Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
16:21:50 (1015158): wrapper (7.7.26015): starting
16:21:50 (1015158): wrapper: running run_atlas (--nthreads 3)
[2025-04-19 16:21:50] Arguments: --nthreads 3
[2025-04-19 16:21:50] Threads: 3
[2025-04-19 16:21:50] Checking for CVMFS
[2025-04-19 16:21:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-19 16:21:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-19 16:21:50] Running cvmfs_config stat atlas.cern.ch
[2025-04-19 16:21:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-19 16:21:51] 2.9.2.0 2882 4290 76968 145041 2 55 26419694 36864000 0 130560 0 2614000 99.986 1028441 12691 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-04-19 16:21:51] CVMFS is ok
[2025-04-19 16:21:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-19 16:21:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-19 16:21:51] Further information can be found at the LHC@home message board.
[2025-04-19 16:21:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-19 16:21:51] Checking for apptainer binary...
[2025-04-19 16:21:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-19 16:21:51] Running /usr/bin/apptainer --version
[2025-04-19 16:21:51] apptainer version 1.3.6-6.1
[2025-04-19 16:21:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-19 16:21:51] thA333
[2025-04-19 16:21:51] apptainer works
[2025-04-19 16:21:51] Set ATHENA_PROC_NUMBER=3
[2025-04-19 16:21:51] Set ATHENA_CORE_NUMBER=3
[2025-04-19 16:21:51] Starting ATLAS job with PandaID=6603701224
[2025-04-19 16:21:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-19 17:55:12]  *** The last 200 lines of the pilot log: ***
[2025-04-19 17:55:12]  protocol_id=None
[2025-04-19 17:55:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-19 17:55:12]  replicas=None
[2025-04-19 17:55:12]  scope=mc23_13p6TeV
[2025-04-19 17:55:12]  status=None
[2025-04-19 17:55:12]  status_code=0
[2025-04-19 17:55:12]  storage_token=
[2025-04-19 17:55:12]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6603701224/log.44075483._036381.job.log.tgz.1
[2025-04-19 17:55:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b3/4c/log.44075483._036381.job.log.tgz.1
[2025-04-19 17:55:12]  workdir=None
[2025-04-19 17:55:12] ]
[2025-04-19 17:55:12] 2025-04-19 15:54:45,798 | INFO     | transferring file log.44075483._036381.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6603701224/log.44075483._036381.job.log.tgz.1 to /local/data/boinc/
[2025-04-19 17:55:12] 2025-04-19 15:54:45,798 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6603701224/log.44075483._036381.job.log.tgz.1 /local/data/boinc/slots/0/log.44075483._0363
[2025-04-19 17:55:12] 2025-04-19 15:54:45,811 | INFO     | adding to output.list: log.44075483._036381.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b3/4c/log.44075483._036381.job.log.tg
[2025-04-19 17:55:12] 2025-04-19 15:54:45,811 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-19 17:55:12] 2025-04-19 15:54:45,811 | INFO     | summary of transferred files:
[2025-04-19 17:55:12] 2025-04-19 15:54:45,811 | INFO     |  -- lfn=log.44075483._036381.job.log.tgz.1, status_code=0, status=transferred
[2025-04-19 17:55:12] 2025-04-19 15:54:45,811 | INFO     | stage-out finished correctly
[2025-04-19 17:55:12] 2025-04-19 15:54:45,843 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-19 17:55:12] 2025-04-19 15:54:48,088 | INFO     | job 6603701224 has state=finished
[2025-04-19 17:55:12] 2025-04-19 15:54:48,088 | INFO     | preparing for final server update for job 6603701224 in state='finished'
