Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:55:33 (9364): wrapper (7.7.26015): starting
08:55:33 (9364): wrapper: running run_atlas (--nthreads 12)
[2025-04-18 08:55:33] Arguments: --nthreads 12
[2025-04-18 08:55:33] Threads: 12
[2025-04-18 08:55:33] Checking for CVMFS
[2025-04-18 08:55:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-18 08:55:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-18 08:55:33] Running cvmfs_config stat atlas.cern.ch
[2025-04-18 08:55:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-18 08:55:33] 2.11.2.0 24956 368725 164676 145002 3 58 19542391 20275200 1 130560 0 23078716 99.970 7386912 54553 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-18 08:55:33] CVMFS is ok
[2025-04-18 08:55:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-18 08:55:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-18 08:55:33] Further information can be found at the LHC@home message board.
[2025-04-18 08:55:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-18 08:55:33] Checking for apptainer binary...
[2025-04-18 08:55:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-18 08:55:33] Running /usr/bin/apptainer --version
[2025-04-18 08:55:33] apptainer version 1.3.2-1.el7
[2025-04-18 08:55:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-18 08:55:35] c-205-8.aglt2.org
[2025-04-18 08:55:35] apptainer works
[2025-04-18 08:55:35] Set ATHENA_PROC_NUMBER=12
[2025-04-18 08:55:35] Set ATHENA_CORE_NUMBER=12
[2025-04-18 08:55:35] Starting ATLAS job with PandaID=6604614477
[2025-04-18 08:55:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-18 10:21:40]  *** The last 200 lines of the pilot log: ***
[2025-04-18 10:21:40]  replicas=None
[2025-04-18 10:21:40]  scope=mc23_13p6TeV
[2025-04-18 10:21:40]  status=None
[2025-04-18 10:21:40]  status_code=0
[2025-04-18 10:21:40]  storage_token=
[2025-04-18 10:21:40]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6604614477/log.44075483._046145.job.log.tgz.1
[2025-04-18 10:21:40]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fd/8d/log.44075483._046145.job.log.tgz.1
[2025-04-18 10:21:40]  workdir=None
[2025-04-18 10:21:40] ]
[2025-04-18 10:21:40] 2025-04-18 14:21:10,576 | INFO     | transferring file log.44075483._046145.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6604614477/log.44075483._046145.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-04-18 10:21:40] 2025-04-18 14:21:10,577 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6604614477/log.44075483._046145.job.log.tgz.1 /tmp/boinchome/slots/0/log.44075483._046145.job
[2025-04-18 10:21:40] 2025-04-18 14:21:10,597 | INFO     | adding to output.list: log.44075483._046145.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fd/8d/log.44075483._046145.job.log.tg
[2025-04-18 10:21:40] 2025-04-18 14:21:10,598 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-18 10:21:40] 2025-04-18 14:21:10,598 | INFO     | summary of transferred files:
[2025-04-18 10:21:40] 2025-04-18 14:21:10,598 | INFO     |  -- lfn=log.44075483._046145.job.log.tgz.1, status_code=0, status=transferred
[2025-04-18 10:21:40] 2025-04-18 14:21:10,598 | INFO     | stage-out finished correctly
[2025-04-18 10:21:40] 2025-04-18 14:21:12,225 | WARNING  | process 19380 can no longer be monitored (due to stat problems) - aborting
[2025-04-18 10:21:40] 2025-04-18 14:21:12,225 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6604614477/memory_monitor_summary.json (trf name=prmon)
[2025-04-18 10:21:40] 2025-04-18 14:21:12,317 | INFO     | number of running child processes to parent process 19380: 1
[2025-04-18 10:21:40] 2025-04-18 14:21:12,318 | INFO     | maximum number of monitored processes: 6
