Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:29:25 (18678): wrapper (7.7.26015): starting
10:29:25 (18678): wrapper: running run_atlas (--nthreads 10)
[2025-04-18 10:29:25] Arguments: --nthreads 10
[2025-04-18 10:29:25] Threads: 10
[2025-04-18 10:29:25] Checking for CVMFS
[2025-04-18 10:29:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-18 10:29:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-18 10:29:28] Running cvmfs_config stat atlas.cern.ch
[2025-04-18 10:29:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-18 10:29:30] 2.11.2.0 5576 41476 349680 145005 1 169 17131936 18432000 14524 130560 0 153090619 98.810 409821516 36646 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-18 10:29:30] CVMFS is ok
[2025-04-18 10:29:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-18 10:29:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-18 10:29:30] Further information can be found at the LHC@home message board.
[2025-04-18 10:29:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-18 10:29:30] Checking for apptainer binary...
[2025-04-18 10:29:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-18 10:29:30] Running /usr/bin/apptainer --version
[2025-04-18 10:29:30] apptainer version 1.3.2-1.el7
[2025-04-18 10:29:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-18 10:30:15] c-210-7.aglt2.org
[2025-04-18 10:30:15] apptainer works
[2025-04-18 10:30:15] Set ATHENA_PROC_NUMBER=10
[2025-04-18 10:30:15] Set ATHENA_CORE_NUMBER=10
[2025-04-18 10:30:16] Starting ATLAS job with PandaID=6606171381
[2025-04-18 10:30:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-19 01:25:32]  *** The last 200 lines of the pilot log: ***
[2025-04-19 01:25:32] 2025-04-19 05:24:49,913 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 01:25:32] 2025-04-19 05:24:50,467 | INFO     | PID=11706 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-04-19 01:25:32] 2025-04-19 05:24:50,468 | INFO     | .. there are 41 such processes running
[2025-04-19 01:25:32] 2025-04-19 05:24:52,420 | INFO     | monitor loop #2545: job 0:6606171381 is in state 'finished'
[2025-04-19 01:25:32] 2025-04-19 05:24:52,424 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 01:25:32] 2025-04-19 05:24:53,481 | INFO     | 53462s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-04-19 01:25:32] 2025-04-19 05:24:54,929 | INFO     | monitor loop #2546: job 0:6606171381 is in state 'finished'
[2025-04-19 01:25:32] 2025-04-19 05:24:54,929 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 01:25:32] 2025-04-19 05:24:57,435 | INFO     | monitor loop #2547: job 0:6606171381 is in state 'finished'
[2025-04-19 01:25:32] 2025-04-19 05:24:57,440 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 01:25:32] 2025-04-19 05:24:59,945 | INFO     | monitor loop #2548: job 0:6606171381 is in state 'finished'
[2025-04-19 01:25:32] 2025-04-19 05:24:59,945 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 01:25:32] 2025-04-19 05:25:02,450 | INFO     | monitor loop #2549: job 0:6606171381 is in state 'finished'
[2025-04-19 01:25:32] 2025-04-19 05:25:02,455 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 01:25:32] 2025-04-19 05:25:03,958 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-19 01:25:32] 2025-04-19 05:25:03,959 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6606171381/memory_monitor_summary.json (trf name=prmon)
[2025-04-19 01:25:32] 2025-04-19 05:25:03,959 | INFO     | extracted standard info from prmon json
[2025-04-19 01:25:32] 2025-04-19 05:25:03,960 | INFO     | extracted standard memory fields from prmon json
