Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:08:45 (18133): wrapper (7.7.26015): starting
04:08:45 (18133): wrapper: running run_atlas (--nthreads 8)
[2025-04-18 04:08:45] Arguments: --nthreads 8
[2025-04-18 04:08:45] Threads: 8
[2025-04-18 04:08:45] Checking for CVMFS
[2025-04-18 04:08:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-18 04:08:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-18 04:08:45] Running cvmfs_config stat atlas.cern.ch
[2025-04-18 04:08:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-18 04:08:46] 2.11.2.0 2699 160155 125900 144994 1 56 13594318 20275200 1 130560 0 18950200 99.949 8707016 44663 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-18 04:08:46] CVMFS is ok
[2025-04-18 04:08:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-18 04:08:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-18 04:08:46] Further information can be found at the LHC@home message board.
[2025-04-18 04:08:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-18 04:08:46] Checking for apptainer binary...
[2025-04-18 04:08:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-18 04:08:46] Running /usr/bin/apptainer --version
[2025-04-18 04:08:46] apptainer version 1.3.2-1.el7
[2025-04-18 04:08:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-18 04:08:47] c-204-21.aglt2.org
[2025-04-18 04:08:47] apptainer works
[2025-04-18 04:08:47] Set ATHENA_PROC_NUMBER=8
[2025-04-18 04:08:47] Set ATHENA_CORE_NUMBER=8
[2025-04-18 04:08:47] Starting ATLAS job with PandaID=6606171602
[2025-04-18 04:08:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
05:29:32 (15271): wrapper (7.7.26015): starting
05:29:32 (15271): wrapper: running run_atlas (--nthreads 8)
[2025-04-18 05:29:32] Arguments: --nthreads 8
[2025-04-18 05:29:32] Threads: 8
[2025-04-18 05:29:32] This job has been restarted, cleaning up previous attempt
[2025-04-18 05:29:32] Checking for CVMFS
[2025-04-18 05:29:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-18 05:29:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-18 05:29:32] Running cvmfs_config stat atlas.cern.ch
[2025-04-18 05:29:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-18 05:29:32] 2.11.2.0 2699 160236 126460 144997 0 8 13760476 20275200 1 130560 0 19020096 99.949 8780880 44682 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-18 05:29:32] CVMFS is ok
[2025-04-18 05:29:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-18 05:29:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-18 05:29:32] Further information can be found at the LHC@home message board.
[2025-04-18 05:29:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-18 05:29:32] Checking for apptainer binary...
[2025-04-18 05:29:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-18 05:29:32] Running /usr/bin/apptainer --version
[2025-04-18 05:29:32] apptainer version 1.3.2-1.el7
[2025-04-18 05:29:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-18 05:29:34] c-204-21.aglt2.org
[2025-04-18 05:29:34] apptainer works
[2025-04-18 05:29:34] Set ATHENA_PROC_NUMBER=8
[2025-04-18 05:29:34] Set ATHENA_CORE_NUMBER=8
[2025-04-18 05:29:34] Starting ATLAS job with PandaID=6606171602
[2025-04-18 05:29:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-18 07:41:23]  *** The last 200 lines of the pilot log: ***
[2025-04-18 07:41:23] 2025-04-18 11:41:00,664 | INFO     | monitor loop #578: job 0:6606171602 is in state 'finished'
[2025-04-18 07:41:23] 2025-04-18 11:41:00,665 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-18 07:41:23] 2025-04-18 11:41:03,169 | INFO     | monitor loop #579: job 0:6606171602 is in state 'finished'
[2025-04-18 07:41:23] 2025-04-18 11:41:03,169 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-18 07:41:23] 2025-04-18 11:41:03,571 | INFO     | CPU arch script returned: x86-64-v2
[2025-04-18 07:41:23] 2025-04-18 11:41:03,572 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6606171602/memory_monitor_summary.json (trf name=prmon)
[2025-04-18 07:41:23] 2025-04-18 11:41:03,573 | INFO     | extracted standard info from prmon json
[2025-04-18 07:41:23] 2025-04-18 11:41:03,573 | INFO     | extracted standard memory fields from prmon json