[2025-04-18 10:21:40] 2025-04-18 14:21:12,676 | INFO     | PID=12986 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-04-18 10:21:40] 2025-04-18 14:21:13,035 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-18 10:21:40] 2025-04-18 14:21:14,821 | INFO     | monitor loop #383: job 0:6604614477 is in state 'finished'
[2025-04-18 10:21:40] 2025-04-18 14:21:14,821 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-18 10:21:40] 2025-04-18 14:21:15,918 | INFO     | job 6604614477 has state=finished
[2025-04-18 10:21:40] 2025-04-18 14:21:15,918 | INFO     | preparing for final server update for job 6604614477 in state='finished'
[2025-04-18 10:21:40] 2025-04-18 14:21:15,982 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-04-18 10:21:40] 2025-04-18 14:21:15,983 | INFO     | this job has now completed (state=finished)
[2025-04-18 10:21:40] 2025-04-18 14:21:15,983 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-18 10:21:40] 2025-04-18 14:21:15,983 | INFO     | log transfer has been attempted: DONE
[2025-04-18 10:21:40] 2025-04-18 14:21:15,983 | INFO     | job 6604614477 has finished - writing final server update
[2025-04-18 10:21:40] 2025-04-18 14:21:15,983 | INFO     | total number of processed events: 400 (read)
[2025-04-18 10:21:40] 2025-04-18 14:21:15,984 | INFO     | executing command: lscpu
[2025-04-18 10:21:40] 2025-04-18 14:21:16,011 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-18 10:21:40] 2025-04-18 14:21:17,324 | INFO     | monitor loop #384: job 0:6604614477 is in state 'finished'
[2025-04-18 10:21:40] 2025-04-18 14:21:17,324 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-18 10:21:40] 2025-04-18 14:21:19,827 | INFO     | monitor loop #385: job 0:6604614477 is in state 'finished'
[2025-04-18 10:21:40] 2025-04-18 14:21:19,828 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-18 10:21:40] 2025-04-18 14:21:20,292 | INFO     | CPU arch script returned: x86-64-v2
[2025-04-18 10:21:40] 2025-04-18 14:21:20,293 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6604614477/memory_monitor_summary.json (trf name=prmon)
[2025-04-18 10:21:40] 2025-04-18 14:21:20,294 | INFO     | extracted standard info from prmon json
[2025-04-18 10:21:40] 2025-04-18 14:21:20,294 | INFO     | extracted standard memory fields from prmon json
[2025-04-18 10:21:40] 2025-04-18 14:21:20,294 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-18 10:21:40] 2025-04-18 14:21:20,295 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-18 10:21:40] 2025-04-18 14:21:20,295 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-18 10:21:40] 2025-04-18 14:21:20,297 | INFO     | fitting pss+swap vs Time
[2025-04-18 10:21:40] 2025-04-18 14:21:20,298 | INFO     | sum of square deviations: 141539398.0
[2025-04-18 10:21:40] 2025-04-18 14:21:20,298 | INFO     | sum of deviations: 23419036674.000004
[2025-04-18 10:21:40] 2025-04-18 14:21:20,298 | INFO     | mean x: 1744983600.0
[2025-04-18 10:21:40] 2025-04-18 14:21:20,299 | INFO     | mean y: 2538700.5064935065
[2025-04-18 10:21:40] 2025-04-18 14:21:20,299 | INFO     | -- intersect: -288721558627.7056
[2025-04-18 10:21:40] 2025-04-18 14:21:20,299 | INFO     | intersect: -288721558627.7056
[2025-04-18 10:21:40] 2025-04-18 14:21:20,299 | INFO     | chi2: 1.815498608419449
[2025-04-18 10:21:40] 2025-04-18 14:21:20,299 | INFO     | -- intersect: -288721558627.7056
[2025-04-18 10:21:40] 2025-04-18 14:21:20,299 | INFO     | current memory leak: 165.46 B/s (using 77 data points, chi2=1.82)
[2025-04-18 10:21:40] 2025-04-18 14:21:20,300 | INFO     | ..............................