[2025-04-19 01:25:32] 2025-04-19 05:25:03,960 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-19 01:25:32] 2025-04-19 05:25:03,986 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-19 01:25:32] 2025-04-19 05:25:03,986 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-19 01:25:32] 2025-04-19 05:25:04,237 | INFO     | fitting pss+swap vs Time
[2025-04-19 01:25:32] 2025-04-19 05:25:04,283 | INFO     | sum of square deviations: 201390968218.17105
[2025-04-19 01:25:32] 2025-04-19 05:25:04,499 | INFO     | sum of deviations: 1851814219850.1218
[2025-04-19 01:25:32] 2025-04-19 05:25:04,500 | INFO     | mean x: 1745013767.3256352
[2025-04-19 01:25:32] 2025-04-19 05:25:04,500 | INFO     | mean y: 2478923.8683602773
[2025-04-19 01:25:32] 2025-04-19 05:25:04,500 | INFO     | -- intersect: -16043132936.277996
[2025-04-19 01:25:32] 2025-04-19 05:25:04,500 | INFO     | intersect: -16043132936.277996
[2025-04-19 01:25:32] 2025-04-19 05:25:04,501 | INFO     | chi2: 23.263744404121212
[2025-04-19 01:25:32] 2025-04-19 05:25:04,503 | INFO     | sum of square deviations: 197922845453.86786
[2025-04-19 01:25:32] 2025-04-19 05:25:04,522 | INFO     | sum of deviations: 1963089559394.4858
[2025-04-19 01:25:32] 2025-04-19 05:25:04,522 | INFO     | mean x: 1745013614.825784
[2025-04-19 01:25:32] 2025-04-19 05:25:04,522 | INFO     | mean y: 2483798.356562137
[2025-04-19 01:25:32] 2025-04-19 05:25:04,523 | INFO     | -- intersect: -17305361591.650097
[2025-04-19 01:25:32] 2025-04-19 05:25:04,523 | INFO     | intersect: -17305361591.650097
[2025-04-19 01:25:32] 2025-04-19 05:25:04,524 | INFO     | chi2: 21.711096926951704
[2025-04-19 01:25:32] 2025-04-19 05:25:04,524 | INFO     | current chi2=21.711096926951704 (change=6.674108218341901 %)
[2025-04-19 01:25:32] 2025-04-19 05:25:04,524 | INFO     | right removable region: 860
[2025-04-19 01:25:32] 2025-04-19 05:25:04,526 | INFO     | sum of square deviations: 197922619997.24283
[2025-04-19 01:25:32] 2025-04-19 05:25:04,649 | INFO     | sum of deviations: 1533404360199.6704
[2025-04-19 01:25:32] 2025-04-19 05:25:04,649 | INFO     | mean x: 1745013919.8304298
[2025-04-19 01:25:32] 2025-04-19 05:25:04,649 | INFO     | mean y: 2492923.1347270617
[2025-04-19 01:25:32] 2025-04-19 05:25:04,649 | INFO     | -- intersect: -13516992385.388243
[2025-04-19 01:25:32] 2025-04-19 05:25:04,650 | INFO     | intersect: -13516992385.388243
[2025-04-19 01:25:32] 2025-04-19 05:25:04,663 | INFO     | chi2: 17.913352336790446
[2025-04-19 01:25:32] 2025-04-19 05:25:04,663 | INFO     | current chi2=17.913352336790446 (change=22.99884306837095 %)
[2025-04-19 01:25:32] 2025-04-19 05:25:04,664 | INFO     | left removable region: 10
[2025-04-19 01:25:32] 2025-04-19 05:25:04,665 | INFO     | sum of square deviations: 190433207709.76883
[2025-04-19 01:25:32] 2025-04-19 05:25:04,883 | INFO     | sum of deviations: 1367872752615.0154
[2025-04-19 01:25:32] 2025-04-19 05:25:04,883 | INFO     | mean x: 1745013889.3364706
[2025-04-19 01:25:32] 2025-04-19 05:25:04,884 | INFO     | mean y: 2510263.618823529
[2025-04-19 01:25:32] 2025-04-19 05:25:04,884 | INFO     | -- intersect: -12531842231.22531
[2025-04-19 01:25:32] 2025-04-19 05:25:04,884 | INFO     | intersect: -12531842231.22531
[2025-04-19 01:25:32] 2025-04-19 05:25:04,907 | INFO     | chi2: 12.401083767778024
[2025-04-19 01:25:32] 2025-04-19 05:25:04,908 | INFO     | -- intersect: -12531842231.22531
[2025-04-19 01:25:32] 2025-04-19 05:25:04,908 | INFO     | current memory leak: 7.18 B/s (using 850 data points, chi2=12.40)
[2025-04-19 01:25:32] 2025-04-19 05:25:04,909 | INFO     | ..............................