[2025-04-18 07:41:23] 2025-04-18 11:41:03,573 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-18 07:41:23] 2025-04-18 11:41:03,574 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-18 07:41:23] 2025-04-18 11:41:03,574 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-18 07:41:23] 2025-04-18 11:41:03,579 | INFO     | fitting pss+swap vs Time
[2025-04-18 07:41:23] 2025-04-18 11:41:03,579 | INFO     | sum of square deviations: 665612480.0
[2025-04-18 07:41:23] 2025-04-18 11:41:03,580 | INFO     | sum of deviations: 7378540236.0
[2025-04-18 07:41:23] 2025-04-18 11:41:03,580 | INFO     | mean x: 1744972526.0
[2025-04-18 07:41:23] 2025-04-18 11:41:03,581 | INFO     | mean y: 2480611.0
[2025-04-18 07:41:23] 2025-04-18 11:41:03,581 | INFO     | -- intersect: -19341132047.53302
[2025-04-18 07:41:23] 2025-04-18 11:41:03,581 | INFO     | intersect: -19341132047.53302
[2025-04-18 07:41:23] 2025-04-18 11:41:03,581 | INFO     | chi2: 3.3318793533410553
[2025-04-18 07:41:23] 2025-04-18 11:41:03,581 | INFO     | sum of square deviations: 591173875.0
[2025-04-18 07:41:23] 2025-04-18 11:41:03,582 | INFO     | sum of deviations: 15658014207.499996
[2025-04-18 07:41:23] 2025-04-18 11:41:03,582 | INFO     | mean x: 1744972373.5
[2025-04-18 07:41:23] 2025-04-18 11:41:03,582 | INFO     | mean y: 2497024.60483871
[2025-04-18 07:41:23] 2025-04-18 11:41:03,582 | INFO     | -- intersect: -46215381287.35201
[2025-04-18 07:41:23] 2025-04-18 11:41:03,582 | INFO     | intersect: -46215381287.35201
[2025-04-18 07:41:23] 2025-04-18 11:41:03,583 | INFO     | chi2: 2.5889067355661144
[2025-04-18 07:41:23] 2025-04-18 11:41:03,583 | INFO     | current chi2=2.5889067355661144 (change=22.29890518184346 %)
[2025-04-18 07:41:23] 2025-04-18 11:41:03,583 | INFO     | right removable region: 123
[2025-04-18 07:41:23] 2025-04-18 11:41:03,583 | INFO     | sum of square deviations: 591173875.0
[2025-04-18 07:41:23] 2025-04-18 11:41:03,584 | INFO     | sum of deviations: -22724363092.5
[2025-04-18 07:41:23] 2025-04-18 11:41:03,584 | INFO     | mean x: 1744972678.5
[2025-04-18 07:41:23] 2025-04-18 11:41:03,584 | INFO     | mean y: 2541953.25
[2025-04-18 07:41:23] 2025-04-18 11:41:03,584 | INFO     | -- intersect: 67078227144.38986
[2025-04-18 07:41:23] 2025-04-18 11:41:03,584 | INFO     | intersect: 67078227144.38986
[2025-04-18 07:41:23] 2025-04-18 11:41:03,585 | INFO     | chi2: 1.017553784105858
[2025-04-18 07:41:23] 2025-04-18 11:41:03,585 | INFO     | current chi2=1.017553784105858 (change=69.46006514054893 %)
[2025-04-18 07:41:23] 2025-04-18 11:41:03,585 | INFO     | sum of square deviations: 522502820.0
[2025-04-18 07:41:23] 2025-04-18 11:41:03,586 | INFO     | sum of deviations: -26745113585.0
[2025-04-18 07:41:23] 2025-04-18 11:41:03,586 | INFO     | mean x: 1744972831.0
[2025-04-18 07:41:23] 2025-04-18 11:41:03,586 | INFO     | mean y: 2550679.0
[2025-04-18 07:41:23] 2025-04-18 11:41:03,586 | INFO     | -- intersect: 89321679268.26581
[2025-04-18 07:41:23] 2025-04-18 11:41:03,586 | INFO     | intersect: 89321679268.26581
[2025-04-18 07:41:23] 2025-04-18 11:41:03,586 | INFO     | chi2: 0.9011249351117685
[2025-04-18 07:41:23] 2025-04-18 11:41:03,586 | INFO     | current chi2=0.9011249351117685 (change=11.442033906482642 %)
[2025-04-18 07:41:23] 2025-04-18 11:41:03,587 | INFO     | left removable region: 20
[2025-04-18 07:41:23] 2025-04-18 11:41:03,587 | INFO     | sum of square deviations: 338804492.0
[2025-04-18 07:41:23] 2025-04-18 11:41:03,587 | INFO     | sum of deviations: -11428389589.000002
[2025-04-18 07:41:23] 2025-04-18 11:41:03,587 | INFO     | mean x: 1744972953.0
[2025-04-18 07:41:23] 2025-04-18 11:41:03,588 | INFO     | mean y: 2554537.86407767
[2025-04-18 07:41:23] 2025-04-18 11:41:03,588 | INFO     | -- intersect: 58863139919.80698
[2025-04-18 07:41:23] 2025-04-18 11:41:03,588 | INFO     | intersect: 58863139919.80698
[2025-04-18 07:41:23] 2025-04-18 11:41:03,588 | INFO     | chi2: 0.09150620724196332
[2025-04-18 07:41:23] 2025-04-18 11:41:03,588 | INFO     | -- intersect: 58863139919.80698
[2025-04-18 07:41:23] 2025-04-18 11:41:03,588 | INFO     | current memory leak: -33.73 B/s (using 103 data points, chi2=0.09)
[2025-04-18 07:41:23] 2025-04-18 11:41:03,589 | INFO     | ..............................
