Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:40:05 (38649): wrapper (7.7.26015): starting
05:40:05 (38649): wrapper: running run_atlas (--nthreads 10)
[2025-04-18 05:40:05] Arguments: --nthreads 10
[2025-04-18 05:40:05] Threads: 10
[2025-04-18 05:40:05] Checking for CVMFS
[2025-04-18 05:40:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-18 05:40:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-18 05:40:06] Running cvmfs_config stat atlas.cern.ch
[2025-04-18 05:40:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-18 05:40:07] 2.11.2.0 4919 204944 370456 144997 3 285 10912757 18432001 9945 130560 0 37674916 99.400 60365531 45527 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-18 05:40:07] CVMFS is ok
[2025-04-18 05:40:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-18 05:40:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-18 05:40:07] Further information can be found at the LHC@home message board.
[2025-04-18 05:40:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-18 05:40:07] Checking for apptainer binary...
[2025-04-18 05:40:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-18 05:40:07] Running /usr/bin/apptainer --version
[2025-04-18 05:40:07] apptainer version 1.3.2-1.el7
[2025-04-18 05:40:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-18 05:40:17] c-211-32.aglt2.org
[2025-04-18 05:40:17] apptainer works
[2025-04-18 05:40:17] Set ATHENA_PROC_NUMBER=10
[2025-04-18 05:40:17] Set ATHENA_CORE_NUMBER=10
[2025-04-18 05:40:17] Starting ATLAS job with PandaID=6606213032
[2025-04-18 05:40:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-18 14:15:21]  *** The last 200 lines of the pilot log: ***
[2025-04-18 14:15:21] 2025-04-18 18:15:06,215 | INFO     | sum of deviations: 281947137101.9999
[2025-04-18 14:15:21] 2025-04-18 18:15:06,216 | INFO     | mean x: 1744985060.0934958
[2025-04-18 14:15:21] 2025-04-18 18:15:06,216 | INFO     | mean y: 2539871.0
[2025-04-18 14:15:21] 2025-04-18 18:15:06,216 | INFO     | -- intersect: -13320322925.561579
[2025-04-18 14:15:21] 2025-04-18 18:15:06,216 | INFO     | intersect: -13320322925.561579
[2025-04-18 14:15:21] 2025-04-18 18:15:06,217 | INFO     | chi2: 1.985571941335315
[2025-04-18 14:15:21] 2025-04-18 18:15:06,217 | INFO     | current chi2=1.985571941335315 (change=47.60239759501266 %)
[2025-04-18 14:15:21] 2025-04-18 18:15:06,218 | INFO     | sum of square deviations: 35813930874.9199
[2025-04-18 14:15:21] 2025-04-18 18:15:06,226 | INFO     | sum of deviations: 174391605452.92828
[2025-04-18 14:15:21] 2025-04-18 18:15:06,226 | INFO     | mean x: 1744985212.5995893
[2025-04-18 14:15:21] 2025-04-18 18:15:06,227 | INFO     | mean y: 2554587.640657084
[2025-04-18 14:15:21] 2025-04-18 18:15:06,227 | INFO     | -- intersect: -8494439885.813449
[2025-04-18 14:15:21] 2025-04-18 18:15:06,227 | INFO     | intersect: -8494439885.813449
[2025-04-18 14:15:21] 2025-04-18 18:15:06,228 | INFO     | chi2: 0.4355004650648287
[2025-04-18 14:15:21] 2025-04-18 18:15:06,228 | INFO     | current chi2=0.4355004650648287 (change=78.06674963527382 %)
[2025-04-18 14:15:21] 2025-04-18 18:15:06,229 | INFO     | sum of square deviations: 34721998085.603676
[2025-04-18 14:15:21] 2025-04-18 18:15:06,237 | INFO     | sum of deviations: 126806078978.82582
[2025-04-18 14:15:21] 2025-04-18 18:15:06,237 | INFO     | mean x: 1744985365.1058092
[2025-04-18 14:15:21] 2025-04-18 18:15:06,237 | INFO     | mean y: 2561228.062240664
[2025-04-18 14:15:21] 2025-04-18 18:15:06,237 | INFO     | -- intersect: -6370192767.2283325
