Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-19 05:21:00 (2836): Detected: vboxwrapper 26206
2025-04-19 05:21:00 (2836): Detected: BOINC client v8.0.2
2025-04-19 05:21:00 (2836): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-04-19 05:21:00 (2836): Successfully copied 'init_data.xml' to the shared directory.
2025-04-19 05:21:01 (2836): Create VM. (boinc_a3bf6976662b52fc, slot#0)
2025-04-19 05:21:01 (2836): Setting Memory Size for VM. (4800MB)
2025-04-19 05:21:02 (2836): Setting CPU Count for VM. (8)
2025-04-19 05:21:02 (2836): Setting Chipset Options for VM.
2025-04-19 05:21:02 (2836): Setting Graphics Controller Options for VM.
2025-04-19 05:21:02 (2836): Setting Boot Options for VM.
2025-04-19 05:21:03 (2836): Setting Network Configuration for NAT.
2025-04-19 05:21:03 (2836): Enabling VM Network Access.
2025-04-19 05:21:03 (2836): Disabling USB Support for VM.
2025-04-19 05:21:03 (2836): Disabling COM Port Support for VM.
2025-04-19 05:21:04 (2836): Disabling LPT Port Support for VM.
2025-04-19 05:21:04 (2836): Disabling Audio Support for VM.
2025-04-19 05:21:04 (2836): Disabling Clipboard Support for VM.
2025-04-19 05:21:05 (2836): Disabling Drag and Drop Support for VM.
2025-04-19 05:21:05 (2836): Adding storage controller(s) to VM.
2025-04-19 05:21:05 (2836): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-19 05:21:06 (2836): Adding VirtualBox Guest Additions to VM.
2025-04-19 05:21:06 (2836): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-19 05:21:06 (2836): forwarding host port 56972 to guest port 80
2025-04-19 05:21:06 (2836): Enabling remote desktop for VM.
2025-04-19 05:21:07 (2836): Required extension pack not installed, remote desktop not enabled.
2025-04-19 05:21:07 (2836): Enabling shared directory for VM.
2025-04-19 05:21:07 (2836): Starting VM using VBoxManage interface. (boinc_a3bf6976662b52fc, slot#0)
2025-04-19 05:21:15 (2836): Successfully started VM. (PID = '6228')
2025-04-19 05:21:15 (2836): Reporting VM Process ID to BOINC.
2025-04-19 05:21:15 (2836): Guest Log: BIOS: VirtualBox 7.1.6
2025-04-19 05:21:15 (2836): Guest Log: CPUID EDX: 0x178bfbff
2025-04-19 05:21:15 (2836): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-19 05:21:15 (2836): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-19 05:21:15 (2836): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-19 05:21:15 (2836): Detected: Web Application Enabled (http://localhost:56972)
2025-04-19 05:21:15 (2836): Preference change detected
2025-04-19 05:21:15 (2836): Setting CPU throttle for VM. (40%)
2025-04-19 05:21:15 (2836): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-19 05:21:17 (2836): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-19 05:21:17 (2836): Guest Log: BIOS: Booting from Hard Disk...
2025-04-19 05:21:23 (2836): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-19 05:21:23 (2836): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-19 05:21:23 (2836): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-19 05:21:23 (2836): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-19 05:21:23 (2836): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-19 05:21:23 (2836): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-19 05:21:23 (2836): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-19 05:21:23 (2836): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-19 05:21:23 (2836): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-19 05:21:23 (2836): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-19 05:21:23 (2836): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-19 05:21:23 (2836): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-19 05:21:23 (2836): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-19 05:21:23 (2836): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-19 05:21:23 (2836): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-19 05:21:23 (2836): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-19 05:21:23 (2836): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-19 05:21:23 (2836): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-19 05:21:23 (2836): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-19 