[2025-04-18 10:21:40] 2025-04-18 14:21:20,300 | INFO     | . Timing measurements:
[2025-04-18 10:21:40] 2025-04-18 14:21:20,300 | INFO     | . get job = 0 s
[2025-04-18 10:21:40] 2025-04-18 14:21:20,300 | INFO     | . initial setup = 2 s
[2025-04-18 10:21:40] 2025-04-18 14:21:20,300 | INFO     | . payload setup = 7 s
[2025-04-18 10:21:40] 2025-04-18 14:21:20,300 | INFO     | . stage-in = 0 s
[2025-04-18 10:21:40] 2025-04-18 14:21:20,300 | INFO     | . payload execution = 5094 s
[2025-04-18 10:21:40] 2025-04-18 14:21:20,300 | INFO     | . stage-out = 0 s
[2025-04-18 10:21:40] 2025-04-18 14:21:20,300 | INFO     | . log creation = 0 s
[2025-04-18 10:21:40] 2025-04-18 14:21:20,301 | INFO     | ..............................
[2025-04-18 10:21:40] 2025-04-18 14:21:20,384 | INFO     | 
[2025-04-18 10:21:40] 2025-04-18 14:21:20,384 | INFO     | job summary report
[2025-04-18 10:21:40] 2025-04-18 14:21:20,384 | INFO     | --------------------------------------------------
[2025-04-18 10:21:40] 2025-04-18 14:21:20,385 | INFO     | PanDA job id: 6604614477
[2025-04-18 10:21:40] 2025-04-18 14:21:20,385 | INFO     | task id: 44075483
[2025-04-18 10:21:40] 2025-04-18 14:21:20,385 | INFO     | errors: (none)
[2025-04-18 10:21:40] 2025-04-18 14:21:20,385 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-18 10:21:40] 2025-04-18 14:21:20,385 | INFO     | pilot state: finished 
[2025-04-18 10:21:40] 2025-04-18 14:21:20,385 | INFO     | transexitcode: 0
[2025-04-18 10:21:40] 2025-04-18 14:21:20,386 | INFO     | exeerrorcode: 0
[2025-04-18 10:21:40] 2025-04-18 14:21:20,386 | INFO     | exeerrordiag: 
[2025-04-18 10:21:40] 2025-04-18 14:21:20,386 | INFO     | exitcode: 0
[2025-04-18 10:21:40] 2025-04-18 14:21:20,386 | INFO     | exitmsg: OK
[2025-04-18 10:21:40] 2025-04-18 14:21:20,386 | INFO     | cpuconsumptiontime: 48029 s
[2025-04-18 10:21:40] 2025-04-18 14:21:20,386 | INFO     | nevents: 400
[2025-04-18 10:21:40] 2025-04-18 14:21:20,386 | INFO     | neventsw: 0
[2025-04-18 10:21:40] 2025-04-18 14:21:20,387 | INFO     | pid: 19380
[2025-04-18 10:21:40] 2025-04-18 14:21:20,387 | INFO     | pgrp: 19380
[2025-04-18 10:21:40] 2025-04-18 14:21:20,387 | INFO     | corecount: 12
[2025-04-18 10:21:40] 2025-04-18 14:21:20,387 | INFO     | event service: False
[2025-04-18 10:21:40] 2025-04-18 14:21:20,387 | INFO     | sizes: {0: 2425945, 1: 2426801, 6: 2427007, 12: 2427035, 5106: 2453211, 5107: 2462152, 5109: 2462336, 5116: 2462506}
[2025-04-18 10:21:40] 2025-04-18 14:21:20,387 | INFO     | --------------------------------------------------
[2025-04-18 10:21:40] 2025-04-18 14:21:20,388 | INFO     | 
[2025-04-18 10:21:40] 2025-04-18 14:21:20,388 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-04-18 10:21:40] 2025-04-18 14:21:20,409 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-18 10:21:40] 2025-04-18 14:21:20,409 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-18 10:21:40] 2025-04-18 14:21:20,409 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-18 10:21:40] 2025-04-18 14:21:20,410 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-18 10:21:40] 2025-04-18 14:21:20,410 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-18 10:21:40] 2025-04-18 14:21:20,410 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-18 10:21:40] 2025-04-18 14:21:20,410 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-18 