[2025-04-18 07:41:23] 2025-04-18 11:41:03,589 | INFO     | . Timing measurements:
[2025-04-18 07:41:23] 2025-04-18 11:41:03,589 | INFO     | . get job = 0 s
[2025-04-18 07:41:23] 2025-04-18 11:41:03,589 | INFO     | . initial setup = 1 s
[2025-04-18 07:41:23] 2025-04-18 11:41:03,589 | INFO     | . payload setup = 9 s
[2025-04-18 07:41:23] 2025-04-18 11:41:03,589 | INFO     | . stage-in = 0 s
[2025-04-18 07:41:23] 2025-04-18 11:41:03,590 | INFO     | . payload execution = 7832 s
[2025-04-18 07:41:23] 2025-04-18 11:41:03,590 | INFO     | . stage-out = 2 s
[2025-04-18 07:41:23] 2025-04-18 11:41:03,590 | INFO     | . log creation = 0 s
[2025-04-18 07:41:23] 2025-04-18 11:41:03,590 | INFO     | ..............................
[2025-04-18 07:41:23] 2025-04-18 11:41:03,688 | INFO     | 
[2025-04-18 07:41:23] 2025-04-18 11:41:03,688 | INFO     | job summary report
[2025-04-18 07:41:23] 2025-04-18 11:41:03,688 | INFO     | --------------------------------------------------
[2025-04-18 07:41:23] 2025-04-18 11:41:03,688 | INFO     | PanDA job id: 6606171602
[2025-04-18 07:41:23] 2025-04-18 11:41:03,689 | INFO     | task id: 44075483
[2025-04-18 07:41:23] 2025-04-18 11:41:03,689 | INFO     | errors: (none)
[2025-04-18 07:41:23] 2025-04-18 11:41:03,689 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-18 07:41:23] 2025-04-18 11:41:03,689 | INFO     | pilot state: finished 
[2025-04-18 07:41:23] 2025-04-18 11:41:03,689 | INFO     | transexitcode: 0
[2025-04-18 07:41:23] 2025-04-18 11:41:03,689 | INFO     | exeerrorcode: 0
[2025-04-18 07:41:23] 2025-04-18 11:41:03,689 | INFO     | exeerrordiag: 
[2025-04-18 07:41:23] 2025-04-18 11:41:03,690 | INFO     | exitcode: 0
[2025-04-18 07:41:23] 2025-04-18 11:41:03,690 | INFO     | exitmsg: OK
[2025-04-18 07:41:23] 2025-04-18 11:41:03,690 | INFO     | cpuconsumptiontime: 56498 s
[2025-04-18 07:41:23] 2025-04-18 11:41:03,690 | INFO     | nevents: 400
[2025-04-18 07:41:23] 2025-04-18 11:41:03,690 | INFO     | neventsw: 0
[2025-04-18 07:41:23] 2025-04-18 11:41:03,690 | INFO     | pid: 25644
[2025-04-18 07:41:23] 2025-04-18 11:41:03,690 | INFO     | pgrp: 25644
[2025-04-18 07:41:23] 2025-04-18 11:41:03,690 | INFO     | corecount: 8
[2025-04-18 07:41:23] 2025-04-18 11:41:03,691 | INFO     | event service: False
[2025-04-18 07:41:23] 2025-04-18 11:41:03,691 | INFO     | sizes: {0: 2426773, 1: 2426801, 7: 2427007, 11: 2427035, 7846: 2454518, 7848: 2463459, 7851: 2463643, 7857: 2463813}
[2025-04-18 07:41:23] 2025-04-18 11:41:03,691 | INFO     | --------------------------------------------------
[2025-04-18 07:41:23] 2025-04-18 11:41:03,691 | INFO     | 
[2025-04-18 07:41:23] 2025-04-18 11:41:03,691 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-04-18 07:41:23] 2025-04-18 11:41:03,719 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-18 07:41:23] 2025-04-18 11:41:03,720 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-18 07:41:23] 2025-04-18 11:41:03,720 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-18 07:41:23] 2025-04-18 11:41:03,720 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-18 07:41:23] 2025-04-18 11:41:03,720 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-18 07:41:23] 2025-04-18 11:41:03,721 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-18 07:41:23] 2025-04-18 11:41:03,721 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-18 07:41:23] 2025-04-18 