[2025-04-18 14:15:21] 2025-04-18 18:15:06,238 | INFO     | intersect: -6370192767.2283325
[2025-04-18 14:15:21] 2025-04-18 18:15:06,238 | INFO     | chi2: 0.15296724975271303
[2025-04-18 14:15:21] 2025-04-18 18:15:06,239 | INFO     | current chi2=0.15296724975271303 (change=64.87552551064617 %)
[2025-04-18 14:15:21] 2025-04-18 18:15:06,239 | INFO     | sum of square deviations: 33652484321.24957
[2025-04-18 14:15:21] 2025-04-18 18:15:06,247 | INFO     | sum of deviations: 97983154958.03575
[2025-04-18 14:15:21] 2025-04-18 18:15:06,247 | INFO     | mean x: 1744985517.6121593
[2025-04-18 14:15:21] 2025-04-18 18:15:06,247 | INFO     | mean y: 2565340.3731656186
[2025-04-18 14:15:21] 2025-04-18 18:15:06,248 | INFO     | -- intersect: -5078164650.896962
[2025-04-18 14:15:21] 2025-04-18 18:15:06,248 | INFO     | intersect: -5078164650.896962
[2025-04-18 14:15:21] 2025-04-18 18:15:06,249 | INFO     | chi2: 0.054898974626481106
[2025-04-18 14:15:21] 2025-04-18 18:15:06,249 | INFO     | current chi2=0.054898974626481106 (change=64.11063497890507 %)
[2025-04-18 14:15:21] 2025-04-18 18:15:06,250 | INFO     | sum of square deviations: 32605302381.489555
[2025-04-18 14:15:21] 2025-04-18 18:15:06,257 | INFO     | sum of deviations: 84543046413.31566
[2025-04-18 14:15:21] 2025-04-18 18:15:06,257 | INFO     | mean x: 1744985670.1080508
[2025-04-18 14:15:21] 2025-04-18 18:15:06,257 | INFO     | mean y: 2567289.680084746
[2025-04-18 14:15:21] 2025-04-18 18:15:06,258 | INFO     | -- intersect: -4522046614.292425
[2025-04-18 14:15:21] 2025-04-18 18:15:06,258 | INFO     | intersect: -4522046614.292425
[2025-04-18 14:15:21] 2025-04-18 18:15:06,259 | INFO     | chi2: 0.022028300580203202
[2025-04-18 14:15:21] 2025-04-18 18:15:06,259 | INFO     | current chi2=0.022028300580203202 (change=59.87484150646119 %)
[2025-04-18 14:15:21] 2025-04-18 18:15:06,260 | INFO     | sum of square deviations: 31580016759.289215
[2025-04-18 14:15:21] 2025-04-18 18:15:06,267 | INFO     | sum of deviations: 76935771995.96152
[2025-04-18 14:15:21] 2025-04-18 18:15:06,267 | INFO     | mean x: 1744985822.6081371
[2025-04-18 14:15:21] 2025-04-18 18:15:06,267 | INFO     | mean y: 2568421.852248394
[2025-04-18 14:15:21] 2025-04-18 18:15:06,267 | INFO     | -- intersect: -4248595610.3794637
[2025-04-18 14:15:21] 2025-04-18 18:15:06,268 | INFO     | intersect: -4248595610.3794637
[2025-04-18 14:15:21] 2025-04-18 18:15:06,268 | INFO     | chi2: 0.01793334101011529
[2025-04-18 14:15:21] 2025-04-18 18:15:06,269 | INFO     | current chi2=0.01793334101011529 (change=18.589539193813465 %)
[2025-04-18 14:15:21] 2025-04-18 18:15:06,269 | INFO     | left removable region: 70
[2025-04-18 14:15:21] 2025-04-18 18:15:06,270 | INFO     | sum of square deviations: 23971307519.053932
[2025-04-18 14:15:21] 2025-04-18 18:15:06,276 | INFO     | sum of deviations: 40464207946.7512
[2025-04-18 14:15:21] 2025-04-18 18:15:06,276 | INFO     | mean x: 1744986707.096244
[2025-04-18 14:15:21] 2025-04-18 18:15:06,276 | INFO     | mean y: 2573908.469483568
[2025-04-18 14:15:21] 2025-04-18 18:15:06,277 | INFO     | -- intersect: -2943010303.995109
[2025-04-18 14:15:21] 2025-04-18 18:15:06,277 | INFO     | intersect: -2943010303.995109
[2025-04-18 14:15:21] 2025-04-18 18:15:06,278 | INFO     | chi2: 0.00576474901357126
[2025-04-18 14:15:21] 2025-04-18 18:15:06,278 | INFO     | -- intersect: -2943010303.995109
[2025-04-18 14:15:21] 2025-04-18 18:15:06,278 | INFO     | current memory leak: 1.69 B/s (using 426 data points, chi2=0.01)
[2025-04-18 14:15:21] 2025-04-18 18:15:06,279 | INFO     | ..............................