[2025-04-19 01:25:32] 2025-04-19 05:25:04,909 | INFO     | . Timing measurements:
[2025-04-19 01:25:32] 2025-04-19 05:25:04,909 | INFO     | . get job = 0 s
[2025-04-19 01:25:32] 2025-04-19 05:25:04,909 | INFO     | . initial setup = 27 s
[2025-04-19 01:25:32] 2025-04-19 05:25:04,910 | INFO     | . payload setup = 162 s
[2025-04-19 01:25:32] 2025-04-19 05:25:04,910 | INFO     | . stage-in = 2 s
[2025-04-19 01:25:32] 2025-04-19 05:25:04,910 | INFO     | . payload execution = 52977 s
[2025-04-19 01:25:32] 2025-04-19 05:25:04,910 | INFO     | . stage-out = 10 s
[2025-04-19 01:25:32] 2025-04-19 05:25:04,910 | INFO     | . log creation = 2 s
[2025-04-19 01:25:32] 2025-04-19 05:25:04,910 | INFO     | ..............................
[2025-04-19 01:25:32] 2025-04-19 05:25:05,614 | INFO     | 
[2025-04-19 01:25:32] 2025-04-19 05:25:05,614 | INFO     | job summary report
[2025-04-19 01:25:32] 2025-04-19 05:25:05,614 | INFO     | --------------------------------------------------
[2025-04-19 01:25:32] 2025-04-19 05:25:05,614 | INFO     | PanDA job id: 6606171381
[2025-04-19 01:25:32] 2025-04-19 05:25:05,614 | INFO     | task id: 44075483
[2025-04-19 01:25:32] 2025-04-19 05:25:05,614 | INFO     | errors: (none)
[2025-04-19 01:25:32] 2025-04-19 05:25:05,614 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-19 01:25:32] 2025-04-19 05:25:05,614 | INFO     | pilot state: finished 
[2025-04-19 01:25:32] 2025-04-19 05:25:05,615 | INFO     | transexitcode: 0
[2025-04-19 01:25:32] 2025-04-19 05:25:05,615 | INFO     | exeerrorcode: 0
[2025-04-19 01:25:32] 2025-04-19 05:25:05,615 | INFO     | exeerrordiag: 
[2025-04-19 01:25:32] 2025-04-19 05:25:05,615 | INFO     | exitcode: 0
[2025-04-19 01:25:32] 2025-04-19 05:25:05,615 | INFO     | exitmsg: OK
[2025-04-19 01:25:32] 2025-04-19 05:25:05,615 | INFO     | cpuconsumptiontime: 57365 s
[2025-04-19 01:25:32] 2025-04-19 05:25:05,615 | INFO     | nevents: 400
[2025-04-19 01:25:32] 2025-04-19 05:25:05,615 | INFO     | neventsw: 0
[2025-04-19 01:25:32] 2025-04-19 05:25:05,615 | INFO     | pid: 22333
[2025-04-19 01:25:32] 2025-04-19 05:25:05,615 | INFO     | pgrp: 22333
[2025-04-19 01:25:32] 2025-04-19 05:25:05,616 | INFO     | corecount: 10
[2025-04-19 01:25:32] 2025-04-19 05:25:05,616 | INFO     | event service: False
[2025-04-19 01:25:32] 2025-04-19 05:25:05,616 | INFO     | sizes: {0: 2425946, 1: 2426547, 3: 2426631, 5: 2426886, 7: 2426886, 19: 2426914, 30: 2427070, 42: 2427098, 53: 2427154, 63: 2427182, 75: 2427210, 87: 2427518, 98: 
[2025-04-19 01:25:32] 2025-04-19 05:25:05,616 | INFO     | --------------------------------------------------
[2025-04-19 01:25:32] 2025-04-19 05:25:05,616 | INFO     | 
[2025-04-19 01:25:32] 2025-04-19 05:25:05,616 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-04-19 01:25:32] 2025-04-19 05:25:05,945 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-19 01:25:32] 2025-04-19 05:25:05,946 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-19 01:25:32] 2025-04-19 05:25:05,946 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-19 01:25:32] 2025-04-19 05:25:05,946 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-19 01:25:32] 2025-04-19 05:25:05,946 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-19 01:25:32] 2025-04-19 05:25:05,946 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-19 01:25:32] 