05:21:23 (2836): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-19 05:21:23 (2836): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-19 05:21:23 (2836): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-19 05:21:23 (2836): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-19 05:21:23 (2836): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-19 05:21:23 (2836): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-19 05:21:23 (2836): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-19 05:21:23 (2836): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-19 05:21:23 (2836): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-19 05:21:23 (2836): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-19 05:21:23 (2836): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-19 05:21:23 (2836): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-19 05:21:23 (2836): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-19 05:21:38 (2836): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-19 05:21:38 (2836): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-19 05:22:02 (2836): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-19 05:22:02 (2836): Guest Log: 00:00:00.000427 main     Log opened 2025-04-19T05:22:00.278252000Z
2025-04-19 05:22:02 (2836): Guest Log: 00:00:00.000871 main     OS Product: Linux
2025-04-19 05:22:02 (2836): Guest Log: 00:00:00.001001 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-19 05:22:02 (2836): Guest Log: 00:00:00.001113 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-19 05:22:02 (2836): Guest Log: 00:00:00.001222 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-19 05:22:02 (2836): Guest Log: 00:00:00.001225 main     Process ID: 1380
2025-04-19 05:22:02 (2836): Guest Log: 00:00:00.001227 main     Package type: LINUX_64BITS_GENERIC
2025-04-19 05:22:02 (2836): Guest Log: 00:00:00.004860 main     5.2.32 r132073 started. Verbose level = 0
2025-04-19 05:22:03 (2836): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-19 05:22:03 (2836): Guest Log: [INFO] Mounting shared directory
2025-04-19 05:22:03 (2836): Guest Log: [INFO] Checking for init_data.xml
2025-04-19 05:22:12 (2836): Guest Log: 00:00:10.012625 timesync vgsvcTimeSyncWorker: Radical guest time change: -32 388 414 773 000ns (GuestNow=1 745 007 731 872 235 000 ns GuestLast=1 745 040 120 287 008 000 ns fSetTimeLastLoop=true )
2025-04-19 05:22:17 (2836): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-19 05:22:17 (2836): Guest Log: [INFO] Detected branch: prod
2025-04-19 05:22:17 (2836): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-19 05:22:17 (2836): Guest Log: Copying input files
2025-04-19 05:22:24 (2836): Guest Log: Copied input files into RunAtlas.
2025-04-19 05:22:25 (2836): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-19 05:22:25 (2836): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-19 05:22:25 (2836): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-19 05:22:25 (2836): Guest Log: Further information can be found at the LHC@home message board.
2025-04-19 05:22:39 (2836): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-19 05:22:40 (2836): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-19 05:22:40 (2836): Guest Log: 2.6.3.0 1680 0 30028 145014 3 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-04-19 05:22:42 (2836): Guest Log: copied the webapp to /var/www
2025-04-19 05:22:43 (2836): Guest Log: ATHENA_PROC_NUMBER=8
2025-04-19 05:22:43 (2836): Guest Log: ATHENA_CORE_NUMBER=8
2025-04-19 05:22:43 (2836): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-19 05:22:43 (2836): Guest Log:  *** Starting ATLAS job. (PandaID=6606292952 taskID=44075483) ***
2025-04-19 07:01:20 (2836): Status Report: Elapsed Time: '6000.000000'
2025-04-19 07:01:20 (2836): Status Report: CPU Time: '11821.515625'
2025-04-19 08:41:26 (2836): Status Report: Elapsed Time: '12000.000000'
2025-04-19 08:41:26 (2836): Status Report: CPU Time: '33165.890625'
2025-04-19 09:33:02 (2836): VM state change detected. (old = 'running', new = 'paused')
2025-04-19 09:33:22 (2836): VM state change detected. (old = 'paused', new = 'running')