[2025-04-18 14:15:21] 2025-04-18 18:15:06,280 | INFO     | . Timing measurements:
[2025-04-18 14:15:21] 2025-04-18 18:15:06,280 | INFO     | . get job = 0 s
[2025-04-18 14:15:21] 2025-04-18 18:15:06,280 | INFO     | . initial setup = 6 s
[2025-04-18 14:15:21] 2025-04-18 18:15:06,280 | INFO     | . payload setup = 48 s
[2025-04-18 14:15:21] 2025-04-18 18:15:06,280 | INFO     | . stage-in = 0 s
[2025-04-18 14:15:21] 2025-04-18 18:15:06,280 | INFO     | . payload execution = 30668 s
[2025-04-18 14:15:21] 2025-04-18 18:15:06,281 | INFO     | . stage-out = 2 s
[2025-04-18 14:15:21] 2025-04-18 18:15:06,281 | INFO     | . log creation = 0 s
[2025-04-18 14:15:21] 2025-04-18 18:15:06,281 | INFO     | ..............................
[2025-04-18 14:15:21] 2025-04-18 18:15:06,472 | INFO     | 
[2025-04-18 14:15:21] 2025-04-18 18:15:06,472 | INFO     | job summary report
[2025-04-18 14:15:21] 2025-04-18 18:15:06,473 | INFO     | --------------------------------------------------
[2025-04-18 14:15:21] 2025-04-18 18:15:06,473 | INFO     | PanDA job id: 6606213032
[2025-04-18 14:15:21] 2025-04-18 18:15:06,473 | INFO     | task id: 44075483
[2025-04-18 14:15:21] 2025-04-18 18:15:06,473 | INFO     | errors: (none)
[2025-04-18 14:15:21] 2025-04-18 18:15:06,473 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-18 14:15:21] 2025-04-18 18:15:06,473 | INFO     | pilot state: finished 
[2025-04-18 14:15:21] 2025-04-18 18:15:06,473 | INFO     | transexitcode: 0
[2025-04-18 14:15:21] 2025-04-18 18:15:06,473 | INFO     | exeerrorcode: 0
[2025-04-18 14:15:21] 2025-04-18 18:15:06,473 | INFO     | exeerrordiag: 
[2025-04-18 14:15:21] 2025-04-18 18:15:06,473 | INFO     | exitcode: 0
[2025-04-18 14:15:21] 2025-04-18 18:15:06,473 | INFO     | exitmsg: OK
[2025-04-18 14:15:21] 2025-04-18 18:15:06,474 | INFO     | cpuconsumptiontime: 78464 s
[2025-04-18 14:15:21] 2025-04-18 18:15:06,474 | INFO     | nevents: 400
[2025-04-18 14:15:21] 2025-04-18 18:15:06,474 | INFO     | neventsw: 0
[2025-04-18 14:15:21] 2025-04-18 18:15:06,474 | INFO     | pid: 906
[2025-04-18 14:15:21] 2025-04-18 18:15:06,474 | INFO     | pgrp: 906
[2025-04-18 14:15:21] 2025-04-18 18:15:06,474 | INFO     | corecount: 10
[2025-04-18 14:15:21] 2025-04-18 18:15:06,474 | INFO     | event service: False
[2025-04-18 14:15:21] 2025-04-18 18:15:06,474 | INFO     | sizes: {0: 2425996, 1: 2426681, 2: 2426681, 3: 2426908, 14: 2426908, 26: 2426936, 36: 2427092, 40: 2427326, 48: 2427354, 30720: 2464773, 30724: 2474050, 30739: 247
[2025-04-18 14:15:21] 2025-04-18 18:15:06,474 | INFO     | --------------------------------------------------
[2025-04-18 14:15:21] 2025-04-18 18:15:06,475 | INFO     | 
[2025-04-18 14:15:21] 2025-04-18 18:15:06,475 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-04-18 14:15:21] 2025-04-18 18:15:06,497 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-18 14:15:21] 2025-04-18 18:15:06,497 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-18 14:15:21] 2025-04-18 18:15:06,497 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-18 14:15:21] 2025-04-18 18:15:06,497 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-18 14:15:21] 2025-04-18 18:15:06,497 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-18 14:15:21] 2025-04-18 18:15:06,498 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-18 