2025-04-19 05:25:05,946 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-19 01:25:32] 2025-04-19 05:25:05,947 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-19 01:25:32] 2025-04-19 05:25:05,947 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-19 01:25:32] 2025-04-19 05:25:05,975 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-19 01:25:32] 2025-04-19 05:25:05,975 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-19 01:25:32] 2025-04-19 05:25:05,975 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-19 01:25:32] 2025-04-19 05:25:05,975 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-19 01:25:32] 2025-04-19 05:25:05,976 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-19 01:25:32] 2025-04-19 05:25:05,976 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-19 01:25:32] 2025-04-19 05:25:05,976 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-19 01:25:32] 2025-04-19 05:25:05,985 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-19 01:25:32] 2025-04-19 05:25:05,985 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-19 01:25:32] 2025-04-19 05:25:05,985 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-19 01:25:32] 2025-04-19 05:25:05,986 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-19 01:25:32] 2025-04-19 05:25:05,986 | INFO     | job 6606171381 has completed (purged errors)
[2025-04-19 01:25:32] 2025-04-19 05:25:05,986 | INFO     | overall cleanup function is called
[2025-04-19 01:25:32] 2025-04-19 05:25:07,038 | INFO     | --- collectZombieJob: --- 10, [22333]
[2025-04-19 01:25:32] 2025-04-19 05:25:07,038 | INFO     | zombie collector waiting for pid 22333
[2025-04-19 01:25:32] 2025-04-19 05:25:07,038 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-19 01:25:32] 2025-04-19 05:25:07,039 | INFO     | collected zombie processes
[2025-04-19 01:25:32] 2025-04-19 05:25:07,039 | INFO     | will attempt to kill all subprocesses of pid=22333
[2025-04-19 01:25:32] 2025-04-19 05:25:10,590 | INFO     | process IDs to be killed: [22333] (in reverse order)
[2025-04-19 01:25:32] 2025-04-19 05:25:12,858 | WARNING  | found no corresponding commands to process id(s)
[2025-04-19 01:25:32] 2025-04-19 05:25:12,858 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-19 01:25:32] 2025-04-19 05:25:13,121 | INFO     | did not find any defunct processes belonging to 22333
[2025-04-19 01:25:32] 2025-04-19 05:25:13,257 | INFO     | did not find any defunct processes belonging to 22333
[2025-04-19 01:25:32] 2025-04-19 05:25:13,257 | INFO     | ready for new job
[2025-04-19 01:25:32] 2025-04-19 05:25:13,257 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-19 01:25:32] 2025-04-19 05:25:13,264 | INFO     | **************************************
[2025-04-19 01:25:32] 2025-04-19 05:25:13,265 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-19 01:25:32] 2025-04-19 05:25:13,265 | INFO     | **************************************
[2025-04-19 01:25:32] 2025-04-19 05:25:13,265 | INFO     | 
[2025-04-19 01:25:32] 2025-04-19 05:25:13,271 | INFO     | architecture information:
[2025-04-19 01:25:32] 2025-04-19 05:25:13,302 | INFO     | executing command: cat /etc/os-release
[2025-04-19 01:25:32] 2025-04-19 05:25:13,632 | INFO     | cat /etc/os-release:
[2025-04-19 01:25:32] NAME="CentOS Linux"
[2025-04-19 01:25:32] VERSION="7 (Core)"