[2025-04-19 17:55:12] 2025-04-19 15:54:48,089 | INFO     | this job has now completed (state=finished)
[2025-04-19 17:55:12] 2025-04-19 15:54:48,089 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-19 17:55:12] 2025-04-19 15:54:48,090 | INFO     | log transfer has been attempted: DONE
[2025-04-19 17:55:12] 2025-04-19 15:54:48,090 | INFO     | job 6603701224 has finished - writing final server update
[2025-04-19 17:55:12] 2025-04-19 15:54:48,091 | INFO     | total number of processed events: 400 (read)
[2025-04-19 17:55:12] 2025-04-19 15:54:48,094 | INFO     | executing command: lscpu
[2025-04-19 17:55:12] 2025-04-19 15:54:48,112 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-19 17:55:12] 2025-04-19 15:54:48,467 | WARNING  | process 1025271 can no longer be monitored (due to stat problems) - aborting
[2025-04-19 17:55:12] 2025-04-19 15:54:48,467 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6603701224/memory_monitor_summary.json (trf name=prmon)
[2025-04-19 17:55:12] 2025-04-19 15:54:48,517 | INFO     | number of running child processes to parent process 1025271: 1
[2025-04-19 17:55:12] 2025-04-19 15:54:48,518 | INFO     | maximum number of monitored processes: 6
[2025-04-19 17:55:12] 2025-04-19 15:54:51,020 | INFO     | monitor loop #426: job 0:6603701224 is in state 'finished'
[2025-04-19 17:55:12] 2025-04-19 15:54:51,020 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 17:55:12] 2025-04-19 15:54:53,506 | INFO     | PID=1018820 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-04-19 17:55:12] 2025-04-19 15:54:53,523 | INFO     | monitor loop #427: job 0:6603701224 is in state 'finished'
[2025-04-19 17:55:12] 2025-04-19 15:54:53,523 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-19 17:55:12] 2025-04-19 15:54:53,796 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-19 17:55:12] 2025-04-19 15:54:53,796 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6603701224/memory_monitor_summary.json (trf name=prmon)
[2025-04-19 17:55:12] 2025-04-19 15:54:53,797 | INFO     | extracted standard info from prmon json
[2025-04-19 17:55:12] 2025-04-19 15:54:53,797 | INFO     | extracted standard memory fields from prmon json
[2025-04-19 17:55:12] 2025-04-19 15:54:53,797 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-19 17:55:12] 2025-04-19 15:54:53,797 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-19 17:55:12] 2025-04-19 15:54:53,797 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-19 17:55:12] 2025-04-19 15:54:53,798 | INFO     | fitting pss+swap vs Time
[2025-04-19 17:55:12] 2025-04-19 15:54:53,798 | INFO     | sum of square deviations: 183761585.0
[2025-04-19 17:55:12] 2025-04-19 15:54:53,798 | INFO     | sum of deviations: 2202012769.999995
[2025-04-19 17:55:12] 2025-04-19 15:54:53,798 | INFO     | mean x: 1745075385.5
[2025-04-19 17:55:12] 2025-04-19 15:54:53,798 | INFO     | mean y: 2422249.619047619
[2025-04-19 17:55:12] 2025-04-19 15:54:53,798 | INFO     | -- intersect: -20908794224.07247
[2025-04-19 17:55:12] 2025-04-19 15:54:53,798 | INFO     | intersect: -20908794224.07247
[2025-04-19 17:55:12] 2025-04-19 15:54:53,798 | INFO     | chi2: 1.0621224910099394
[2025-04-19 17:55:12] 2025-04-19 15:54:53,798 | INFO     | -- intersect: -20908794224.07247
[2025-04-19 17:55:12] 2025-04-19 15:54:53,798 | INFO     | current memory leak: 11.98 B/s (using 84 data points, chi2=1.06)
[2025-04-19 17:55:12] 2025-04-19 15:54:53,799 | INFO     | ..............................