11:41:03,721 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-18 07:41:23] 2025-04-18 11:41:03,721 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-18 07:41:23] 2025-04-18 11:41:03,721 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-18 07:41:23] 2025-04-18 11:41:03,722 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-18 07:41:23] 2025-04-18 11:41:03,722 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-18 07:41:23] 2025-04-18 11:41:03,722 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-18 07:41:23] 2025-04-18 11:41:03,722 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-18 07:41:23] 2025-04-18 11:41:03,722 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-18 07:41:23] 2025-04-18 11:41:03,722 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-18 07:41:23] 2025-04-18 11:41:03,723 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-18 07:41:23] 2025-04-18 11:41:03,723 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-18 07:41:23] 2025-04-18 11:41:03,723 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-18 07:41:23] 2025-04-18 11:41:03,723 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-18 07:41:23] 2025-04-18 11:41:03,723 | INFO     | job 6606171602 has completed (purged errors)
[2025-04-18 07:41:23] 2025-04-18 11:41:03,724 | INFO     | overall cleanup function is called
[2025-04-18 07:41:23] 2025-04-18 11:41:04,732 | INFO     | --- collectZombieJob: --- 10, [25644]
[2025-04-18 07:41:23] 2025-04-18 11:41:04,732 | INFO     | zombie collector waiting for pid 25644
[2025-04-18 07:41:23] 2025-04-18 11:41:04,733 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-18 07:41:23] 2025-04-18 11:41:04,733 | INFO     | collected zombie processes
[2025-04-18 07:41:23] 2025-04-18 11:41:04,733 | INFO     | will attempt to kill all subprocesses of pid=25644
[2025-04-18 07:41:23] 2025-04-18 11:41:04,822 | INFO     | process IDs to be killed: [25644] (in reverse order)
[2025-04-18 07:41:23] 2025-04-18 11:41:04,883 | WARNING  | found no corresponding commands to process id(s)
[2025-04-18 07:41:23] 2025-04-18 11:41:04,884 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-18 07:41:23] 2025-04-18 11:41:04,888 | INFO     | did not find any defunct processes belonging to 25644
[2025-04-18 07:41:23] 2025-04-18 11:41:04,892 | INFO     | did not find any defunct processes belonging to 25644
[2025-04-18 07:41:23] 2025-04-18 11:41:04,892 | INFO     | ready for new job
[2025-04-18 07:41:23] 2025-04-18 11:41:04,892 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-18 07:41:23] 2025-04-18 11:41:04,894 | INFO     | **************************************
[2025-04-18 07:41:23] 2025-04-18 11:41:04,894 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-18 07:41:23] 2025-04-18 11:41:04,895 | INFO     | **************************************
[2025-04-18 07:41:23] 2025-04-18 11:41:04,895 | INFO     | 
[2025-04-18 07:41:23] 2025-04-18 11:41:04,895 | INFO     | architecture information:
[2025-04-18 07:41:23] 2025-04-18 11:41:04,896 | INFO     | executing command: cat /etc/os-release
[2025-04-18 07:41:23] 2025-04-18 11:41:04,915 | INFO     | cat /etc/os-release:
[2025-04-18 07:41:23] NAME="CentOS Linux"
[2025-04-18 07:41:23] VERSION="7 (Core)"
[2025-04-18 07:41:23] ID="centos"
[2025-04-18 07:41:23] ID_LIKE="rhel fedora"
[2025-04-18 07:41:23] VERSION_ID="7"