[2025-04-19 01:25:32] ID="centos"
[2025-04-19 01:25:32] ID_LIKE="rhel fedora"
[2025-04-19 01:25:32] VERSION_ID="7"
[2025-04-19 01:25:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-19 01:25:32] ANSI_COLOR="0;31"
[2025-04-19 01:25:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-19 01:25:32] HOME_URL="https://www.centos.org/"
[2025-04-19 01:25:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-19 01:25:32] 
[2025-04-19 01:25:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-19 01:25:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-19 01:25:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-19 01:25:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-19 01:25:32] 
[2025-04-19 01:25:32] 2025-04-19 05:25:13,633 | INFO     | **************************************
[2025-04-19 01:25:32] 2025-04-19 05:25:14,146 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-04-19 01:25:32] 2025-04-19 05:25:14,537 | INFO     | sufficient remaining disk space (57066651648 B)
[2025-04-19 01:25:32] 2025-04-19 05:25:14,546 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-19 01:25:32] 2025-04-19 05:25:14,547 | INFO     | current server update state: UPDATING_FINAL
[2025-04-19 01:25:32] 2025-04-19 05:25:14,547 | INFO     | update_server=False
[2025-04-19 01:25:32] 2025-04-19 05:25:14,547 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-19 01:25:32] 2025-04-19 05:25:14,547 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-19 01:25:32] 2025-04-19 05:25:14,547 | INFO     | aborting loop
[2025-04-19 01:25:32] 2025-04-19 05:25:14,622 | INFO     | all data control threads have been joined
[2025-04-19 01:25:32] 2025-04-19 05:25:14,682 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-19 01:25:32] 2025-04-19 05:25:14,790 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-19 01:25:32] 2025-04-19 05:25:15,430 | INFO     | all job control threads have been joined
[2025-04-19 01:25:32] 2025-04-19 05:25:15,553 | INFO     | [job] retrieve thread has finished
[2025-04-19 01:25:32] 2025-04-19 05:25:15,559 | INFO     | [job] job monitor thread has finished
[2025-04-19 01:25:32] 2025-04-19 05:25:15,610 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-19 01:25:32] 2025-04-19 05:25:15,628 | INFO     | [data] control thread has finished
[2025-04-19 01:25:32] 2025-04-19 05:25:15,637 | INFO     | [job] create_data_payload thread has finished
[2025-04-19 01:25:32] 2025-04-19 05:25:15,647 | INFO     | [payload] validate_pre thread has finished
[2025-04-19 01:25:32] 2025-04-19 05:25:15,688 | INFO     | [job] queue monitor thread has finished
[2025-04-19 01:25:32] 2025-04-19 05:25:16,041 | INFO     | all payload control threads have been joined
[2025-04-19 01:25:32] 2025-04-19 05:25:16,274 | INFO     | [payload] execute_payloads thread has finished
[2025-04-19 01:25:32] 2025-04-19 05:25:16,279 | INFO     | [data] copytool_in thread has finished
[2025-04-19 01:25:32] 2025-04-19 05:25:16,284 | INFO     | [job] validate thread has finished
[2025-04-19 01:25:32] 2025-04-19 05:25:16,429 | INFO     | [payload] failed_post thread has finished
[2025-04-19 01:25:32] 2025-04-19 05:25:16,436 | INFO     | [job] control thread has finished
[2025-04-19 01:25:32] 2025-04-19 05:25:16,833 | INFO     | [data] copytool_out thread has finished
[2025-04-19 01:25:32] 2025-04-19 05:25:16,965 | INFO     | [payload] validate_post thread has finished