10:21:40] 2025-04-18 14:21:20,410 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-18 10:21:40] 2025-04-18 14:21:20,410 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-18 10:21:40] 2025-04-18 14:21:20,411 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-18 10:21:40] 2025-04-18 14:21:20,411 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-18 10:21:40] 2025-04-18 14:21:20,411 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-18 10:21:40] 2025-04-18 14:21:20,411 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-18 10:21:40] 2025-04-18 14:21:20,411 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-18 10:21:40] 2025-04-18 14:21:20,412 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-18 10:21:40] 2025-04-18 14:21:20,412 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-18 10:21:40] 2025-04-18 14:21:20,412 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-18 10:21:40] 2025-04-18 14:21:20,412 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-18 10:21:40] 2025-04-18 14:21:20,412 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-18 10:21:40] 2025-04-18 14:21:20,412 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-18 10:21:40] 2025-04-18 14:21:20,413 | INFO     | job 6604614477 has completed (purged errors)
[2025-04-18 10:21:40] 2025-04-18 14:21:20,413 | INFO     | overall cleanup function is called
[2025-04-18 10:21:40] 2025-04-18 14:21:21,421 | INFO     | --- collectZombieJob: --- 10, [19380]
[2025-04-18 10:21:40] 2025-04-18 14:21:21,421 | INFO     | zombie collector waiting for pid 19380
[2025-04-18 10:21:40] 2025-04-18 14:21:21,422 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-18 10:21:40] 2025-04-18 14:21:21,422 | INFO     | collected zombie processes
[2025-04-18 10:21:40] 2025-04-18 14:21:21,422 | INFO     | will attempt to kill all subprocesses of pid=19380
[2025-04-18 10:21:40] 2025-04-18 14:21:21,516 | INFO     | process IDs to be killed: [19380] (in reverse order)
[2025-04-18 10:21:40] 2025-04-18 14:21:21,567 | WARNING  | found no corresponding commands to process id(s)
[2025-04-18 10:21:40] 2025-04-18 14:21:21,568 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-18 10:21:40] 2025-04-18 14:21:21,571 | INFO     | did not find any defunct processes belonging to 19380
[2025-04-18 10:21:40] 2025-04-18 14:21:21,575 | INFO     | did not find any defunct processes belonging to 19380
[2025-04-18 10:21:40] 2025-04-18 14:21:21,575 | INFO     | ready for new job
[2025-04-18 10:21:40] 2025-04-18 14:21:21,575 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-18 10:21:40] 2025-04-18 14:21:21,577 | INFO     | **************************************
[2025-04-18 10:21:40] 2025-04-18 14:21:21,577 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-18 10:21:40] 2025-04-18 14:21:21,577 | INFO     | **************************************
[2025-04-18 10:21:40] 2025-04-18 14:21:21,577 | INFO     | 
[2025-04-18 10:21:40] 2025-04-18 14:21:21,578 | INFO     | architecture information:
[2025-04-18 10:21:40] 2025-04-18 14:21:21,578 | INFO     | executing command: cat /etc/os-release
[2025-04-18 10:21:40] 2025-04-18 14:21:21,593 | INFO     | cat /etc/os-release:
[2025-04-18 10:21:40] NAME="CentOS Linux"
[2025-04-18 10:21:40] VERSION="7 (Core)"
[2025-04-18 10:21:40] ID="centos"
[2025-04-18 10:21:40] ID_LIKE="rhel fedora"