14:15:21] 2025-04-18 18:15:06,498 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-18 14:15:21] 2025-04-18 18:15:06,498 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-18 14:15:21] 2025-04-18 18:15:06,498 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-18 14:15:21] 2025-04-18 18:15:06,498 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-18 14:15:21] 2025-04-18 18:15:06,498 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-18 14:15:21] 2025-04-18 18:15:06,498 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-18 14:15:21] 2025-04-18 18:15:06,498 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-18 14:15:21] 2025-04-18 18:15:06,498 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-18 14:15:21] 2025-04-18 18:15:06,498 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-18 14:15:21] 2025-04-18 18:15:06,499 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-18 14:15:21] 2025-04-18 18:15:06,499 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-18 14:15:21] 2025-04-18 18:15:06,499 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-18 14:15:21] 2025-04-18 18:15:06,499 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-18 14:15:21] 2025-04-18 18:15:06,499 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-18 14:15:21] 2025-04-18 18:15:06,499 | INFO     | job 6606213032 has completed (purged errors)
[2025-04-18 14:15:21] 2025-04-18 18:15:06,499 | INFO     | overall cleanup function is called
[2025-04-18 14:15:21] 2025-04-18 18:15:07,508 | INFO     | --- collectZombieJob: --- 10, [906]
[2025-04-18 14:15:21] 2025-04-18 18:15:07,508 | INFO     | zombie collector waiting for pid 906
[2025-04-18 14:15:21] 2025-04-18 18:15:07,508 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-18 14:15:21] 2025-04-18 18:15:07,508 | INFO     | collected zombie processes
[2025-04-18 14:15:21] 2025-04-18 18:15:07,508 | INFO     | will attempt to kill all subprocesses of pid=906
[2025-04-18 14:15:21] 2025-04-18 18:15:07,857 | INFO     | process IDs to be killed: [906] (in reverse order)
[2025-04-18 14:15:21] 2025-04-18 18:15:07,955 | WARNING  | found no corresponding commands to process id(s)
[2025-04-18 14:15:21] 2025-04-18 18:15:07,956 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-18 14:15:21] 2025-04-18 18:15:07,975 | INFO     | did not find any defunct processes belonging to 906
[2025-04-18 14:15:21] 2025-04-18 18:15:07,986 | INFO     | did not find any defunct processes belonging to 906
[2025-04-18 14:15:21] 2025-04-18 18:15:07,986 | INFO     | ready for new job
[2025-04-18 14:15:21] 2025-04-18 18:15:07,986 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-18 14:15:21] 2025-04-18 18:15:07,989 | INFO     | **************************************
[2025-04-18 14:15:21] 2025-04-18 18:15:07,989 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-18 14:15:21] 2025-04-18 18:15:07,989 | INFO     | **************************************
[2025-04-18 14:15:21] 2025-04-18 18:15:07,989 | INFO     | 
[2025-04-18 14:15:21] 2025-04-18 18:15:07,991 | INFO     | architecture information:
[2025-04-18 14:15:21] 2025-04-18 18:15:07,992 | INFO     | executing command: cat /etc/os-release
[2025-04-18 14:15:21] 2025-04-18 18:15:08,016 | INFO     | cat /etc/os-release:
[2025-04-18 14:15:21] NAME="CentOS Linux"