[2025-04-18 07:41:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-18 07:41:23] ANSI_COLOR="0;31"
[2025-04-18 07:41:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-18 07:41:23] HOME_URL="https://www.centos.org/"
[2025-04-18 07:41:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-18 07:41:23] 
[2025-04-18 07:41:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-18 07:41:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-18 07:41:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-18 07:41:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-18 07:41:23] 
[2025-04-18 07:41:23] 2025-04-18 11:41:04,916 | INFO     | **************************************
[2025-04-18 07:41:23] 2025-04-18 11:41:05,419 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-04-18 07:41:23] 2025-04-18 11:41:05,440 | INFO     | sufficient remaining disk space (18581815296 B)
[2025-04-18 07:41:23] 2025-04-18 11:41:05,440 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-18 07:41:23] 2025-04-18 11:41:05,440 | INFO     | current server update state: UPDATING_FINAL
[2025-04-18 07:41:23] 2025-04-18 11:41:05,441 | INFO     | update_server=False
[2025-04-18 07:41:23] 2025-04-18 11:41:05,441 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-18 07:41:23] 2025-04-18 11:41:05,441 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-18 07:41:23] 2025-04-18 11:41:05,442 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-18 07:41:23] 2025-04-18 11:41:05,672 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-04-18 07:41:23] 2025-04-18 11:41:05,673 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-04-18 07:41:23] 2025-04-18 11:41:05,673 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-18 07:41:23] 2025-04-18 11:41:05,674 | INFO     | will abort loop
[2025-04-18 07:41:23] 2025-04-18 11:41:05,699 | INFO     | all payload control threads have been joined
[2025-04-18 07:41:23] 2025-04-18 11:41:05,764 | INFO     | PID=18970 has CPU usage=9.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-04-18 07:41:23] 2025-04-18 11:41:05,764 | INFO     | found 0 job(s) in 20 queues
[2025-04-18 07:41:23] 2025-04-18 11:41:05,765 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-18 07:41:23] 2025-04-18 11:41:05,765 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-18 07:41:23] 2025-04-18 11:41:06,317 | INFO     | all data control threads have been joined
[2025-04-18 07:41:23] 2025-04-18 11:41:06,325 | INFO     | all job control threads have been joined
[2025-04-18 07:41:23] 2025-04-18 11:41:06,447 | INFO     | [job] retrieve thread has finished
[2025-04-18 07:41:23] 2025-04-18 11:41:06,447 | INFO     | [job] queue monitor thread has finished
[2025-04-18 07:41:23] 2025-04-18 11:41:06,457 | INFO     | [payload] validate_post thread has finished
[2025-04-18 07:41:23] 2025-04-18 11:41:06,679 | INFO     | [job] job monitor thread has finished
[2025-04-18 07:41:23] 2025-04-18 11:41:06,704 | INFO     | [payload] control thread has finished
[2025-04-18 07:41:23] 2025-04-18 11:41:06,874 | INFO     | [data] copytool_in thread has finished
[2025-04-18 07:41:23] 2025-04-18 11:41:07,036 | INFO     | [payload] execute_payloads thread has finished
[2025-04-18 07:41:23] 2025-04-18 11:41:07,120 | INFO     | [payload] failed_post thread has finished
[2025-04-18 07:41:23] 2025-04-18 11:41:07,323 | INFO     | [data] control thread has finished
[2025-04-18 07:41:23] 2025-04-18 11:41:07,330 | INFO     | [job] control thread has finished