[2025-04-18 10:21:40] VERSION_ID="7"
[2025-04-18 10:21:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-18 10:21:40] ANSI_COLOR="0;31"
[2025-04-18 10:21:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-18 10:21:40] HOME_URL="https://www.centos.org/"
[2025-04-18 10:21:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-18 10:21:40] 
[2025-04-18 10:21:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-18 10:21:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-18 10:21:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-18 10:21:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-18 10:21:40] 
[2025-04-18 10:21:40] 2025-04-18 14:21:21,593 | INFO     | **************************************
[2025-04-18 10:21:40] 2025-04-18 14:21:22,096 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-04-18 10:21:40] 2025-04-18 14:21:22,112 | INFO     | sufficient remaining disk space (29390536704 B)
[2025-04-18 10:21:40] 2025-04-18 14:21:22,113 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-18 10:21:40] 2025-04-18 14:21:22,113 | INFO     | current server update state: UPDATING_FINAL
[2025-04-18 10:21:40] 2025-04-18 14:21:22,113 | INFO     | update_server=False
[2025-04-18 10:21:40] 2025-04-18 14:21:22,113 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-18 10:21:40] 2025-04-18 14:21:22,114 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-18 10:21:40] 2025-04-18 14:21:22,114 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-18 10:21:40] 2025-04-18 14:21:22,129 | INFO     | all job control threads have been joined
[2025-04-18 10:21:40] 2025-04-18 14:21:22,136 | INFO     | all payload control threads have been joined
[2025-04-18 10:21:40] 2025-04-18 14:21:22,331 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-04-18 10:21:40] 2025-04-18 14:21:22,331 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-04-18 10:21:40] 2025-04-18 14:21:22,331 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-18 10:21:40] 2025-04-18 14:21:22,331 | INFO     | will abort loop
[2025-04-18 10:21:40] 2025-04-18 14:21:22,484 | INFO     | all data control threads have been joined
[2025-04-18 10:21:40] 2025-04-18 14:21:22,699 | INFO     | found 0 job(s) in 20 queues
[2025-04-18 10:21:40] 2025-04-18 14:21:22,699 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-18 10:21:40] 2025-04-18 14:21:22,699 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-18 10:21:40] 2025-04-18 14:21:23,119 | INFO     | [job] retrieve thread has finished
[2025-04-18 10:21:40] 2025-04-18 14:21:23,119 | INFO     | [job] queue monitor thread has finished
[2025-04-18 10:21:40] 2025-04-18 14:21:23,132 | INFO     | [job] control thread has finished
[2025-04-18 10:21:40] 2025-04-18 14:21:23,141 | INFO     | [payload] control thread has finished
[2025-04-18 10:21:40] 2025-04-18 14:21:23,256 | INFO     | [job] create_data_payload thread has finished
[2025-04-18 10:21:40] 2025-04-18 14:21:23,337 | INFO     | [job] job monitor thread has finished
[2025-04-18 10:21:40] 2025-04-18 14:21:23,487 | INFO     | [data] control thread has finished
[2025-04-18 10:21:40] 2025-04-18 14:21:23,617 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-18 10:21:40] 2025-04-18 14:21:23,690 | INFO     | [payload] validate_post thread has finished
[2025-04-18 10:21:40] 2025-04-18 14:21:23,784 | INFO     | [job] validate thread has finished