[2025-04-19 01:25:32] 2025-04-19 05:25:17,047 | INFO     | [payload] control thread has finished
[2025-04-19 01:25:32] 2025-04-19 05:25:17,560 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-19 01:25:32] 2025-04-19 05:25:21,643 | INFO     | [data] queue_monitor thread has finished
[2025-04-19 01:25:32] 2025-04-19 05:25:21,708 | INFO     | PID=11706 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-04-19 01:25:32] 2025-04-19 05:25:21,708 | INFO     | .. there are 41 such processes running
[2025-04-19 01:25:32] 2025-04-19 05:25:21,709 | INFO     | found 0 job(s) in 20 queues
[2025-04-19 01:25:32] 2025-04-19 05:25:21,709 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-19 01:25:32] 2025-04-19 05:25:21,709 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-19 01:25:32] 2025-04-19 05:25:23,095 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140696006453056)>', '<ExcThread(monitor, started 140695704676096)>']
[2025-04-19 01:25:32] 2025-04-19 05:25:23,720 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-19 01:25:32] 2025-04-19 05:25:23,720 | INFO     | [monitor] control thread has ended
[2025-04-19 01:25:32] 2025-04-19 05:25:28,121 | INFO     | all workflow threads have been joined
[2025-04-19 01:25:32] 2025-04-19 05:25:28,121 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-19 01:25:32] 2025-04-19 05:25:28,122 | INFO     | traces error code: 0
[2025-04-19 01:25:32] 2025-04-19 05:25:28,122 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-19 01:25:32] 2025-04-19 05:25:29,498 [wrapper] ==== pilot stdout END ====
[2025-04-19 01:25:32] 2025-04-19 05:25:29,533 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-19 01:25:32] 2025-04-19 05:25:29,567 [wrapper] pilotpid: 11706
[2025-04-19 01:25:32] 2025-04-19 05:25:29,603 [wrapper] Pilot exit status: 0
[2025-04-19 01:25:32] 2025-04-19 05:25:29,867 [wrapper] pandaids: 6606171381
[2025-04-19 01:25:32] 2025-04-19 05:25:30,460 [wrapper] cleanup supervisor_pilot 37528 11707
[2025-04-19 01:25:32] 2025-04-19 05:25:30,507 [wrapper] Test setup, not cleaning
[2025-04-19 01:25:32] 2025-04-19 05:25:30,541 [wrapper] apfmon messages muted
[2025-04-19 01:25:32] 2025-04-19 05:25:30,573 [wrapper] ==== wrapper stdout END ====
[2025-04-19 01:25:32] 2025-04-19 05:25:30,607 [wrapper] ==== wrapper stderr END ====
[2025-04-19 01:25:32]  *** Error codes and diagnostics ***
[2025-04-19 01:25:32]     "exeErrorCode": 0,
[2025-04-19 01:25:32]     "exeErrorDiag": "",
[2025-04-19 01:25:32]     "pilotErrorCode": 0,
[2025-04-19 01:25:32]     "pilotErrorDiag": "",
[2025-04-19 01:25:32]  *** Listing of results directory ***
[2025-04-19 01:25:32] total 420736
[2025-04-19 01:25:32] -rw-r--r-- 1 boincer umatlas    495897 Apr 18 00:52 pilot3.tar.gz
[2025-04-19 01:25:32] -rw-r--r-- 1 boincer umatlas      5111 Apr 18 00:59 queuedata.json
[2025-04-19 01:25:32] -rwx------ 1 boincer umatlas     37140 Apr 18 01:00 runpilot2-wrapper.sh
[2025-04-19 01:25:32] -rw-r--r-- 1 boincer umatlas       100 Apr 18 10:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-19 01:25:32] -rwxr-xr-x 1 boincer umatlas      7986 Apr 18 10:29 run_atlas
[2025-04-19 01:25:32] -rw-r--r-- 1 boincer umatlas       105 Apr 18 10:29 job.xml
[2025-04-19 01:25:32] -rw-r--r-- 2 boincer umatlas 223182343 Apr 18 10:29 EVNT.44075481._001613.pool.root.1
