Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:02:26 (1604152): wrapper (7.7.26015): starting
12:02:26 (1604152): wrapper: running run_atlas (--nthreads 4)
[2025-04-19 12:02:26] Arguments: --nthreads 4
[2025-04-19 12:02:26] Threads: 4
[2025-04-19 12:02:26] Checking for CVMFS
[2025-04-19 12:02:26] No cvmfs_config command found, will try listing directly
[2025-04-19 12:02:26] CVMFS is ok
[2025-04-19 12:02:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-19 12:02:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-19 12:02:26] Further information can be found at the LHC@home message board.
[2025-04-19 12:02:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-19 12:02:26] Checking for apptainer binary...
[2025-04-19 12:02:26] which: no apptainer in ((null))
[2025-04-19 12:02:26] apptainer is not installed, using version from CVMFS
[2025-04-19 12:02:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-19 12:02:26] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut07.grid.cesnet.cz
[2025-04-19 12:02:26] apptainer works
[2025-04-19 12:02:26] Set ATHENA_PROC_NUMBER=4
[2025-04-19 12:02:26] Set ATHENA_CORE_NUMBER=4
[2025-04-19 12:02:26] Starting ATLAS job with PandaID=6606397427
[2025-04-19 12:02:26] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-19 15:17:25]  *** The last 200 lines of the pilot log: ***
[2025-04-19 15:17:25] 2025-04-19 13:17:04,534 | INFO     | intersect: -37483698546.86009
[2025-04-19 15:17:25] 2025-04-19 13:17:04,534 | INFO     | chi2: 1.6594549768731
[2025-04-19 15:17:25] 2025-04-19 13:17:04,535 | INFO     | current chi2=1.6594549768731 (change=60.80647770738541 %)
[2025-04-19 15:17:25] 2025-04-19 13:17:04,535 | INFO     | sum of square deviations: 1838657730.0
[2025-04-19 15:17:25] 2025-04-19 13:17:04,536 | INFO     | sum of deviations: 6988113090.999996
[2025-04-19 15:17:25] 2025-04-19 13:17:04,536 | INFO     | mean x: 1745063093.0
[2025-04-19 15:17:25] 2025-04-19 13:17:04,537 | INFO     | mean y: 2325263.0110497237
[2025-04-19 15:17:25] 2025-04-19 13:17:04,537 | INFO     | -- intersect: -6630066424.600241
[2025-04-19 15:17:25] 2025-04-19 13:17:04,537 | INFO     | intersect: -6630066424.600241
[2025-04-19 15:17:25] 2025-04-19 13:17:04,537 | INFO     | chi2: 0.10485413573459834
[2025-04-19 15:17:25] 2025-04-19 13:17:04,537 | INFO     | current chi2=0.10485413573459834 (change=93.68141123465885 %)
[2025-04-19 15:17:25] 2025-04-19 13:17:04,537 | INFO     | sum of square deviations: 1690450300.0
[2025-04-19 15:17:25] 2025-04-19 13:17:04,538 | INFO     | sum of deviations: 802582551.0000001
[2025-04-19 15:17:25] 2025-04-19 13:17:04,539 | INFO     | mean x: 1745063245.5
[2025-04-19 15:17:25] 2025-04-19 13:17:04,539 | INFO     | mean y: 2331528.8295454546
[2025-04-19 15:17:25] 2025-04-19 13:17:04,539 | INFO     | -- intersect: -826179851.3806444
[2025-04-19 15:17:25] 2025-04-19 13:17:04,539 | INFO     | intersect: -826179851.3806444
[2025-04-19 15:17:25] 2025-04-19 13:17:04,539 | INFO     | chi2: 0.013971444268560899
[2025-04-19 15:17:25] 2025-04-19 13:17:04,539 | INFO     | current chi2=0.013971444268560899 (change=86.67535222079869 %)
[2025-04-19 15:17:25] 2025-04-19 13:17:04,540 | INFO     | sum of square deviations: 1550429070.0