[2025-04-18 14:15:21] VERSION="7 (Core)"
[2025-04-18 14:15:21] ID="centos"
[2025-04-18 14:15:21] ID_LIKE="rhel fedora"
[2025-04-18 14:15:21] VERSION_ID="7"
[2025-04-18 14:15:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-18 14:15:21] ANSI_COLOR="0;31"
[2025-04-18 14:15:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-18 14:15:21] HOME_URL="https://www.centos.org/"
[2025-04-18 14:15:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-18 14:15:21] 
[2025-04-18 14:15:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-18 14:15:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-18 14:15:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-18 14:15:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-18 14:15:21] 
[2025-04-18 14:15:21] 2025-04-18 18:15:08,017 | INFO     | **************************************
[2025-04-18 14:15:21] 2025-04-18 18:15:08,519 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-04-18 14:15:21] 2025-04-18 18:15:08,549 | INFO     | sufficient remaining disk space (56960745472 B)
[2025-04-18 14:15:21] 2025-04-18 18:15:08,550 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-18 14:15:21] 2025-04-18 18:15:08,550 | INFO     | current server update state: UPDATING_FINAL
[2025-04-18 14:15:21] 2025-04-18 18:15:08,550 | INFO     | update_server=False
[2025-04-18 14:15:21] 2025-04-18 18:15:08,550 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-18 14:15:21] 2025-04-18 18:15:08,551 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-18 14:15:21] 2025-04-18 18:15:08,551 | INFO     | found 0 job(s) in 20 queues
[2025-04-18 14:15:21] 2025-04-18 18:15:08,551 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-18 14:15:21] 2025-04-18 18:15:08,551 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-18 14:15:21] 2025-04-18 18:15:08,971 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-18 14:15:21] 2025-04-18 18:15:08,984 | INFO     | all job control threads have been joined
[2025-04-18 14:15:21] 2025-04-18 18:15:09,110 | INFO     | all data control threads have been joined
[2025-04-18 14:15:21] 2025-04-18 18:15:09,246 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-18 14:15:21] 2025-04-18 18:15:09,247 | INFO     | aborting loop
[2025-04-18 14:15:21] 2025-04-18 18:15:09,556 | INFO     | [job] retrieve thread has finished
[2025-04-18 14:15:21] 2025-04-18 18:15:09,948 | INFO     | [payload] validate_pre thread has finished
[2025-04-18 14:15:21] 2025-04-18 18:15:09,961 | INFO     | all payload control threads have been joined
[2025-04-18 14:15:21] 2025-04-18 18:15:09,989 | INFO     | [job] control thread has finished
[2025-04-18 14:15:21] 2025-04-18 18:15:10,115 | INFO     | [data] control thread has finished
[2025-04-18 14:15:21] 2025-04-18 18:15:10,252 | INFO     | [job] job monitor thread has finished
[2025-04-18 14:15:21] 2025-04-18 18:15:10,366 | INFO     | [job] create_data_payload thread has finished
[2025-04-18 14:15:21] 2025-04-18 18:15:10,670 | INFO     | [job] validate thread has finished
[2025-04-18 14:15:21] 2025-04-18 18:15:10,708 | INFO     | [data] copytool_in thread has finished
[2025-04-18 14:15:21] 2025-04-18 18:15:10,709 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-18 14:15:21] 2025-04-18 18:15:10,815 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-18 14:15:21] 2025-04-18 18:15:10,848 | INFO     | [payload] validate_post thread has finished
