Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-18 09:53:05 (2452): Detected: vboxwrapper 26206
2025-04-18 09:53:05 (2452): Detected: BOINC client v8.0.2
2025-04-18 09:53:06 (2452): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-04-18 09:53:06 (2452): Successfully copied 'init_data.xml' to the shared directory.
2025-04-18 09:53:07 (2452): Create VM. (boinc_8c1482b117bbcc77, slot#0)
2025-04-18 09:53:07 (2452): Setting Memory Size for VM. (4800MB)
2025-04-18 09:53:07 (2452): Setting CPU Count for VM. (8)
2025-04-18 09:53:08 (2452): Setting Chipset Options for VM.
2025-04-18 09:53:08 (2452): Setting Graphics Controller Options for VM.
2025-04-18 09:53:08 (2452): Setting Boot Options for VM.
2025-04-18 09:53:08 (2452): Setting Network Configuration for NAT.
2025-04-18 09:53:09 (2452): Enabling VM Network Access.
2025-04-18 09:53:09 (2452): Disabling USB Support for VM.
2025-04-18 09:53:09 (2452): Disabling COM Port Support for VM.
2025-04-18 09:53:10 (2452): Disabling LPT Port Support for VM.
2025-04-18 09:53:10 (2452): Disabling Audio Support for VM.
2025-04-18 09:53:10 (2452): Disabling Clipboard Support for VM.
2025-04-18 09:53:10 (2452): Disabling Drag and Drop Support for VM.
2025-04-18 09:53:11 (2452): Adding storage controller(s) to VM.
2025-04-18 09:53:11 (2452): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-18 09:53:14 (2452): Adding VirtualBox Guest Additions to VM.
2025-04-18 09:53:14 (2452): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-18 09:53:14 (2452): forwarding host port 52076 to guest port 80
2025-04-18 09:53:15 (2452): Enabling remote desktop for VM.
2025-04-18 09:53:15 (2452): Required extension pack not installed, remote desktop not enabled.
2025-04-18 09:53:15 (2452): Enabling shared directory for VM.
2025-04-18 09:53:15 (2452): Starting VM using VBoxManage interface. (boinc_8c1482b117bbcc77, slot#0)
2025-04-18 09:53:20 (2452): Successfully started VM. (PID = '5972')
2025-04-18 09:53:20 (2452): Reporting VM Process ID to BOINC.
2025-04-18 09:53:20 (2452): Guest Log: BIOS: VirtualBox 7.1.8
2025-04-18 09:53:20 (2452): Guest Log: CPUID EDX: 0x178bfbff
2025-04-18 09:53:20 (2452): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-18 09:53:20 (2452): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-18 09:53:20 (2452): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-18 09:53:20 (2452): Detected: Web Application Enabled (http://localhost:52076)
2025-04-18 09:53:20 (2452): Preference change detected
2025-04-18 09:53:20 (2452): Setting CPU throttle for VM. (100%)
2025-04-18 09:53:20 (2452): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-18 09:53:22 (2452): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-18 09:53:22 (2452): Guest Log: BIOS: Booting from Hard Disk...