[2025-04-19 15:17:25] 2025-04-19 13:17:04,540 | INFO     | sum of deviations: 3436068329.000001
[2025-04-19 15:17:25] 2025-04-19 13:17:04,541 | INFO     | mean x: 1745063398.0
[2025-04-19 15:17:25] 2025-04-19 13:17:04,541 | INFO     | mean y: 2328657.187134503
[2025-04-19 15:17:25] 2025-04-19 13:17:04,541 | INFO     | -- intersect: -3865089201.5124083
[2025-04-19 15:17:25] 2025-04-19 13:17:04,541 | INFO     | intersect: -3865089201.5124083
[2025-04-19 15:17:25] 2025-04-19 13:17:04,541 | INFO     | chi2: 0.0034907692338384225
[2025-04-19 15:17:25] 2025-04-19 13:17:04,541 | INFO     | current chi2=0.0034907692338384225 (change=75.01497220517503 %)
[2025-04-19 15:17:25] 2025-04-19 13:17:04,542 | INFO     | sum of square deviations: 1418361477.5
[2025-04-19 15:17:25] 2025-04-19 13:17:04,542 | INFO     | sum of deviations: 3579023445.500001
[2025-04-19 15:17:25] 2025-04-19 13:17:04,543 | INFO     | mean x: 1745063550.5
[2025-04-19 15:17:25] 2025-04-19 13:17:04,543 | INFO     | mean y: 2328511.078313253
[2025-04-19 15:17:25] 2025-04-19 13:17:04,543 | INFO     | -- intersect: -4401078843.25529
[2025-04-19 15:17:25] 2025-04-19 13:17:04,543 | INFO     | intersect: -4401078843.25529
[2025-04-19 15:17:25] 2025-04-19 13:17:04,543 | INFO     | chi2: 0.0004200113317316578
[2025-04-19 15:17:25] 2025-04-19 13:17:04,543 | INFO     | current chi2=0.0004200113317316578 (change=87.96794335013041 %)
[2025-04-19 15:17:25] 2025-04-19 13:17:04,544 | INFO     | sum of square deviations: 1294014960.0
[2025-04-19 15:17:25] 2025-04-19 13:17:04,544 | INFO     | sum of deviations: 3040486439.9999995
[2025-04-19 15:17:25] 2025-04-19 13:17:04,545 | INFO     | mean x: 1745063703.0
[2025-04-19 15:17:25] 2025-04-19 13:17:04,545 | INFO     | mean y: 2329171.546583851
[2025-04-19 15:17:25] 2025-04-19 13:17:04,545 | INFO     | -- intersect: -4097965407.6657667
[2025-04-19 15:17:25] 2025-04-19 13:17:04,545 | INFO     | intersect: -4097965407.6657667
[2025-04-19 15:17:25] 2025-04-19 13:17:04,545 | INFO     | chi2: 0.00033719017774905746
[2025-04-19 15:17:25] 2025-04-19 13:17:04,545 | INFO     | current chi2=0.00033719017774905746 (change=19.71879035766449 %)
[2025-04-19 15:17:25] 2025-04-19 13:17:04,545 | INFO     | left removable region: 60
[2025-04-19 15:17:25] 2025-04-19 13:17:04,545 | INFO     | sum of square deviations: 605592750.0
[2025-04-19 15:17:25] 2025-04-19 13:17:04,546 | INFO     | sum of deviations: 1012678323.9999996
[2025-04-19 15:17:25] 2025-04-19 13:17:04,546 | INFO     | mean x: 1745064435.0
[2025-04-19 15:17:25] 2025-04-19 13:17:04,546 | INFO     | mean y: 2331790.176
[2025-04-19 15:17:25] 2025-04-19 13:17:04,546 | INFO     | -- intersect: -2915782614.773211
[2025-04-19 15:17:25] 2025-04-19 13:17:04,547 | INFO     | intersect: -2915782614.773211
[2025-04-19 15:17:25] 2025-04-19 13:17:04,547 | INFO     | chi2: 4.896141062221348e-05
[2025-04-19 15:17:25] 2025-04-19 13:17:04,547 | INFO     | -- intersect: -2915782614.773211
[2025-04-19 15:17:25] 2025-04-19 13:17:04,547 | INFO     | current memory leak: 1.67 B/s (using 125 data points, chi2=0.00)
[2025-04-19 15:17:25] 2025-04-19 13:17:04,548 | INFO     | ..............................