[2025-04-18 14:15:21] 2025-04-18 18:15:10,863 | INFO     | [payload] failed_post thread has finished
[2025-04-18 14:15:21] 2025-04-18 18:15:10,888 | INFO     | [payload] execute_payloads thread has finished
[2025-04-18 14:15:21] 2025-04-18 18:15:10,967 | INFO     | [payload] control thread has finished
[2025-04-18 14:15:21] 2025-04-18 18:15:10,983 | INFO     | [data] copytool_out thread has finished
[2025-04-18 14:15:21] 2025-04-18 18:15:11,484 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-18 14:15:21] 2025-04-18 18:15:12,490 | INFO     | [job] queue monitor thread has finished
[2025-04-18 14:15:21] 2025-04-18 18:15:14,821 | INFO     | [data] queue_monitor thread has finished
[2025-04-18 14:15:21] 2025-04-18 18:15:15,780 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139832709482304)>', '<ExcThread(monitor, started 139832407856896)>']
[2025-04-18 14:15:21] 2025-04-18 18:15:16,609 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-18 14:15:21] 2025-04-18 18:15:16,609 | INFO     | [monitor] control thread has ended
[2025-04-18 14:15:21] 2025-04-18 18:15:20,805 | INFO     | all workflow threads have been joined
[2025-04-18 14:15:21] 2025-04-18 18:15:20,805 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-18 14:15:21] 2025-04-18 18:15:20,805 | INFO     | traces error code: 0
[2025-04-18 14:15:21] 2025-04-18 18:15:20,806 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-18 14:15:21] 2025-04-18 18:15:20,984 [wrapper] ==== pilot stdout END ====
[2025-04-18 14:15:21] 2025-04-18 18:15:20,987 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-18 14:15:21] 2025-04-18 18:15:20,992 [wrapper] pilotpid: 42516
[2025-04-18 14:15:21] 2025-04-18 18:15:20,995 [wrapper] Pilot exit status: 0
[2025-04-18 14:15:21] 2025-04-18 18:15:21,015 [wrapper] pandaids: 6606213032
[2025-04-18 14:15:21] 2025-04-18 18:15:21,116 [wrapper] cleanup supervisor_pilot 29821 42517
[2025-04-18 14:15:21] 2025-04-18 18:15:21,119 [wrapper] Test setup, not cleaning
[2025-04-18 14:15:21] 2025-04-18 18:15:21,124 [wrapper] apfmon messages muted
[2025-04-18 14:15:21] 2025-04-18 18:15:21,128 [wrapper] ==== wrapper stdout END ====
[2025-04-18 14:15:21] 2025-04-18 18:15:21,131 [wrapper] ==== wrapper stderr END ====
[2025-04-18 14:15:21]  *** Error codes and diagnostics ***
[2025-04-18 14:15:21]     "exeErrorCode": 0,
[2025-04-18 14:15:21]     "exeErrorDiag": "",
[2025-04-18 14:15:21]     "pilotErrorCode": 0,
[2025-04-18 14:15:21]     "pilotErrorDiag": "",
[2025-04-18 14:15:21]  *** Listing of results directory ***
[2025-04-18 14:15:21] total 411520
[2025-04-18 14:15:21] -rw-r--r-- 1 boincer umatlas    495897 Apr 18 02:46 pilot3.tar.gz
[2025-04-18 14:15:21] -rw-r--r-- 1 boincer umatlas      5111 Apr 18 02:46 queuedata.json
[2025-04-18 14:15:21] -rwx------ 1 boincer umatlas     37140 Apr 18 02:47 runpilot2-wrapper.sh
[2025-04-18 14:15:21] -rw-r--r-- 1 boincer umatlas       100 Apr 18 05:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-18 14:15:21] -rwxr-xr-x 1 boincer umatlas      7986 Apr 18 05:40 run_atlas
[2025-04-18 14:15:21] -rw-r--r-- 1 boincer umatlas       105 Apr 18 05:40 job.xml
[2025-04-18 14:15:21] -rw-r--r-- 2 boincer umatlas 225097207 Apr 18 05:40 EVNT.44075481._002549.pool.root.1