2025-04-19 10:21:53 (2836): Status Report: Elapsed Time: '18000.000000'
2025-04-19 10:21:53 (2836): Status Report: CPU Time: '54581.500000'
2025-04-19 10:57:50 (2836): VM state change detected. (old = 'running', new = 'paused')
2025-04-19 11:00:50 (2836): VM state change detected. (old = 'paused', new = 'running')
2025-04-19 11:02:00 (2836): VM state change detected. (old = 'running', new = 'paused')
2025-04-19 11:02:20 (2836): VM state change detected. (old = 'paused', new = 'running')
2025-04-19 11:02:40 (2836): VM state change detected. (old = 'running', new = 'paused')
2025-04-19 11:03:00 (2836): VM state change detected. (old = 'paused', new = 'running')
2025-04-19 11:03:20 (2836): VM state change detected. (old = 'running', new = 'paused')
2025-04-19 11:03:40 (2836): VM state change detected. (old = 'paused', new = 'running')
2025-04-19 12:06:03 (2836): Status Report: Elapsed Time: '24000.000000'
2025-04-19 12:06:03 (2836): Status Report: CPU Time: '75920.718750'
2025-04-19 13:46:09 (2836): Status Report: Elapsed Time: '30000.000000'
2025-04-19 13:46:09 (2836): Status Report: CPU Time: '96072.453125'
2025-04-19 13:50:58 (2836): Guest Log:  *** Job finished ***
2025-04-19 13:50:58 (2836): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-19 13:50:58 (2836): Guest Log: 2025-04-19 04:46:31,000 | INFO     | [data] queue_monitor thread has finished
2025-04-19 13:50:58 (2836): Guest Log: 2025-04-19 04:46:34,272 | INFO     | job.realtimelogging is not enabled
2025-04-19 13:50:58 (2836): Guest Log: 2025-04-19 04:46:35,277 | INFO     | [payload] run_realtimelog thread has finished
2025-04-19 13:50:58 (2836): Guest Log: 2025-04-19 04:46:36,433 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140107752814400)>', '<ExcThread(monitor, started 140107294156544)>']
2025-04-19 13:50:58 (2836): Guest Log: 2025-04-19 04:46:37,030 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-19 13:50:58 (2836): Guest Log: 2025-04-19 04:46:37,031 | INFO     | [monitor] control thread has ended
2025-04-19 13:50:58 (2836): Guest Log: 2025-04-19 04:46:41,438 | INFO     | all workflow threads have been joined
2025-04-19 13:50:58 (2836): Guest Log: 2025-04-19 04:46:41,439 | INFO     | end of generic workflow (traces error code: 0)
2025-04-19 13:50:58 (2836): Guest Log: 2025-04-19 04:46:41,440 | INFO     | traces error code: 0
2025-04-19 13:50:58 (2836): Guest Log: 2025-04-19 04:46:41,441 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-19 13:50:58 (2836): Guest Log: 2025-04-19 04:46:41,804 [wrapper] ==== pilot stdout END ====
2025-04-19 13:50:58 (2836): Guest Log: 2025-04-19 04:46:41,812 [wrapper] ==== wrapper stdout RESUME ====
2025-04-19 13:50:58 (2836): Guest Log: 2025-04-19 04:46:41,819 [wrapper] pilotpid: 6048
2025-04-19 13:50:58 (2836): Guest Log: 2025-04-19 04:46:41,827 [wrapper] Pilot exit status: 0
2025-04-19 13:50:58 (2836): Guest Log: 2025-04-19 04:46:42,202 [wrapper] pandaids: 6606292952
2025-04-19 13:50:58 (2836): Guest Log: 2025-04-19 04:46:42,339 [wrapper] cleanup supervisor_pilot 21815 6049
2025-04-19 13:50:58 (2836): Guest Log: 2025-04-19 04:46:42,352 [wrapper] Test setup, not cleaning
2025-04-19 13:50:58 (2836): Guest Log: 2025-04-19 04:46:42,366 [wrapper] apfmon messages muted
2025-04-19 13:50:58 (2836): Guest Log: 2025-04-19 04:46:42,378 [wrapper] ==== wrapper stdout END ====
2025-04-19 13:50:58 (2836): Guest Log: 2025-04-19 04:46:42,389 [wrapper] ==== wrapper stderr END ====
2025-04-19 13:50:58 (2836): Guest Log:  *** Error codes and diagnostics ***
2025-04-19 13:50:58 (2836): Guest Log:     "exeErrorCode": 0,
2025-04-19 13:50:58 (2836): Guest Log:     "exeErrorDiag": "",
2025-04-19 13:50:58 (2836): Guest Log:     "pilotErrorCode": 0,
2025-04-19 13:50:58 (2836): Guest Log:     "pilotErrorDiag": "",
2025-04-19 13:50:58 (2836): Guest Log:  *** Listing of results directory ***
2025-04-19 13:50:58 (2836): Guest Log: total 193328
2025-04-19 13:50:58 (2836): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 18 08:17 pilot3.tar.gz
2025-04-19 13:50:58 (2836): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 18 08:30 queuedata.json
2025-04-19 13:50:58 (2836): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 18 08:30 runpilot2-wrapper.sh