[2025-04-19 15:17:25] 2025-04-19 13:17:04,548 | INFO     | . Timing measurements:
[2025-04-19 15:17:25] 2025-04-19 13:17:04,548 | INFO     | . get job = 0 s
[2025-04-19 15:17:25] 2025-04-19 13:17:04,548 | INFO     | . initial setup = 1 s
[2025-04-19 15:17:25] 2025-04-19 13:17:04,548 | INFO     | . payload setup = 8 s
[2025-04-19 15:17:25] 2025-04-19 13:17:04,548 | INFO     | . stage-in = 0 s
[2025-04-19 15:17:25] 2025-04-19 13:17:04,548 | INFO     | . payload execution = 11628 s
[2025-04-19 15:17:25] 2025-04-19 13:17:04,548 | INFO     | . stage-out = 1 s
[2025-04-19 15:17:25] 2025-04-19 13:17:04,548 | INFO     | . log creation = 0 s
[2025-04-19 15:17:25] 2025-04-19 13:17:04,548 | INFO     | ..............................
[2025-04-19 15:17:25] 2025-04-19 13:17:04,654 | INFO     | 
[2025-04-19 15:17:25] 2025-04-19 13:17:04,654 | INFO     | job summary report
[2025-04-19 15:17:25] 2025-04-19 13:17:04,654 | INFO     | --------------------------------------------------
[2025-04-19 15:17:25] 2025-04-19 13:17:04,655 | INFO     | PanDA job id: 6606397427
[2025-04-19 15:17:25] 2025-04-19 13:17:04,655 | INFO     | task id: 44075483
[2025-04-19 15:17:25] 2025-04-19 13:17:04,655 | INFO     | errors: (none)
[2025-04-19 15:17:25] 2025-04-19 13:17:04,655 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-19 15:17:25] 2025-04-19 13:17:04,655 | INFO     | pilot state: finished 
[2025-04-19 15:17:25] 2025-04-19 13:17:04,655 | INFO     | transexitcode: 0
[2025-04-19 15:17:25] 2025-04-19 13:17:04,655 | INFO     | exeerrorcode: 0
[2025-04-19 15:17:25] 2025-04-19 13:17:04,655 | INFO     | exeerrordiag: 
[2025-04-19 15:17:25] 2025-04-19 13:17:04,655 | INFO     | exitcode: 0
[2025-04-19 15:17:25] 2025-04-19 13:17:04,655 | INFO     | exitmsg: OK
[2025-04-19 15:17:25] 2025-04-19 13:17:04,655 | INFO     | cpuconsumptiontime: 42428 s
[2025-04-19 15:17:25] 2025-04-19 13:17:04,655 | INFO     | nevents: 400
[2025-04-19 15:17:25] 2025-04-19 13:17:04,656 | INFO     | neventsw: 0
[2025-04-19 15:17:25] 2025-04-19 13:17:04,656 | INFO     | pid: 1614854
[2025-04-19 15:17:25] 2025-04-19 13:17:04,656 | INFO     | pgrp: 1614854
[2025-04-19 15:17:25] 2025-04-19 13:17:04,656 | INFO     | corecount: 4
[2025-04-19 15:17:25] 2025-04-19 13:17:04,656 | INFO     | event service: False
[2025-04-19 15:17:25] 2025-04-19 13:17:04,656 | INFO     | sizes: {0: 2425996, 1: 2426863, 6: 2427069, 12: 2427097, 11641: 2456345, 11642: 2456344, 11643: 2465491, 11644: 2465547, 11651: 2465717}
[2025-04-19 15:17:25] 2025-04-19 13:17:04,656 | INFO     | --------------------------------------------------
[2025-04-19 15:17:25] 2025-04-19 13:17:04,656 | INFO     | 
[2025-04-19 15:17:25] 2025-04-19 13:17:04,656 | INFO     | executing command: ls -lF /scratch/boinc/var/slot36/slots/0
[2025-04-19 15:17:25] 2025-04-19 13:17:04,677 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-19 15:17:25] 2025-04-19 13:17:04,678 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-19 15:17:25] 2025-04-19 13:17:04,678 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-19 15:17:25] 2025-04-19 13:17:04,678 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-19 15:17:25] 2025-04-19 13:17:04,678 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-19 15:17:25] 2025-04-19 13:17:04,678 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-19 15:17:25] 2025-04-19 13:17:04,678 