[2025-04-19 17:55:12] 2025-04-19 15:54:53,799 | INFO     | . Timing measurements:
[2025-04-19 17:55:12] 2025-04-19 15:54:53,799 | INFO     | . get job = 0 s
[2025-04-19 17:55:12] 2025-04-19 15:54:53,799 | INFO     | . initial setup = 1 s
[2025-04-19 17:55:12] 2025-04-19 15:54:53,799 | INFO     | . payload setup = 5 s
[2025-04-19 17:55:12] 2025-04-19 15:54:53,799 | INFO     | . stage-in = 0 s
[2025-04-19 17:55:12] 2025-04-19 15:54:53,799 | INFO     | . payload execution = 5536 s
[2025-04-19 17:55:12] 2025-04-19 15:54:53,799 | INFO     | . stage-out = 0 s
[2025-04-19 17:55:12] 2025-04-19 15:54:53,799 | INFO     | . log creation = 0 s
[2025-04-19 17:55:12] 2025-04-19 15:54:53,799 | INFO     | ..............................
[2025-04-19 17:55:12] 2025-04-19 15:54:54,060 | INFO     | 
[2025-04-19 17:55:12] 2025-04-19 15:54:54,060 | INFO     | job summary report
[2025-04-19 17:55:12] 2025-04-19 15:54:54,060 | INFO     | --------------------------------------------------
[2025-04-19 17:55:12] 2025-04-19 15:54:54,060 | INFO     | PanDA job id: 6603701224
[2025-04-19 17:55:12] 2025-04-19 15:54:54,060 | INFO     | task id: 44075483
[2025-04-19 17:55:12] 2025-04-19 15:54:54,061 | INFO     | errors: (none)
[2025-04-19 17:55:12] 2025-04-19 15:54:54,061 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-19 17:55:12] 2025-04-19 15:54:54,061 | INFO     | pilot state: finished 
[2025-04-19 17:55:12] 2025-04-19 15:54:54,061 | INFO     | transexitcode: 0
[2025-04-19 17:55:12] 2025-04-19 15:54:54,061 | INFO     | exeerrorcode: 0
[2025-04-19 17:55:12] 2025-04-19 15:54:54,061 | INFO     | exeerrordiag: 
[2025-04-19 17:55:12] 2025-04-19 15:54:54,061 | INFO     | exitcode: 0
[2025-04-19 17:55:12] 2025-04-19 15:54:54,062 | INFO     | exitmsg: OK
[2025-04-19 17:55:12] 2025-04-19 15:54:54,062 | INFO     | cpuconsumptiontime: 14712 s
[2025-04-19 17:55:12] 2025-04-19 15:54:54,062 | INFO     | nevents: 400
[2025-04-19 17:55:12] 2025-04-19 15:54:54,062 | INFO     | neventsw: 0
[2025-04-19 17:55:12] 2025-04-19 15:54:54,062 | INFO     | pid: 1025271
[2025-04-19 17:55:12] 2025-04-19 15:54:54,062 | INFO     | pgrp: 1025271
[2025-04-19 17:55:12] 2025-04-19 15:54:54,062 | INFO     | corecount: 3
[2025-04-19 17:55:12] 2025-04-19 15:54:54,063 | INFO     | event service: False
[2025-04-19 17:55:12] 2025-04-19 15:54:54,063 | INFO     | sizes: {0: 2426776, 6: 2426982, 10: 2427010, 5545: 2453566, 5546: 2462568, 5554: 2462682}
[2025-04-19 17:55:12] 2025-04-19 15:54:54,063 | INFO     | --------------------------------------------------
[2025-04-19 17:55:12] 2025-04-19 15:54:54,063 | INFO     | 
[2025-04-19 17:55:12] 2025-04-19 15:54:54,063 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-04-19 17:55:12] 2025-04-19 15:54:54,076 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-19 17:55:12] 2025-04-19 15:54:54,076 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-19 17:55:12] 2025-04-19 15:54:54,076 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-19 17:55:12] 2025-04-19 15:54:54,077 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-19 17:55:12] 2025-04-19 15:54:54,077 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-19 17:55:12] 2025-04-19 15:54:54,077 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-19 17:55:12] 2025-04-19 15:54:54,077 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-19 