[2025-04-18 07:41:23] 2025-04-18 11:41:07,447 | INFO     | [data] copytool_out thread has finished
[2025-04-18 07:41:23] 2025-04-18 11:41:07,662 | INFO     | [job] validate thread has finished
[2025-04-18 07:41:23] 2025-04-18 11:41:07,844 | INFO     | [payload] validate_pre thread has finished
[2025-04-18 07:41:23] 2025-04-18 11:41:07,876 | INFO     | [job] create_data_payload thread has finished
[2025-04-18 07:41:23] 2025-04-18 11:41:08,383 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-18 07:41:23] 2025-04-18 11:41:12,389 | INFO     | [data] queue_monitor thread has finished
[2025-04-18 07:41:23] 2025-04-18 11:41:16,337 | INFO     | job.realtimelogging is not enabled
[2025-04-18 07:41:23] 2025-04-18 11:41:17,342 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-18 07:41:23] 2025-04-18 11:41:18,447 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140505578276672)>', '<ExcThread(monitor, started 140504477984512)>']
[2025-04-18 07:41:23] 2025-04-18 11:41:18,832 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-18 07:41:23] 2025-04-18 11:41:18,832 | INFO     | [monitor] control thread has ended
[2025-04-18 07:41:23] 2025-04-18 11:41:23,473 | INFO     | all workflow threads have been joined
[2025-04-18 07:41:23] 2025-04-18 11:41:23,473 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-18 07:41:23] 2025-04-18 11:41:23,474 | INFO     | traces error code: 0
[2025-04-18 07:41:23] 2025-04-18 11:41:23,474 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-18 07:41:23] 2025-04-18 11:41:23,603 [wrapper] ==== pilot stdout END ====
[2025-04-18 07:41:23] 2025-04-18 11:41:23,607 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-18 07:41:23] 2025-04-18 11:41:23,612 [wrapper] pilotpid: 18970
[2025-04-18 07:41:23] 2025-04-18 11:41:23,616 [wrapper] Pilot exit status: 0
[2025-04-18 07:41:23] 2025-04-18 11:41:23,636 [wrapper] pandaids: 6606171602 6606171602
[2025-04-18 07:41:23] 2025-04-18 11:41:23,682 [wrapper] cleanup supervisor_pilot 13791 18971
[2025-04-18 07:41:23] 2025-04-18 11:41:23,687 [wrapper] Test setup, not cleaning
[2025-04-18 07:41:23] 2025-04-18 11:41:23,692 [wrapper] apfmon messages muted
[2025-04-18 07:41:23] 2025-04-18 11:41:23,697 [wrapper] ==== wrapper stdout END ====
[2025-04-18 07:41:23] 2025-04-18 11:41:23,702 [wrapper] ==== wrapper stderr END ====
[2025-04-18 07:41:23]  *** Error codes and diagnostics ***
[2025-04-18 07:41:23]     "exeErrorCode": 0,
[2025-04-18 07:41:23]     "exeErrorDiag": "",
[2025-04-18 07:41:23]     "pilotErrorCode": 0,
[2025-04-18 07:41:23]     "pilotErrorDiag": "",
[2025-04-18 07:41:23]  *** Listing of results directory ***
[2025-04-18 07:41:23] total 639132
[2025-04-18 07:41:23] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-04-18 07:41:23] -rw-r--r-- 1 boincer umatlas    495897 Apr 18 01:10 pilot3.tar.gz
[2025-04-18 07:41:23] -rw-r--r-- 1 boincer umatlas      5111 Apr 18 01:18 queuedata.json
[2025-04-18 07:41:23] -rwx------ 1 boincer umatlas     37140 Apr 18 01:20 runpilot2-wrapper.sh
[2025-04-18 07:41:23] -rw-r--r-- 1 boincer umatlas       100 Apr 18 04:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-18 07:41:23] -rwxr-xr-x 1 boincer umatlas      7986 Apr 18 04:08 run_atlas
[2025-04-18 07:41:23] -rw-r--r-- 1 boincer umatlas       105 Apr 18 04:08 job.xml
[2025-04-18 07:41:23] -rw-r--r-- 3 boincer umatlas 225372031 Apr 18 04:08 EVNT.44075481._002516.pool.root.1