2025-04-18 09:53:24 (2452): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-18 09:53:24 (2452): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-18 09:53:24 (2452): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-18 09:53:24 (2452): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-18 09:53:24 (2452): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-18 09:53:24 (2452): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-18 09:53:24 (2452): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-18 09:53:24 (2452): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-18 09:53:24 (2452): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-18 09:53:24 (2452): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-18 09:53:24 (2452): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-18 09:53:24 (2452): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-18 09:53:24 (2452): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-18 09:53:24 (2452): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-18 09:53:24 (2452): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-18 09:53:24 (2452): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-18 09:53:24 (2452): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-18 09:53:24 (2452): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-18 09:53:24 (2452): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-18 09:53:24 (2452): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-18 09:53:24 (2452): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-18 09:53:24 (2452): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-18 09:53:24 (2452): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-18 09:53:24 (2452): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-18 09:53:24 (2452): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-18 09:53:24 (2452): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-18 09:53:24 (2452): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-18 09:53:24 (2452): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-18 09:53:24 (2452): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-18 09:53:24 (2452): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-18 09:53:24 (2452): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-18 09:53:24 (2452): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-18 09:53:32 (2452): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-18 09:53:32 (2452): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-18 09:53:36 (2452): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-18 09:53:36 (2452): Guest Log: 00:00:00.000192 main     Log opened 2025-04-18T09:53:34.515788000Z
2025-04-18 09:53:36 (2452): Guest Log: 00:00:00.000269 main     OS Product: Linux
2025-04-18 09:53:36 (2452): Guest Log: 00:00:00.000295 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-18 09:53:36 (2452): Guest Log: 00:00:00.000316 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-18 09:53:36 (2452): Guest Log: 00:00:00.000337 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-18 09:53:36 (2452): Guest Log: 00:00:00.000338 main     Process ID: 1375
2025-04-18 09:53:36 (2452): Guest Log: 00:00:00.000339 main     Package type: LINUX_64BITS_GENERIC
2025-04-18 09:53:36 (2452): Guest Log: 00:00:00.001458 main     5.2.32 r132073 started. Verbose level = 0
2025-04-18 09:53:36 (2452): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-18 09:53:36 (2452): Guest Log: [INFO] Mounting shared directory
2025-04-18 09:53:36 (2452): Guest Log: [INFO] Checking for init_data.xml
2025-04-18 09:53:40 (2452): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-18 09:53:41 (2452): Guest Log: [INFO] Detected branch: prod
2025-04-18 09:53:41 (2452): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-18 09:53:41 (2452): Guest Log: Copying input files
2025-04-18 09:53:42 (2452): Guest Log: Copied input files into RunAtlas.
2025-04-18 09:53:42 (2452): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-18 09:53:42 (2452): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-18 09:53:42 (2452): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-18 09:53:42 (2452): Guest Log: Further information can be found at the LHC@home message board.