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-19 15:17:25] 2025-04-19 13:17:04,678 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-19 15:17:25] 2025-04-19 13:17:04,678 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-19 15:17:25] 2025-04-19 13:17:04,678 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-19 15:17:25] 2025-04-19 13:17:04,679 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-19 15:17:25] 2025-04-19 13:17:04,679 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-19 15:17:25] 2025-04-19 13:17:04,679 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-19 15:17:25] 2025-04-19 13:17:04,679 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-19 15:17:25] 2025-04-19 13:17:04,679 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-19 15:17:25] 2025-04-19 13:17:04,679 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-19 15:17:25] 2025-04-19 13:17:04,679 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-19 15:17:25] 2025-04-19 13:17:04,679 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-19 15:17:25] 2025-04-19 13:17:04,679 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-19 15:17:25] 2025-04-19 13:17:04,679 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-19 15:17:25] 2025-04-19 13:17:04,679 | INFO     | job 6606397427 has completed (purged errors)
[2025-04-19 15:17:25] 2025-04-19 13:17:04,680 | INFO     | overall cleanup function is called
[2025-04-19 15:17:25] 2025-04-19 13:17:05,688 | INFO     | --- collectZombieJob: --- 10, [1614854]
[2025-04-19 15:17:25] 2025-04-19 13:17:05,688 | INFO     | zombie collector waiting for pid 1614854
[2025-04-19 15:17:25] 2025-04-19 13:17:05,688 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-19 15:17:25] 2025-04-19 13:17:05,688 | INFO     | collected zombie processes
[2025-04-19 15:17:25] 2025-04-19 13:17:05,688 | INFO     | will attempt to kill all subprocesses of pid=1614854
[2025-04-19 15:17:25] 2025-04-19 13:17:06,043 | INFO     | process IDs to be killed: [1614854] (in reverse order)
[2025-04-19 15:17:25] 2025-04-19 13:17:06,176 | WARNING  | found no corresponding commands to process id(s)
[2025-04-19 15:17:25] 2025-04-19 13:17:06,176 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-19 15:17:25] 2025-04-19 13:17:06,188 | INFO     | did not find any defunct processes belonging to 1614854
[2025-04-19 15:17:25] 2025-04-19 13:17:06,199 | INFO     | did not find any defunct processes belonging to 1614854
[2025-04-19 15:17:25] 2025-04-19 13:17:06,200 | INFO     | ready for new job
[2025-04-19 15:17:25] 2025-04-19 13:17:06,200 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-19 15:17:25] 2025-04-19 13:17:06,202 | INFO     | **************************************
[2025-04-19 15:17:25] 2025-04-19 13:17:06,202 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-19 15:17:25] 2025-04-19 13:17:06,203 | INFO     | **************************************
[2025-04-19 15:17:25] 2025-04-19 13:17:06,203 | INFO     | 
[2025-04-19 15:17:25] 2025-04-19 13:17:06,206 | INFO     | architecture information:
[2025-04-19 15:17:25] 2025-04-19 13:17:06,206 | INFO     | executing command: cat /etc/os-release
[2025-04-19 15:17:25] 2025-04-19 13:17:06,221 | INFO     | cat /etc/os-release:
[2025-04-19 15:17:25] NAME="CentOS Linux"
[2025-04-19 15:17:25] VERSION="7 (Core)"
[2025-04-19 15:17:25] ID="centos"
[2025-04-19 15:17:25] ID_LIKE="rhel fedora"