[2025-04-19 01:25:32] -rw-r--r-- 2 boincer umatlas     17569 Apr 18 10:29 start_atlas.sh
[2025-04-19 01:25:32] drwxrwx--x 2 boincer umatlas      4096 Apr 18 10:29 shared
[2025-04-19 01:25:32] -rw-r--r-- 2 boincer umatlas    508898 Apr 18 10:29 input.tar.gz
[2025-04-19 01:25:32] -rw-r--r-- 1 boincer umatlas         0 Apr 18 10:29 boinc_lockfile
[2025-04-19 01:25:32] -rw-r--r-- 1 boincer umatlas      2579 Apr 18 10:30 pandaJob.out
[2025-04-19 01:25:32] -rw------- 1 boincer umatlas       467 Apr 18 10:30 setup.sh.local
[2025-04-19 01:25:32] -rw------- 1 boincer umatlas    990604 Apr 18 10:33 agis_schedconf.cvmfs.json
[2025-04-19 01:25:32] drwx------ 4 boincer umatlas      4096 Apr 18 10:34 pilot3
[2025-04-19 01:25:32] -rw------- 1 boincer umatlas 195322403 Apr 19 01:20 HITS.44075483._064525.pool.root.1
[2025-04-19 01:25:32] -rw-r--r-- 1 boincer umatlas       531 Apr 19 01:21 boinc_task_state.xml
[2025-04-19 01:25:32] -rw-r--r-- 1 boincer umatlas      6228 Apr 19 01:23 init_data.xml
[2025-04-19 01:25:32] -rw------- 1 boincer umatlas      1061 Apr 19 01:23 memory_monitor_summary.json
[2025-04-19 01:25:32] -rw------- 1 boincer umatlas   1618536 Apr 19 01:23 agis_ddmendpoints.agis.ALL.json
[2025-04-19 01:25:32] -rw------- 1 boincer umatlas    713968 Apr 19 01:23 log.44075483._064525.job.log.tgz.1
[2025-04-19 01:25:32] -rw------- 1 boincer umatlas        95 Apr 19 01:24 pilot_heartbeat.json
[2025-04-19 01:25:32] -rw------- 1 boincer umatlas      7765 Apr 19 01:25 heartbeat.json
[2025-04-19 01:25:32] -rw-r--r-- 1 boincer umatlas      8192 Apr 19 01:25 boinc_mmap_file
[2025-04-19 01:25:32] -rw-r--r-- 1 boincer umatlas        28 Apr 19 01:25 wrapper_checkpoint.txt
[2025-04-19 01:25:32] -rw------- 1 boincer umatlas      4746 Apr 19 01:25 pilotlog.txt
[2025-04-19 01:25:32] -rw------- 1 boincer umatlas   3519306 Apr 19 01:25 log.44075483._064525.job.log.1
[2025-04-19 01:25:32] -rw------- 1 boincer umatlas       357 Apr 19 01:25 output.list
[2025-04-19 01:25:32] -rw-r--r-- 1 boincer umatlas       620 Apr 19 01:25 runtime_log
[2025-04-19 01:25:32] -rw------- 1 boincer umatlas   4249600 Apr 19 01:25 result.tar.gz
[2025-04-19 01:25:32] -rw-r--r-- 1 boincer umatlas     11416 Apr 19 01:25 runtime_log.err
[2025-04-19 01:25:32] -rw------- 1 boincer umatlas       664 Apr 19 01:25 aulLDmq0sP7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmwSeLDmvfnUIo.diag
[2025-04-19 01:25:32] -rw-r--r-- 1 boincer umatlas     21630 Apr 19 01:25 stderr.txt
[2025-04-19 01:25:32] HITS file was successfully produced:
[2025-04-19 01:25:32] -rw------- 1 boincer umatlas 195322403 Apr 19 01:20 shared/HITS.pool.root.1
[2025-04-19 01:25:32]  *** Contents of shared directory: ***
[2025-04-19 01:25:32] total 413376
[2025-04-19 01:25:32] -rw-r--r-- 2 boincer umatlas 223182343 Apr 18 10:29 ATLAS.root_0
[2025-04-19 01:25:32] -rw-r--r-- 2 boincer umatlas     17569 Apr 18 10:29 start_atlas.sh
[2025-04-19 01:25:32] -rw-r--r-- 2 boincer umatlas    508898 Apr 18 10:29 input.tar.gz
[2025-04-19 01:25:32] -rw------- 1 boincer umatlas 195322403 Apr 19 01:20 HITS.pool.root.1
[2025-04-19 01:25:32] -rw------- 1 boincer umatlas   4249600 Apr 19 01:25 result.tar.gz
01:25:34 (18678): run_atlas exited; CPU time 59279.209844
01:25:34 (18678): called boinc_finish(0)

</stderr_txt>
]]>

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