17:55:12] 2025-04-19 15:54:54,077 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-19 17:55:12] 2025-04-19 15:54:54,077 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-19 17:55:12] 2025-04-19 15:54:54,077 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-19 17:55:12] 2025-04-19 15:54:54,077 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-19 17:55:12] 2025-04-19 15:54:54,077 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-19 17:55:12] 2025-04-19 15:54:54,077 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-19 17:55:12] 2025-04-19 15:54:54,077 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-19 17:55:12] 2025-04-19 15:54:54,077 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-19 17:55:12] 2025-04-19 15:54:54,077 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-19 17:55:12] 2025-04-19 15:54:54,077 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-19 17:55:12] 2025-04-19 15:54:54,077 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-19 17:55:12] 2025-04-19 15:54:54,077 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-19 17:55:12] 2025-04-19 15:54:54,077 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-19 17:55:12] 2025-04-19 15:54:54,077 | INFO     | job 6603701224 has completed (purged errors)
[2025-04-19 17:55:12] 2025-04-19 15:54:54,077 | INFO     | overall cleanup function is called
[2025-04-19 17:55:12] 2025-04-19 15:54:55,084 | INFO     | --- collectZombieJob: --- 10, [1025271]
[2025-04-19 17:55:12] 2025-04-19 15:54:55,084 | INFO     | zombie collector waiting for pid 1025271
[2025-04-19 17:55:12] 2025-04-19 15:54:55,085 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-19 17:55:12] 2025-04-19 15:54:55,086 | INFO     | collected zombie processes
[2025-04-19 17:55:12] 2025-04-19 15:54:55,086 | INFO     | will attempt to kill all subprocesses of pid=1025271
[2025-04-19 17:55:12] 2025-04-19 15:54:55,126 | INFO     | process IDs to be killed: [1025271] (in reverse order)
[2025-04-19 17:55:12] 2025-04-19 15:54:55,151 | WARNING  | found no corresponding commands to process id(s)
[2025-04-19 17:55:12] 2025-04-19 15:54:55,151 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-19 17:55:12] 2025-04-19 15:54:55,152 | INFO     | did not find any defunct processes belonging to 1025271
[2025-04-19 17:55:12] 2025-04-19 15:54:55,153 | INFO     | did not find any defunct processes belonging to 1025271
[2025-04-19 17:55:12] 2025-04-19 15:54:55,153 | INFO     | ready for new job
[2025-04-19 17:55:12] 2025-04-19 15:54:55,154 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-19 17:55:12] 2025-04-19 15:54:55,154 | INFO     | **************************************
[2025-04-19 17:55:12] 2025-04-19 15:54:55,154 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-19 17:55:12] 2025-04-19 15:54:55,154 | INFO     | **************************************
[2025-04-19 17:55:12] 2025-04-19 15:54:55,154 | INFO     | 
[2025-04-19 17:55:12] 2025-04-19 15:54:55,155 | INFO     | architecture information:
[2025-04-19 17:55:12] 2025-04-19 15:54:55,155 | INFO     | executing command: cat /etc/os-release
[2025-04-19 17:55:12] 2025-04-19 15:54:55,165 | INFO     | cat /etc/os-release:
[2025-04-19 17:55:12] NAME="CentOS Linux"
[2025-04-19 17:55:12] VERSION="7 (Core)"
[2025-04-19 17:55:12] ID="centos"
[2025-04-19 17:55:12] ID_LIKE="rhel fedora"