[2025-04-19 15:17:25] VERSION_ID="7"
[2025-04-19 15:17:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-19 15:17:25] ANSI_COLOR="0;31"
[2025-04-19 15:17:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-19 15:17:25] HOME_URL="https://www.centos.org/"
[2025-04-19 15:17:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-19 15:17:25] 
[2025-04-19 15:17:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-19 15:17:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-19 15:17:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-19 15:17:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-19 15:17:25] 
[2025-04-19 15:17:25] 2025-04-19 13:17:06,221 | INFO     | **************************************
[2025-04-19 15:17:25] 2025-04-19 13:17:06,724 | INFO     | executing command: df -mP /scratch/boinc/var/slot36/slots/0
[2025-04-19 15:17:25] 2025-04-19 13:17:06,740 | INFO     | sufficient remaining disk space (655192227840 B)
[2025-04-19 15:17:25] 2025-04-19 13:17:06,740 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-19 15:17:25] 2025-04-19 13:17:06,741 | INFO     | current server update state: UPDATING_FINAL
[2025-04-19 15:17:25] 2025-04-19 13:17:06,741 | INFO     | update_server=False
[2025-04-19 15:17:25] 2025-04-19 13:17:06,741 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-19 15:17:25] 2025-04-19 13:17:06,803 | INFO     | PID=1607844 has CPU usage=13.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-04-19 15:17:25] 2025-04-19 13:17:06,804 | INFO     | .. there are 13 such processes running
[2025-04-19 15:17:25] 2025-04-19 13:17:06,804 | INFO     | found 0 job(s) in 20 queues
[2025-04-19 15:17:25] 2025-04-19 13:17:06,804 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-19 15:17:25] 2025-04-19 13:17:06,804 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-19 15:17:25] 2025-04-19 13:17:07,023 | INFO     | all payload control threads have been joined
[2025-04-19 15:17:25] 2025-04-19 13:17:07,037 | INFO     | all job control threads have been joined
[2025-04-19 15:17:25] 2025-04-19 13:17:07,098 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-19 15:17:25] 2025-04-19 13:17:07,125 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-04-19 15:17:25] 2025-04-19 13:17:07,126 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-04-19 15:17:25] 2025-04-19 13:17:07,126 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-19 15:17:25] 2025-04-19 13:17:07,126 | INFO     | will abort loop
[2025-04-19 15:17:25] 2025-04-19 13:17:07,317 | INFO     | all data control threads have been joined
[2025-04-19 15:17:25] 2025-04-19 13:17:07,745 | INFO     | [job] retrieve thread has finished
[2025-04-19 15:17:25] 2025-04-19 13:17:07,754 | INFO     | [payload] execute_payloads thread has finished
[2025-04-19 15:17:25] 2025-04-19 13:17:07,817 | INFO     | [job] create_data_payload thread has finished
[2025-04-19 15:17:25] 2025-04-19 13:17:07,951 | INFO     | [job] validate thread has finished
[2025-04-19 15:17:25] 2025-04-19 13:17:08,028 | INFO     | [payload] control thread has finished
[2025-04-19 15:17:25] 2025-04-19 13:17:08,042 | INFO     | [job] control thread has finished
[2025-04-19 15:17:25] 2025-04-19 13:17:08,130 | INFO     | [job] job monitor thread has finished
[2025-04-19 15:17:25] 2025-04-19 13:17:08,322 | INFO     | [data] control thread has finished