2025-04-18 09:53:46 (2452): Guest Log: 00:00:10.003239 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 011 599 000ns (GuestNow=1 744 962 826 506 603 000 ns GuestLast=1 744 970 014 518 202 000 ns fSetTimeLastLoop=true )
2025-04-18 09:53:50 (2452): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-18 09:53:50 (2452): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-18 09:53:50 (2452): Guest Log: 2.6.3.0 1652 0 32188 144994 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-18 09:53:51 (2452): Guest Log: copied the webapp to /var/www
2025-04-18 09:53:52 (2452): Guest Log: ATHENA_PROC_NUMBER=8
2025-04-18 09:53:52 (2452): Guest Log: ATHENA_CORE_NUMBER=8
2025-04-18 09:53:52 (2452): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-18 09:53:52 (2452): Guest Log:  *** Starting ATLAS job. (PandaID=6606171383 taskID=44075483) ***
2025-04-18 11:09:16 (2452): Preference change detected
2025-04-18 11:09:16 (2452): Setting CPU throttle for VM. (100%)
2025-04-18 11:09:16 (2452): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-18 11:33:57 (2452): Status Report: Elapsed Time: '6000.000000'
2025-04-18 11:33:57 (2452): Status Report: CPU Time: '39661.796875'
2025-04-18 12:33:59 (2452): Guest Log:  *** Job finished ***
2025-04-18 12:33:59 (2452): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-18 12:33:59 (2452): Guest Log: 2025-04-18 10:33:46,222 | INFO     | [data] queue_monitor thread has finished
2025-04-18 12:33:59 (2452): Guest Log: 2025-04-18 10:33:51,727 | INFO     | job.realtimelogging is not enabled
2025-04-18 12:33:59 (2452): Guest Log: 2025-04-18 10:33:52,729 | INFO     | [payload] run_realtimelog thread has finished
2025-04-18 12:33:59 (2452): Guest Log: 2025-04-18 10:33:53,096 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139839156729664)>', '<ExcThread(monitor, started 139837894031104)>']
2025-04-18 12:33:59 (2452): Guest Log: 2025-04-18 10:33:53,271 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-18 12:33:59 (2452): Guest Log: 2025-04-18 10:33:53,273 | INFO     | [monitor] control thread has ended
2025-04-18 12:33:59 (2452): Guest Log: 2025-04-18 10:33:58,102 | INFO     | all workflow threads have been joined
2025-04-18 12:33:59 (2452): Guest Log: 2025-04-18 10:33:58,103 | INFO     | end of generic workflow (traces error code: 0)
2025-04-18 12:33:59 (2452): Guest Log: 2025-04-18 10:33:58,104 | INFO     | traces error code: 0
2025-04-18 12:33:59 (2452): Guest Log: 2025-04-18 10:33:58,105 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-18 12:33:59 (2452): Guest Log: 2025-04-18 10:33:58,324 [wrapper] ==== pilot stdout END ====
2025-04-18 12:33:59 (2452): Guest Log: 2025-04-18 10:33:58,336 [wrapper] ==== wrapper stdout RESUME ====
2025-04-18 12:33:59 (2452): Guest Log: 2025-04-18 10:33:58,342 [wrapper] pilotpid: 6011
2025-04-18 12:33:59 (2452): Guest Log: 2025-04-18 10:33:58,350 [wrapper] Pilot exit status: 0
2025-04-18 12:33:59 (2452): Guest Log: 2025-04-18 10:33:58,495 [wrapper] pandaids: 6606171383
2025-04-18 12:33:59 (2452): Guest Log: 2025-04-18 10:33:58,552 [wrapper] cleanup supervisor_pilot  6635 6012
2025-04-18 12:33:59 (2452): Guest Log: 2025-04-18 10:33:58,562 [wrapper] Test setup, not cleaning
2025-04-18 12:33:59 (2452): Guest Log: 2025-04-18 10:33:58,568 [wrapper] apfmon messages muted
2025-04-18 12:33:59 (2452): Guest Log: 2025-04-18 10:33:58,573 [wrapper] ==== wrapper stdout END ====
2025-04-18 12:33:59 (2452): Guest Log: 2025-04-18 10:33:58,578 [wrapper] ==== wrapper stderr END ====
2025-04-18 12:33:59 (2452): Guest Log:  *** Error codes and diagnostics ***
2025-04-18 12:33:59 (2452): Guest Log:     "exeErrorCode": 0,
2025-04-18 12:33:59 (2452): Guest Log:     "exeErrorDiag": "",
2025-04-18 12:33:59 (2452): Guest Log:     "pilotErrorCode": 0,
2025-04-18 12:33:59 (2452): Guest Log:     "pilotErrorDiag": "",
2025-04-18 12:33:59 (2452): Guest Log:  *** Listing of results directory ***
2025-04-18 12:33:59 (2452): Guest Log: total 196056
2025-04-18 12:33:59 (2452): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 18 04:52 pilot3.tar.gz
2025-04-18 12:33:59 (2452): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 18 04:59 queuedata.json