[2025-04-19 17:55:12] VERSION_ID="7"
[2025-04-19 17:55:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-19 17:55:12] ANSI_COLOR="0;31"
[2025-04-19 17:55:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-19 17:55:12] HOME_URL="https://www.centos.org/"
[2025-04-19 17:55:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-19 17:55:12] 
[2025-04-19 17:55:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-19 17:55:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-19 17:55:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-19 17:55:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-19 17:55:12] 
[2025-04-19 17:55:12] 2025-04-19 15:54:55,165 | INFO     | **************************************
[2025-04-19 17:55:12] 2025-04-19 15:54:55,669 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-04-19 17:55:12] 2025-04-19 15:54:55,682 | INFO     | sufficient remaining disk space (228850663424 B)
[2025-04-19 17:55:12] 2025-04-19 15:54:55,682 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-19 17:55:12] 2025-04-19 15:54:55,682 | INFO     | current server update state: UPDATING_FINAL
[2025-04-19 17:55:12] 2025-04-19 15:54:55,682 | INFO     | update_server=False
[2025-04-19 17:55:12] 2025-04-19 15:54:55,683 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-19 17:55:12] 2025-04-19 15:54:55,683 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-19 17:55:12] 2025-04-19 15:54:55,683 | INFO     | found 0 job(s) in 20 queues
[2025-04-19 17:55:12] 2025-04-19 15:54:55,683 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-19 17:55:12] 2025-04-19 15:54:55,683 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-19 17:55:12] 2025-04-19 15:54:55,683 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-19 17:55:12] 2025-04-19 15:54:56,028 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-04-19 17:55:12] 2025-04-19 15:54:56,028 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-04-19 17:55:12] 2025-04-19 15:54:56,028 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-19 17:55:12] 2025-04-19 15:54:56,028 | INFO     | will abort loop
[2025-04-19 17:55:12] 2025-04-19 15:54:56,359 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-19 17:55:12] 2025-04-19 15:54:56,382 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-19 17:55:12] 2025-04-19 15:54:56,558 | INFO     | all data control threads have been joined
[2025-04-19 17:55:12] 2025-04-19 15:54:56,688 | INFO     | [job] retrieve thread has finished
[2025-04-19 17:55:12] 2025-04-19 15:54:56,689 | INFO     | [job] queue monitor thread has finished
[2025-04-19 17:55:12] 2025-04-19 15:54:56,779 | INFO     | [payload] validate_pre thread has finished
[2025-04-19 17:55:12] 2025-04-19 15:54:56,782 | INFO     | [job] create_data_payload thread has finished
[2025-04-19 17:55:12] 2025-04-19 15:54:56,792 | INFO     | all payload control threads have been joined
[2025-04-19 17:55:12] 2025-04-19 15:54:56,794 | INFO     | [job] validate thread has finished
[2025-04-19 17:55:12] 2025-04-19 15:54:56,818 | INFO     | [data] copytool_in thread has finished
[2025-04-19 17:55:12] 2025-04-19 15:54:57,034 | INFO     | [job] job monitor thread has finished
[2025-04-19 17:55:12] 2025-04-19 15:54:57,172 | INFO     | [payload] failed_post thread has finished