[2025-04-19 15:17:25] 2025-04-19 13:17:08,510 | INFO     | [payload] validate_pre thread has finished
[2025-04-19 15:17:25] 2025-04-19 13:17:08,584 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-19 15:17:25] 2025-04-19 13:17:08,689 | INFO     | [data] copytool_in thread has finished
[2025-04-19 15:17:25] 2025-04-19 13:17:08,690 | INFO     | [payload] failed_post thread has finished
[2025-04-19 15:17:25] 2025-04-19 13:17:09,104 | INFO     | [data] copytool_out thread has finished
[2025-04-19 15:17:25] 2025-04-19 13:17:09,206 | INFO     | [payload] validate_post thread has finished
[2025-04-19 15:17:25] 2025-04-19 13:17:09,661 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-19 15:17:25] 2025-04-19 13:17:10,666 | INFO     | [job] queue monitor thread has finished
[2025-04-19 15:17:25] 2025-04-19 13:17:12,589 | INFO     | [data] queue_monitor thread has finished
[2025-04-19 15:17:25] 2025-04-19 13:17:17,394 | INFO     | job.realtimelogging is not enabled
[2025-04-19 15:17:25] 2025-04-19 13:17:18,396 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-19 15:17:25] 2025-04-19 13:17:19,927 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23006777485120)>', '<ExcThread(monitor, started 23006533342976)>']
[2025-04-19 15:17:25] 2025-04-19 13:17:20,858 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-19 15:17:25] 2025-04-19 13:17:20,859 | INFO     | [monitor] control thread has ended
[2025-04-19 15:17:25] 2025-04-19 13:17:24,952 | INFO     | all workflow threads have been joined
[2025-04-19 15:17:25] 2025-04-19 13:17:24,953 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-19 15:17:25] 2025-04-19 13:17:24,953 | INFO     | traces error code: 0
[2025-04-19 15:17:25] 2025-04-19 13:17:24,953 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-19 15:17:25] 2025-04-19 13:17:25,108 [wrapper] ==== pilot stdout END ====
[2025-04-19 15:17:25] 2025-04-19 13:17:25,111 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-19 15:17:25] 2025-04-19 13:17:25,114 [wrapper] pilotpid: 1607844
[2025-04-19 15:17:25] 2025-04-19 13:17:25,117 [wrapper] Pilot exit status: 0
[2025-04-19 15:17:25] 2025-04-19 13:17:25,128 [wrapper] pandaids: 6606397427
[2025-04-19 15:17:25] 2025-04-19 13:17:25,196 [wrapper] cleanup supervisor_pilot 2043829 1607845
[2025-04-19 15:17:25] 2025-04-19 13:17:25,199 [wrapper] Test setup, not cleaning
[2025-04-19 15:17:25] 2025-04-19 13:17:25,202 [wrapper] apfmon messages muted
[2025-04-19 15:17:25] 2025-04-19 13:17:25,205 [wrapper] ==== wrapper stdout END ====
[2025-04-19 15:17:25] 2025-04-19 13:17:25,208 [wrapper] ==== wrapper stderr END ====
[2025-04-19 15:17:25]  *** Error codes and diagnostics ***
[2025-04-19 15:17:25]     "exeErrorCode": 0,
[2025-04-19 15:17:25]     "exeErrorDiag": "",
[2025-04-19 15:17:25]     "pilotErrorCode": 0,
[2025-04-19 15:17:25]     "pilotErrorDiag": "",
[2025-04-19 15:17:25]  *** Listing of results directory ***
[2025-04-19 15:17:25] total 410924
[2025-04-19 15:17:25] -rw-r--r-- 1 boinc boinc    495897 Apr 18 12:44 pilot3.tar.gz
[2025-04-19 15:17:25] -rw-r--r-- 1 boinc boinc      5111 Apr 18 13:15 queuedata.json
[2025-04-19 15:17:25] -rwx------ 1 boinc boinc     37140 Apr 18 13:16 runpilot2-wrapper.sh
[2025-04-19 15:17:25] -rw-r--r-- 1 boinc boinc       100 Apr 19 12:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-19 15:17:25] -rwxr-xr-x 1 boinc boinc      7986 Apr 19 12:02 run_atlas