2025-04-18 12:33:59 (2452): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 18 05:00 runpilot2-wrapper.sh
2025-04-18 12:33:59 (2452): Guest Log: -rwxr-xr-x. 1 atlas atlas     12262 Apr 18 07:53 init_data.xml
2025-04-18 12:33:59 (2452): Guest Log: -rwxr-xr-x. 1 atlas atlas    508895 Apr 18 07:53 input.tar.gz
2025-04-18 12:33:59 (2452): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 18 07:53 start_atlas.sh
2025-04-18 12:33:59 (2452): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 18 07:53 EVNT.44075481._001623.pool.root.1 -> /data/./ATLAS.root_0
2025-04-18 12:33:59 (2452): Guest Log: -rw-r--r--. 1 atlas atlas      2579 Apr 18 07:53 pandaJob.out
2025-04-18 12:33:59 (2452): Guest Log: -rw-------. 1 atlas atlas       424 Apr 18 07:53 setup.sh.local
2025-04-18 12:33:59 (2452): Guest Log: -rw-------. 1 atlas atlas    990242 Apr 18 07:54 agis_schedconf.cvmfs.json
2025-04-18 12:33:59 (2452): Guest Log: -rw-------. 1 atlas atlas   1618536 Apr 18 07:54 agis_ddmendpoints.agis.ALL.json
2025-04-18 12:33:59 (2452): Guest Log: drwx------. 4 atlas atlas      4096 Apr 18 07:54 pilot3
2025-04-18 12:33:59 (2452): Guest Log: -rw-------. 1 atlas atlas 194727050 Apr 18 10:32 HITS.44075483._064527.pool.root.1
2025-04-18 12:33:59 (2452): Guest Log: -rw-------. 1 atlas atlas      1032 Apr 18 10:33 memory_monitor_summary.json
2025-04-18 12:33:59 (2452): Guest Log: -rw-------. 1 atlas atlas    334371 Apr 18 10:33 log.44075483._064527.job.log.tgz.1
2025-04-18 12:33:59 (2452): Guest Log: -rw-------. 1 atlas atlas        95 Apr 18 10:33 pilot_heartbeat.json
2025-04-18 12:33:59 (2452): Guest Log: -rw-------. 1 atlas atlas      7690 Apr 18 10:33 heartbeat.json
2025-04-18 12:33:59 (2452): Guest Log: -rw-------. 1 atlas atlas      4608 Apr 18 10:33 pilotlog.txt
2025-04-18 12:33:59 (2452): Guest Log: -rw-------. 1 atlas atlas    787098 Apr 18 10:33 log.44075483._064527.job.log.1
2025-04-18 12:33:59 (2452): Guest Log: -rw-------. 1 atlas atlas       357 Apr 18 10:33 output.list
2025-04-18 12:33:59 (2452): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 18 10:33 runtime_log
2025-04-18 12:33:59 (2452): Guest Log: -rw-------. 1 atlas atlas   1136640 Apr 18 10:33 result.tar.gz
2025-04-18 12:33:59 (2452): Guest Log: -rw-r--r--. 1 atlas atlas     10934 Apr 18 10:33 runtime_log.err
2025-04-18 12:33:59 (2452): Guest Log: -rw-------. 1 atlas atlas       656 Apr 18 10:33 p1nLDmq0sP7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmySeLDmwOk0dn.diag
2025-04-18 12:33:59 (2452): Guest Log: Looking for outputfile HITS.44075483._064527.pool.root.1
2025-04-18 12:33:59 (2452): Guest Log: HITS file was successfully produced
2025-04-18 12:33:59 (2452): Guest Log: -rw-------. 1 atlas atlas 194727050 Apr 18 10:32 /home/atlas/RunAtlas/HITS.44075483._064527.pool.root.1
2025-04-18 12:34:01 (2452): Guest Log: Successfully finished the ATLAS job!
2025-04-18 12:34:01 (2452): Guest Log: Copying the results back to the shared directory!
2025-04-18 12:34:02 (2452): Guest Log:  *** Contents of shared directory: ***
2025-04-18 12:34:02 (2452): Guest Log: total 409024
2025-04-18 12:34:02 (2452): Guest Log: -rwxrwxrwx. 1 root root 222426951 Apr 18 07:53 ATLAS.root_0
2025-04-18 12:34:02 (2452): Guest Log: -rwxrwxrwx. 1 root root 194727050 Apr 18 10:34 HITS.pool.root.1
2025-04-18 12:34:02 (2452): Guest Log: -rwxrwxrwx. 1 root root     12262 Apr 18 07:53 init_data.xml
2025-04-18 12:34:02 (2452): Guest Log: -rwxrwxrwx. 1 root root    508895 Apr 18 07:52 input.tar.gz
2025-04-18 12:34:02 (2452): Guest Log: -rwxrwxrwx. 1 root root   1136640 Apr 18 10:34 result.tar.gz
2025-04-18 12:34:02 (2452): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 18 07:52 start_atlas.sh
2025-04-18 12:34:02 (2452): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-18 12:34:02 (2452): VM Completion File Detected.
2025-04-18 12:34:02 (2452): Powering off VM.
2025-04-18 12:34:02 (2452): Successfully stopped VM.
2025-04-18 12:34:02 (2452): Deregistering VM. (boinc_8c1482b117bbcc77, slot#0)
2025-04-18 12:34:03 (2452): Removing network bandwidth throttle group from VM.
2025-04-18 12:34:03 (2452): Removing VM from VirtualBox.
12:34:08 (2452): called boinc_finish(0)

</stderr_txt>
]]>

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