24] drwx------ 4 boinc boinc      4096 Apr 19 03:40 pilot3
[2025-04-19 05:06:24] -rw------- 1 boinc boinc        95 Apr 19 05:05 pilot_heartbeat.json
[2025-04-19 05:06:24] -rw------- 1 boinc boinc 192097383 Apr 19 05:05 HITS.44075483._068624.pool.root.1
[2025-04-19 05:06:24] -rw-r--r-- 1 boinc boinc       529 Apr 19 05:05 boinc_task_state.xml
[2025-04-19 05:06:24] -rw------- 1 boinc boinc      1020 Apr 19 05:05 memory_monitor_summary.json
[2025-04-19 05:06:24] -rw------- 1 boinc boinc    244594 Apr 19 05:05 log.44075483._068624.job.log.tgz.1
[2025-04-19 05:06:24] -rw------- 1 boinc boinc      7661 Apr 19 05:06 heartbeat.json
[2025-04-19 05:06:24] -rw-r--r-- 1 boinc boinc        27 Apr 19 05:06 wrapper_checkpoint.txt
[2025-04-19 05:06:24] -rw-r--r-- 1 boinc boinc      8192 Apr 19 05:06 boinc_mmap_file
[2025-04-19 05:06:24] -rw------- 1 boinc boinc      4429 Apr 19 05:06 pilotlog.txt
[2025-04-19 05:06:24] -rw------- 1 boinc boinc    500192 Apr 19 05:06 log.44075483._068624.job.log.1
[2025-04-19 05:06:24] -rw------- 1 boinc boinc       357 Apr 19 05:06 output.list
[2025-04-19 05:06:24] -rw-r--r-- 1 boinc boinc       620 Apr 19 05:06 runtime_log
[2025-04-19 05:06:24] -rw------- 1 boinc boinc    768000 Apr 19 05:06 result.tar.gz
[2025-04-19 05:06:24] -rw-r--r-- 1 boinc boinc     11114 Apr 19 05:06 runtime_log.err
[2025-04-19 05:06:24] -rw------- 1 boinc boinc       661 Apr 19 05:06 8YQNDmLvyP7n9Rq4apOajLDm4fhM0noT9bVoFjIUDma74KDmd4oUbn.diag
[2025-04-19 05:06:24] -rw-r--r-- 1 boinc boinc     21076 Apr 19 05:06 stderr.txt
[2025-04-19 05:06:24] HITS file was successfully produced:
[2025-04-19 05:06:24] -rw------- 1 boinc boinc 192097383 Apr 19 05:05 shared/HITS.pool.root.1
[2025-04-19 05:06:24]  *** Contents of shared directory: ***
[2025-04-19 05:06:24] total 406240
[2025-04-19 05:06:24] -rw-r--r-- 2 boinc boinc 222577715 Apr 19 03:39 ATLAS.root_0
[2025-04-19 05:06:24] -rw-r--r-- 2 boinc boinc    508896 Apr 19 03:39 input.tar.gz
[2025-04-19 05:06:24] -rw-r--r-- 2 boinc boinc     17569 Apr 19 03:39 start_atlas.sh
[2025-04-19 05:06:24] -rw------- 1 boinc boinc 192097383 Apr 19 05:05 HITS.pool.root.1
[2025-04-19 05:06:24] -rw------- 1 boinc boinc    768000 Apr 19 05:06 result.tar.gz
05:06:26 (1082825): run_atlas exited; CPU time 13539.986914
05:06:26 (1082825): called boinc_finish(0)

</stderr_txt>
]]>

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