[2025-04-19 15:17:25] -rw-r--r-- 1 boinc boinc       105 Apr 19 12:02 job.xml
[2025-04-19 15:17:25] -rw-r--r-- 2 boinc boinc 222823375 Apr 19 12:02 EVNT.44075481._002665.pool.root.1
[2025-04-19 15:17:25] -rw-r--r-- 1 boinc boinc      6634 Apr 19 12:02 init_data.xml
[2025-04-19 15:17:25] -rw-r--r-- 2 boinc boinc    508896 Apr 19 12:02 input.tar.gz
[2025-04-19 15:17:25] -rw-r--r-- 2 boinc boinc     17569 Apr 19 12:02 start_atlas.sh
[2025-04-19 15:17:25] drwxrwx--x 2 boinc boinc      4096 Apr 19 12:02 shared
[2025-04-19 15:17:25] -rw-r--r-- 1 boinc boinc         0 Apr 19 12:02 boinc_lockfile
[2025-04-19 15:17:25] -rw-r--r-- 1 boinc boinc      2579 Apr 19 12:02 pandaJob.out
[2025-04-19 15:17:25] -rw------- 1 boinc boinc       424 Apr 19 12:02 setup.sh.local
[2025-04-19 15:17:25] -rw------- 1 boinc boinc    991300 Apr 19 12:02 agis_schedconf.cvmfs.json
[2025-04-19 15:17:25] drwx------ 4 boinc boinc      4096 Apr 19 12:02 pilot3
[2025-04-19 15:17:25] -rw------- 1 boinc boinc 191263557 Apr 19 15:16 HITS.44075483._068594.pool.root.1
[2025-04-19 15:17:25] -rw-r--r-- 1 boinc boinc       529 Apr 19 15:16 boinc_task_state.xml
[2025-04-19 15:17:25] -rw------- 1 boinc boinc        95 Apr 19 15:16 pilot_heartbeat.json
[2025-04-19 15:17:25] -rw------- 1 boinc boinc      1035 Apr 19 15:16 memory_monitor_summary.json
[2025-04-19 15:17:25] -rw------- 1 boinc boinc   1618536 Apr 19 15:16 agis_ddmendpoints.agis.ALL.json
[2025-04-19 15:17:25] -rw------- 1 boinc boinc    317583 Apr 19 15:16 log.44075483._068594.job.log.tgz.1
[2025-04-19 15:17:25] -rw-r--r-- 1 boinc boinc        27 Apr 19 15:17 wrapper_checkpoint.txt
[2025-04-19 15:17:25] -rw------- 1 boinc boinc      7726 Apr 19 15:17 heartbeat.json
[2025-04-19 15:17:25] -rw-r--r-- 1 boinc boinc      8192 Apr 19 15:17 boinc_mmap_file
[2025-04-19 15:17:25] -rw------- 1 boinc boinc      5017 Apr 19 15:17 pilotlog.txt
[2025-04-19 15:17:25] -rw------- 1 boinc boinc   1099580 Apr 19 15:17 log.44075483._068594.job.log.1
[2025-04-19 15:17:25] -rw------- 1 boinc boinc       357 Apr 19 15:17 output.list
[2025-04-19 15:17:25] -rw-r--r-- 1 boinc boinc       620 Apr 19 15:17 runtime_log
[2025-04-19 15:17:25] -rw------- 1 boinc boinc   1433600 Apr 19 15:17 result.tar.gz
[2025-04-19 15:17:25] -rw-r--r-- 1 boinc boinc     11424 Apr 19 15:17 runtime_log.err
[2025-04-19 15:17:25] -rw------- 1 boinc boinc       665 Apr 19 15:17 koSKDmEtyP7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDm7AfLDmT2QwLn.diag
[2025-04-19 15:17:25] -rw-r--r-- 1 boinc boinc     20756 Apr 19 15:17 stderr.txt
[2025-04-19 15:17:25] HITS file was successfully produced:
[2025-04-19 15:17:25] -rw------- 1 boinc boinc 191263557 Apr 19 15:16 shared/HITS.pool.root.1
[2025-04-19 15:17:25]  *** Contents of shared directory: ***
[2025-04-19 15:17:25] total 406312
[2025-04-19 15:17:25] -rw-r--r-- 2 boinc boinc 222823375 Apr 19 12:02 ATLAS.root_0
[2025-04-19 15:17:25] -rw-r--r-- 2 boinc boinc    508896 Apr 19 12:02 input.tar.gz
[2025-04-19 15:17:25] -rw-r--r-- 2 boinc boinc     17569 Apr 19 12:02 start_atlas.sh
[2025-04-19 15:17:25] -rw------- 1 boinc boinc 191263557 Apr 19 15:16 HITS.pool.root.1
[2025-04-19 15:17:25] -rw------- 1 boinc boinc   1433600 Apr 19 15:17 result.tar.gz
15:17:27 (1604152): run_atlas exited; CPU time 42893.568127
15:17:27 (1604152): called boinc_finish(0)

</stderr_txt>
]]>

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