[2025-04-19 17:55:12] 2025-04-19 15:54:57,329 | INFO     | all job control threads have been joined
[2025-04-19 17:55:12] 2025-04-19 15:54:57,564 | INFO     | [data] control thread has finished
[2025-04-19 17:55:12] 2025-04-19 15:54:57,748 | INFO     | [payload] validate_post thread has finished
[2025-04-19 17:55:12] 2025-04-19 15:54:57,798 | INFO     | [payload] control thread has finished
[2025-04-19 17:55:12] 2025-04-19 15:54:58,017 | INFO     | [payload] execute_payloads thread has finished
[2025-04-19 17:55:12] 2025-04-19 15:54:58,335 | INFO     | [job] control thread has finished
[2025-04-19 17:55:12] 2025-04-19 15:54:58,365 | INFO     | [data] copytool_out thread has finished
[2025-04-19 17:55:12] 2025-04-19 15:55:00,389 | INFO     | [data] queue_monitor thread has finished
[2025-04-19 17:55:12] 2025-04-19 15:55:06,087 | INFO     | job.realtimelogging is not enabled
[2025-04-19 17:55:12] 2025-04-19 15:55:07,093 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-19 17:55:12] 2025-04-19 15:55:07,244 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140144766072640)>', '<ExcThread(monitor, started 140144413751040)>']
[2025-04-19 17:55:12] 2025-04-19 15:55:07,747 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-19 17:55:12] 2025-04-19 15:55:07,747 | INFO     | [monitor] control thread has ended
[2025-04-19 17:55:12] 2025-04-19 15:55:12,270 | INFO     | all workflow threads have been joined
[2025-04-19 17:55:12] 2025-04-19 15:55:12,270 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-19 17:55:12] 2025-04-19 15:55:12,271 | INFO     | traces error code: 0
[2025-04-19 17:55:12] 2025-04-19 15:55:12,271 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-19 17:55:12] 2025-04-19 15:55:12,352 [wrapper] ==== pilot stdout END ====
[2025-04-19 17:55:12] 2025-04-19 15:55:12,355 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-19 17:55:12] 2025-04-19 15:55:12,358 [wrapper] pilotpid: 1018820
[2025-04-19 17:55:12] 2025-04-19 15:55:12,361 [wrapper] Pilot exit status: 0
[2025-04-19 17:55:12] 2025-04-19 15:55:12,369 [wrapper] pandaids: 6603701224
[2025-04-19 17:55:12] 2025-04-19 15:55:12,386 [wrapper] cleanup supervisor_pilot 1037330 1018821
[2025-04-19 17:55:12] 2025-04-19 15:55:12,390 [wrapper] Test setup, not cleaning
[2025-04-19 17:55:12] 2025-04-19 15:55:12,393 [wrapper] apfmon messages muted
[2025-04-19 17:55:12] 2025-04-19 15:55:12,395 [wrapper] ==== wrapper stdout END ====
[2025-04-19 17:55:12] 2025-04-19 15:55:12,398 [wrapper] ==== wrapper stderr END ====
[2025-04-19 17:55:12]  *** Error codes and diagnostics ***
[2025-04-19 17:55:12]     "exeErrorCode": 0,
[2025-04-19 17:55:12]     "exeErrorDiag": "",
[2025-04-19 17:55:12]     "pilotErrorCode": 0,
[2025-04-19 17:55:12]     "pilotErrorDiag": "",
[2025-04-19 17:55:12]  *** Listing of results directory ***
[2025-04-19 17:55:12] total 405416
[2025-04-19 17:55:12] -rw-r--r-- 1 boinc boinc    495897 Apr 16 06:41 pilot3.tar.gz
[2025-04-19 17:55:12] -rw-r--r-- 1 boinc boinc      5111 Apr 16 07:27 queuedata.json
[2025-04-19 17:55:12] -rwx------ 1 boinc boinc     37140 Apr 16 07:27 runpilot2-wrapper.sh
[2025-04-19 17:55:12] -rw-r--r-- 1 boinc boinc       100 Apr 19 16:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-19 17:55:12] -rwxr-xr-x 1 boinc boinc      7986 Apr 19 16:21 run_atlas
[2025-04-19 17:55:12] -rw-r--r-- 1 boinc boinc       105 Apr 19 16:21 job.xml