[2025-04-18 10:21:40] 2025-04-18 14:21:23,789 | INFO     | [data] copytool_in thread has finished
[2025-04-18 10:21:40] 2025-04-18 14:21:24,120 | INFO     | [data] copytool_out thread has finished
[2025-04-18 10:21:40] 2025-04-18 14:21:24,183 | INFO     | [payload] failed_post thread has finished
[2025-04-18 10:21:40] 2025-04-18 14:21:24,308 | INFO     | [payload] execute_payloads thread has finished
[2025-04-18 10:21:40] 2025-04-18 14:21:24,364 | INFO     | [payload] validate_pre thread has finished
[2025-04-18 10:21:40] 2025-04-18 14:21:27,623 | INFO     | [data] queue_monitor thread has finished
[2025-04-18 10:21:40] 2025-04-18 14:21:32,442 | INFO     | job.realtimelogging is not enabled
[2025-04-18 10:21:40] 2025-04-18 14:21:33,443 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-18 10:21:40] 2025-04-18 14:21:35,177 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140501429618496)>', '<ExcThread(monitor, started 140500820535040)>']
[2025-04-18 10:21:40] 2025-04-18 14:21:35,759 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-18 10:21:40] 2025-04-18 14:21:35,759 | INFO     | [monitor] control thread has ended
[2025-04-18 10:21:40] 2025-04-18 14:21:40,203 | INFO     | all workflow threads have been joined
[2025-04-18 10:21:40] 2025-04-18 14:21:40,203 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-18 10:21:40] 2025-04-18 14:21:40,203 | INFO     | traces error code: 0
[2025-04-18 10:21:40] 2025-04-18 14:21:40,203 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-18 10:21:40] 2025-04-18 14:21:40,283 [wrapper] ==== pilot stdout END ====
[2025-04-18 10:21:40] 2025-04-18 14:21:40,286 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-18 10:21:40] 2025-04-18 14:21:40,290 [wrapper] pilotpid: 12986
[2025-04-18 10:21:40] 2025-04-18 14:21:40,293 [wrapper] Pilot exit status: 0
[2025-04-18 10:21:40] 2025-04-18 14:21:40,307 [wrapper] pandaids: 6604614477
[2025-04-18 10:21:40] 2025-04-18 14:21:40,347 [wrapper] cleanup supervisor_pilot 18834 12987
[2025-04-18 10:21:40] 2025-04-18 14:21:40,350 [wrapper] Test setup, not cleaning
[2025-04-18 10:21:40] 2025-04-18 14:21:40,354 [wrapper] apfmon messages muted
[2025-04-18 10:21:40] 2025-04-18 14:21:40,358 [wrapper] ==== wrapper stdout END ====
[2025-04-18 10:21:40] 2025-04-18 14:21:40,362 [wrapper] ==== wrapper stderr END ====
[2025-04-18 10:21:40]  *** Error codes and diagnostics ***
[2025-04-18 10:21:40]     "exeErrorCode": 0,
[2025-04-18 10:21:40]     "exeErrorDiag": "",
[2025-04-18 10:21:40]     "pilotErrorCode": 0,
[2025-04-18 10:21:40]     "pilotErrorDiag": "",
[2025-04-18 10:21:40]  *** Listing of results directory ***
[2025-04-18 10:21:40] total 419616
[2025-04-18 10:21:40] -rw-r--r-- 1 boincer umatlas    495897 Apr 16 17:20 pilot3.tar.gz
[2025-04-18 10:21:40] -rwx------ 1 boincer umatlas     37140 Apr 16 17:46 runpilot2-wrapper.sh
[2025-04-18 10:21:40] -rw-r--r-- 1 boincer umatlas      5111 Apr 16 17:46 queuedata.json
[2025-04-18 10:21:40] -rw-r--r-- 1 boincer umatlas       100 Apr 18 08:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-18 10:21:40] -rwxr-xr-x 1 boincer umatlas      7986 Apr 18 08:55 run_atlas
[2025-04-18 10:21:40] -rw-r--r-- 1 boincer umatlas       105 Apr 18 08:55 job.xml
[2025-04-18 10:21:40] -rw-r--r-- 2 boincer umatlas 223158669 Apr 18 08:55 EVNT.44075481._001804.pool.root.1