[2025-04-18 14:15:21] -rw-r--r-- 2 boincer umatlas     17569 Apr 18 05:40 start_atlas.sh
[2025-04-18 14:15:21] drwxrwx--x 2 boincer umatlas      4096 Apr 18 05:40 shared
[2025-04-18 14:15:21] -rw-r--r-- 2 boincer umatlas    508897 Apr 18 05:40 input.tar.gz
[2025-04-18 14:15:21] -rw-r--r-- 1 boincer umatlas         0 Apr 18 05:40 boinc_lockfile
[2025-04-18 14:15:21] -rw-r--r-- 1 boincer umatlas      2579 Apr 18 05:40 pandaJob.out
[2025-04-18 14:15:21] -rw------- 1 boincer umatlas       467 Apr 18 05:40 setup.sh.local
[2025-04-18 14:15:21] -rw------- 1 boincer umatlas    990242 Apr 18 05:41 agis_schedconf.cvmfs.json
[2025-04-18 14:15:21] drwx------ 4 boincer umatlas      4096 Apr 18 05:41 pilot3
[2025-04-18 14:15:21] -rw-r--r-- 1 boincer umatlas      6036 Apr 18 14:10 init_data.xml
[2025-04-18 14:15:21] -rw------- 1 boincer umatlas 186372262 Apr 18 14:14 HITS.44075483._065608.pool.root.1
[2025-04-18 14:15:21] -rw-r--r-- 1 boincer umatlas       531 Apr 18 14:14 boinc_task_state.xml
[2025-04-18 14:15:21] -rw------- 1 boincer umatlas      1052 Apr 18 14:14 memory_monitor_summary.json
[2025-04-18 14:15:21] -rw------- 1 boincer umatlas        95 Apr 18 14:14 pilot_heartbeat.json
[2025-04-18 14:15:21] -rw------- 1 boincer umatlas   1618536 Apr 18 14:14 agis_ddmendpoints.agis.ALL.json
[2025-04-18 14:15:21] -rw------- 1 boincer umatlas    580298 Apr 18 14:14 log.44075483._065608.job.log.tgz.1
[2025-04-18 14:15:21] -rw------- 1 boincer umatlas      7742 Apr 18 14:15 heartbeat.json
[2025-04-18 14:15:21] -rw-r--r-- 1 boincer umatlas      8192 Apr 18 14:15 boinc_mmap_file
[2025-04-18 14:15:21] -rw-r--r-- 1 boincer umatlas        28 Apr 18 14:15 wrapper_checkpoint.txt
[2025-04-18 14:15:21] -rw------- 1 boincer umatlas      4476 Apr 18 14:15 pilotlog.txt
[2025-04-18 14:15:21] -rw------- 1 boincer umatlas   2451375 Apr 18 14:15 log.44075483._065608.job.log.1
[2025-04-18 14:15:21] -rw------- 1 boincer umatlas       357 Apr 18 14:15 output.list
[2025-04-18 14:15:21] -rw-r--r-- 1 boincer umatlas       620 Apr 18 14:15 runtime_log
[2025-04-18 14:15:21] -rw------- 1 boincer umatlas   3051520 Apr 18 14:15 result.tar.gz
[2025-04-18 14:15:21] -rw-r--r-- 1 boincer umatlas     11421 Apr 18 14:15 runtime_log.err
[2025-04-18 14:15:21] -rw------- 1 boincer umatlas       662 Apr 18 14:15 LgIMDmNguP7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmPr4KDmxovfVo.diag
[2025-04-18 14:15:21] -rw-r--r-- 1 boincer umatlas     20890 Apr 18 14:15 stderr.txt
[2025-04-18 14:15:21] HITS file was successfully produced:
[2025-04-18 14:15:21] -rw------- 1 boincer umatlas 186372262 Apr 18 14:14 shared/HITS.pool.root.1
[2025-04-18 14:15:21]  *** Contents of shared directory: ***
[2025-04-18 14:15:21] total 405336
[2025-04-18 14:15:21] -rw-r--r-- 2 boincer umatlas 225097207 Apr 18 05:40 ATLAS.root_0
[2025-04-18 14:15:21] -rw-r--r-- 2 boincer umatlas     17569 Apr 18 05:40 start_atlas.sh
[2025-04-18 14:15:21] -rw-r--r-- 2 boincer umatlas    508897 Apr 18 05:40 input.tar.gz
[2025-04-18 14:15:21] -rw------- 1 boincer umatlas 186372262 Apr 18 14:14 HITS.pool.root.1
[2025-04-18 14:15:21] -rw------- 1 boincer umatlas   3051520 Apr 18 14:15 result.tar.gz
14:15:22 (38649): run_atlas exited; CPU time 79225.028278
14:15:22 (38649): called boinc_finish(0)

</stderr_txt>
]]>

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