[2025-04-18 07:41:23] -rw-r--r-- 3 boincer umatlas 225372031 Apr 18 04:08 ATLAS.root_0
[2025-04-18 07:41:23] -rw-r--r-- 2 boincer umatlas    508891 Apr 18 04:08 input.tar.gz
[2025-04-18 07:41:23] -rw-r--r-- 2 boincer umatlas     17569 Apr 18 04:08 start_atlas.sh
[2025-04-18 07:41:23] drwxrwx--x 2 boincer umatlas      4096 Apr 18 04:08 shared
[2025-04-18 07:41:23] -rw-r--r-- 1 boincer umatlas         0 Apr 18 04:08 boinc_lockfile
[2025-04-18 07:41:23] -rw-r--r-- 1 boincer umatlas      2578 Apr 18 05:29 pandaJob.out
[2025-04-18 07:41:23] -rw------- 1 boincer umatlas       462 Apr 18 05:29 setup.sh.local
[2025-04-18 07:41:23] -rw------- 1 boincer umatlas    990242 Apr 18 05:29 agis_schedconf.cvmfs.json
[2025-04-18 07:41:23] -rw-r--r-- 1 boincer umatlas      5906 Apr 18 07:37 init_data.xml
[2025-04-18 07:41:23] -rw------- 1 boincer umatlas 197733681 Apr 18 07:40 HITS.44075483._064746.pool.root.1
[2025-04-18 07:41:23] -rw------- 1 boincer umatlas        96 Apr 18 07:40 pilot_heartbeat.json
[2025-04-18 07:41:23] -rw-r--r-- 1 boincer umatlas       530 Apr 18 07:40 boinc_task_state.xml
[2025-04-18 07:41:23] -rw------- 1 boincer umatlas      1049 Apr 18 07:40 memory_monitor_summary.json
[2025-04-18 07:41:23] -rw------- 1 boincer umatlas   1618536 Apr 18 07:40 agis_ddmendpoints.agis.ALL.json
[2025-04-18 07:41:23] -rw------- 1 boincer umatlas    344844 Apr 18 07:40 log.44075483._064746.job.log.tgz.1
[2025-04-18 07:41:23] -rw------- 1 boincer umatlas      7749 Apr 18 07:41 heartbeat.json
[2025-04-18 07:41:23] -rw-r--r-- 1 boincer umatlas      8192 Apr 18 07:41 boinc_mmap_file
[2025-04-18 07:41:23] -rw-r--r-- 1 boincer umatlas        28 Apr 18 07:41 wrapper_checkpoint.txt
[2025-04-18 07:41:23] -rw------- 1 boincer umatlas      4928 Apr 18 07:41 pilotlog.txt
[2025-04-18 07:41:23] -rw------- 1 boincer umatlas    718719 Apr 18 07:41 log.44075483._064746.job.log.1
[2025-04-18 07:41:23] -rw------- 1 boincer umatlas       357 Apr 18 07:41 output.list
[2025-04-18 07:41:23] -rw-r--r-- 1 boincer umatlas       620 Apr 18 07:41 runtime_log
[2025-04-18 07:41:23] -rw------- 1 boincer umatlas   1085440 Apr 18 07:41 result.tar.gz
[2025-04-18 07:41:23] -rw-r--r-- 1 boincer umatlas     11473 Apr 18 07:41 runtime_log.err
[2025-04-18 07:41:23] -rw------- 1 boincer umatlas       784 Apr 18 07:41 fl4MDmiKtP7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmpVeLDmJVLoXm.diag
[2025-04-18 07:41:23] -rw-r--r-- 1 boincer umatlas     23211 Apr 18 07:41 stderr.txt
[2025-04-18 07:41:23] HITS file was successfully produced:
[2025-04-18 07:41:23] -rw------- 1 boincer umatlas 197733681 Apr 18 07:40 shared/HITS.pool.root.1
[2025-04-18 07:41:23]  *** Contents of shared directory: ***
[2025-04-18 07:41:23] total 414776
[2025-04-18 07:41:23] -rw-r--r-- 3 boincer umatlas 225372031 Apr 18 04:08 ATLAS.root_0
[2025-04-18 07:41:23] -rw-r--r-- 2 boincer umatlas    508891 Apr 18 04:08 input.tar.gz
[2025-04-18 07:41:23] -rw-r--r-- 2 boincer umatlas     17569 Apr 18 04:08 start_atlas.sh
[2025-04-18 07:41:23] -rw------- 1 boincer umatlas 197733681 Apr 18 07:40 HITS.pool.root.1
[2025-04-18 07:41:23] -rw------- 1 boincer umatlas   1085440 Apr 18 07:41 result.tar.gz
07:41:25 (15271): run_atlas exited; CPU time 56438.548555
07:41:25 (15271): called boinc_finish(0)

</stderr_txt>
]]>

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