[2025-04-18 10:21:40] drwxrwx--x 2 boincer umatlas      4096 Apr 18 08:55 shared
[2025-04-18 10:21:40] -rw-r--r-- 2 boincer umatlas    508885 Apr 18 08:55 input.tar.gz
[2025-04-18 10:21:40] -rw-r--r-- 2 boincer umatlas     17569 Apr 18 08:55 start_atlas.sh
[2025-04-18 10:21:40] -rw-r--r-- 1 boincer umatlas         0 Apr 18 08:55 boinc_lockfile
[2025-04-18 10:21:40] -rw-r--r-- 1 boincer umatlas      2578 Apr 18 08:55 pandaJob.out
[2025-04-18 10:21:40] -rw------- 1 boincer umatlas       424 Apr 18 08:55 setup.sh.local
[2025-04-18 10:21:40] -rw------- 1 boincer umatlas    990604 Apr 18 08:55 agis_schedconf.cvmfs.json
[2025-04-18 10:21:40] -rw------- 1 boincer umatlas   1618536 Apr 18 08:55 agis_ddmendpoints.agis.ALL.json
[2025-04-18 10:21:40] drwx------ 4 boincer umatlas      4096 Apr 18 08:55 pilot3
[2025-04-18 10:21:40] -rw-r--r-- 1 boincer umatlas      5866 Apr 18 10:09 init_data.xml
[2025-04-18 10:21:40] -rw------- 1 boincer umatlas 200956393 Apr 18 10:20 HITS.44075483._046145.pool.root.1
[2025-04-18 10:21:40] -rw-r--r-- 1 boincer umatlas       529 Apr 18 10:20 boinc_task_state.xml
[2025-04-18 10:21:40] -rw------- 1 boincer umatlas        95 Apr 18 10:20 pilot_heartbeat.json
[2025-04-18 10:21:40] -rw------- 1 boincer umatlas      1051 Apr 18 10:21 memory_monitor_summary.json
[2025-04-18 10:21:40] -rw------- 1 boincer umatlas    369324 Apr 18 10:21 log.44075483._046145.job.log.tgz.1
[2025-04-18 10:21:40] -rw------- 1 boincer umatlas      7751 Apr 18 10:21 heartbeat.json
[2025-04-18 10:21:40] -rw-r--r-- 1 boincer umatlas      8192 Apr 18 10:21 boinc_mmap_file
[2025-04-18 10:21:40] -rw-r--r-- 1 boincer umatlas        27 Apr 18 10:21 wrapper_checkpoint.txt
[2025-04-18 10:21:40] -rw------- 1 boincer umatlas      4611 Apr 18 10:21 pilotlog.txt
[2025-04-18 10:21:40] -rw------- 1 boincer umatlas    485828 Apr 18 10:21 log.44075483._046145.job.log.1
[2025-04-18 10:21:40] -rw------- 1 boincer umatlas       357 Apr 18 10:21 output.list
[2025-04-18 10:21:40] -rw-r--r-- 1 boincer umatlas       620 Apr 18 10:21 runtime_log
[2025-04-18 10:21:40] -rw------- 1 boincer umatlas    870400 Apr 18 10:21 result.tar.gz
[2025-04-18 10:21:40] -rw------- 1 boincer umatlas       657 Apr 18 10:21 WTgLDmUlPP7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmDB3KDmLPR6jm.diag
[2025-04-18 10:21:40] -rw-r--r-- 1 boincer umatlas     11010 Apr 18 10:21 runtime_log.err
[2025-04-18 10:21:40] -rw-r--r-- 1 boincer umatlas     21855 Apr 18 10:21 stderr.txt
[2025-04-18 10:21:40] HITS file was successfully produced:
[2025-04-18 10:21:40] -rw------- 1 boincer umatlas 200956393 Apr 18 10:20 shared/HITS.pool.root.1
[2025-04-18 10:21:40]  *** Contents of shared directory: ***
[2025-04-18 10:21:40] total 415556
[2025-04-18 10:21:40] -rw-r--r-- 2 boincer umatlas 223158669 Apr 18 08:55 ATLAS.root_0
[2025-04-18 10:21:40] -rw-r--r-- 2 boincer umatlas    508885 Apr 18 08:55 input.tar.gz
[2025-04-18 10:21:40] -rw-r--r-- 2 boincer umatlas     17569 Apr 18 08:55 start_atlas.sh
[2025-04-18 10:21:40] -rw------- 1 boincer umatlas 200956393 Apr 18 10:20 HITS.pool.root.1
[2025-04-18 10:21:40] -rw------- 1 boincer umatlas    870400 Apr 18 10:21 result.tar.gz
10:21:42 (9364): run_atlas exited; CPU time 48004.525812
10:21:42 (9364): called boinc_finish(0)

</stderr_txt>
]]>

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