[2025-04-19 17:55:12] -rw-r--r-- 2 boinc boinc 222315823 Apr 19 16:21 EVNT.44075481._001429.pool.root.1
[2025-04-19 17:55:12] -rw-r--r-- 1 boinc boinc      6680 Apr 19 16:21 init_data.xml
[2025-04-19 17:55:12] drwxrwx--x 2 boinc boinc      4096 Apr 19 16:21 shared
[2025-04-19 17:55:12] -rw-r--r-- 2 boinc boinc    508897 Apr 19 16:21 input.tar.gz
[2025-04-19 17:55:12] -rw-r--r-- 2 boinc boinc     17569 Apr 19 16:21 start_atlas.sh
[2025-04-19 17:55:12] -rw-r--r-- 1 boinc boinc         0 Apr 19 16:21 boinc_lockfile
[2025-04-19 17:55:12] -rw-r--r-- 1 boinc boinc      2578 Apr 19 16:21 pandaJob.out
[2025-04-19 17:55:12] -rw------- 1 boinc boinc       424 Apr 19 16:21 setup.sh.local
[2025-04-19 17:55:12] -rw------- 1 boinc boinc    991300 Apr 19 16:22 agis_schedconf.cvmfs.json
[2025-04-19 17:55:12] -rw------- 1 boinc boinc   1618536 Apr 19 16:22 agis_ddmendpoints.agis.ALL.json
[2025-04-19 17:55:12] drwx------ 4 boinc boinc      4096 Apr 19 16:22 pilot3
[2025-04-19 17:55:12] -rw------- 1 boinc boinc 187423276 Apr 19 17:54 HITS.44075483._036381.pool.root.1
[2025-04-19 17:55:12] -rw------- 1 boinc boinc        95 Apr 19 17:54 pilot_heartbeat.json
[2025-04-19 17:55:12] -rw-r--r-- 1 boinc boinc       529 Apr 19 17:54 boinc_task_state.xml
[2025-04-19 17:55:12] -rw------- 1 boinc boinc      1032 Apr 19 17:54 memory_monitor_summary.json
[2025-04-19 17:55:12] -rw------- 1 boinc boinc    232212 Apr 19 17:54 log.44075483._036381.job.log.tgz.1
[2025-04-19 17:55:12] -rw------- 1 boinc boinc      7657 Apr 19 17:54 heartbeat.json
[2025-04-19 17:55:12] -rw-r--r-- 1 boinc boinc        27 Apr 19 17:55 wrapper_checkpoint.txt
[2025-04-19 17:55:12] -rw-r--r-- 1 boinc boinc      8192 Apr 19 17:55 boinc_mmap_file
[2025-04-19 17:55:12] -rw------- 1 boinc boinc      4738 Apr 19 17:55 pilotlog.txt
[2025-04-19 17:55:12] -rw------- 1 boinc boinc    536464 Apr 19 17:55 log.44075483._036381.job.log.1
[2025-04-19 17:55:12] -rw------- 1 boinc boinc       357 Apr 19 17:55 output.list
[2025-04-19 17:55:12] -rw-r--r-- 1 boinc boinc       620 Apr 19 17:55 runtime_log
[2025-04-19 17:55:12] -rw------- 1 boinc boinc    788480 Apr 19 17:55 result.tar.gz
[2025-04-19 17:55:12] -rw-r--r-- 1 boinc boinc     11099 Apr 19 17:55 runtime_log.err
[2025-04-19 17:55:12] -rw------- 1 boinc boinc       658 Apr 19 17:55 RfqMDmWUAP7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmZeZLDmWgJx7m.diag
[2025-04-19 17:55:12] -rw-r--r-- 1 boinc boinc     21802 Apr 19 17:55 stderr.txt
[2025-04-19 17:55:12] HITS file was successfully produced:
[2025-04-19 17:55:12] -rw------- 1 boinc boinc 187423276 Apr 19 17:54 shared/HITS.pool.root.1
[2025-04-19 17:55:12]  *** Contents of shared directory: ***
[2025-04-19 17:55:12] total 401440
[2025-04-19 17:55:12] -rw-r--r-- 2 boinc boinc 222315823 Apr 19 16:21 ATLAS.root_0
[2025-04-19 17:55:12] -rw-r--r-- 2 boinc boinc    508897 Apr 19 16:21 input.tar.gz
[2025-04-19 17:55:12] -rw-r--r-- 2 boinc boinc     17569 Apr 19 16:21 start_atlas.sh
[2025-04-19 17:55:12] -rw------- 1 boinc boinc 187423276 Apr 19 17:54 HITS.pool.root.1
[2025-04-19 17:55:12] -rw------- 1 boinc boinc    788480 Apr 19 17:55 result.tar.gz
17:55:13 (1015158): run_atlas exited; CPU time 14741.238454
17:55:13 (1015158): called boinc_finish(0)

</stderr_txt>
]]>

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