2025-04-19 13:50:58 (2836): Guest Log: -rwxr-xr-x. 1 atlas atlas      6127 Apr 18 20:22 init_data.xml
2025-04-19 13:50:58 (2836): Guest Log: -rwxr-xr-x. 1 atlas atlas    508897 Apr 18 20:22 input.tar.gz
2025-04-19 13:50:58 (2836): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 18 20:22 start_atlas.sh
2025-04-19 13:50:58 (2836): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 18 20:22 EVNT.44075481._002596.pool.root.1 -> /data/./ATLAS.root_0
2025-04-19 13:50:58 (2836): Guest Log: -rw-r--r--. 1 atlas atlas      2578 Apr 18 20:22 pandaJob.out
2025-04-19 13:50:58 (2836): Guest Log: -rw-------. 1 atlas atlas       424 Apr 18 20:22 setup.sh.local
2025-04-19 13:50:58 (2836): Guest Log: -rw-------. 1 atlas atlas    991292 Apr 18 20:25 agis_schedconf.cvmfs.json
2025-04-19 13:50:58 (2836): Guest Log: drwx------. 4 atlas atlas      4096 Apr 18 20:25 pilot3
2025-04-19 13:50:58 (2836): Guest Log: -rw-------. 1 atlas atlas 190030686 Apr 19 04:43 HITS.44075483._066811.pool.root.1
2025-04-19 13:50:58 (2836): Guest Log: -rw-------. 1 atlas atlas        95 Apr 19 04:45 pilot_heartbeat.json
2025-04-19 13:50:58 (2836): Guest Log: -rw-------. 1 atlas atlas      1033 Apr 19 04:45 memory_monitor_summary.json
2025-04-19 13:50:58 (2836): Guest Log: -rw-------. 1 atlas atlas   1618536 Apr 19 04:45 agis_ddmendpoints.agis.ALL.json
2025-04-19 13:50:58 (2836): Guest Log: -rw-------. 1 atlas atlas    456593 Apr 19 04:45 log.44075483._066811.job.log.tgz.1
2025-04-19 13:50:58 (2836): Guest Log: -rw-------. 1 atlas atlas      7700 Apr 19 04:46 heartbeat.json
2025-04-19 13:50:58 (2836): Guest Log: -rw-------. 1 atlas atlas      4608 Apr 19 04:46 pilotlog.txt
2025-04-19 13:50:58 (2836): Guest Log: -rw-------. 1 atlas atlas   1611302 Apr 19 04:46 log.44075483._066811.job.log.1
2025-04-19 13:50:59 (2836): Guest Log: -rw-------. 1 atlas atlas       357 Apr 19 04:46 output.list
2025-04-19 13:50:59 (2836): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 19 04:46 runtime_log
2025-04-19 13:50:59 (2836): Guest Log: -rw-------. 1 atlas atlas   2088960 Apr 19 04:46 result.tar.gz
2025-04-19 13:50:59 (2836): Guest Log: -rw-r--r--. 1 atlas atlas     10932 Apr 19 04:46 runtime_log.err
2025-04-19 13:50:59 (2836): Guest Log: -rw-------. 1 atlas atlas       660 Apr 19 04:46 K0TNDmZIwP7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmsw4KDmd5Mz5m.diag
2025-04-19 13:50:59 (2836): Guest Log: Looking for outputfile HITS.44075483._066811.pool.root.1
2025-04-19 13:50:59 (2836): Guest Log: HITS file was successfully produced
2025-04-19 13:50:59 (2836): Guest Log: -rw-------. 1 atlas atlas 190030686 Apr 19 04:43 /home/atlas/RunAtlas/HITS.44075483._066811.pool.root.1
2025-04-19 13:51:03 (2836): Guest Log: Successfully finished the ATLAS job!
2025-04-19 13:51:03 (2836): Guest Log: Copying the results back to the shared directory!
2025-04-19 13:51:04 (2836): Guest Log:  *** Contents of shared directory: ***
2025-04-19 13:51:04 (2836): Guest Log: total 407124
2025-04-19 13:51:04 (2836): Guest Log: -rwxrwxrwx. 1 root root 224229892 Apr 18 20:21 ATLAS.root_0
2025-04-19 13:51:04 (2836): Guest Log: -rwxrwxrwx. 1 root root 190030686 Apr 19  2025 HITS.pool.root.1
2025-04-19 13:51:04 (2836): Guest Log: -rwxrwxrwx. 1 root root      6127 Apr 18 20:21 init_data.xml
2025-04-19 13:51:04 (2836): Guest Log: -rwxrwxrwx. 1 root root    508897 Apr 18 11:49 input.tar.gz
2025-04-19 13:51:04 (2836): Guest Log: -rwxrwxrwx. 1 root root   2088960 Apr 19  2025 result.tar.gz
2025-04-19 13:51:04 (2836): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 18 11:49 start_atlas.sh
2025-04-19 13:51:04 (2836): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-19 13:51:04 (2836): VM Completion File Detected.
2025-04-19 13:51:04 (2836): Powering off VM.
2025-04-19 13:51:06 (2836): Successfully stopped VM.
2025-04-19 13:51:06 (2836): Deregistering VM. (boinc_a3bf6976662b52fc, slot#0)
2025-04-19 13:51:06 (2836): Removing network bandwidth throttle group from VM.
2025-04-19 13:51:06 (2836): Removing VM from VirtualBox.
13:51:11 (2836): called boinc_finish(0)

</stderr_txt>
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