Stderr output

<core_client_version>7.24.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-19 05:28:27 (93410): Detected: vboxwrapper 26206
2025-04-19 05:28:27 (93410): Detected: BOINC client v7.24.4
2025-04-19 05:28:27 (93410): Detected: VirtualBox VboxManage Interface (Version: 7.1.0)
2025-04-19 05:28:27 (93410): Detected: Sandbox Configuration Enabled
2025-04-19 05:28:27 (93410): Successfully copied 'init_data.xml' to the shared directory.
2025-04-19 05:28:28 (93410): Create VM. (boinc_607dbee4e538daf6, slot#3)
2025-04-19 05:28:28 (93410): Setting Memory Size for VM. (4800MB)
2025-04-19 05:28:28 (93410): Setting CPU Count for VM. (8)
2025-04-19 05:28:28 (93410): Setting Chipset Options for VM.
2025-04-19 05:28:28 (93410): Setting Graphics Controller Options for VM.
2025-04-19 05:28:28 (93410): Setting Boot Options for VM.
2025-04-19 05:28:28 (93410): Setting Network Configuration for NAT.
2025-04-19 05:28:28 (93410): Enabling VM Network Access.
2025-04-19 05:28:28 (93410): Disabling USB Support for VM.
2025-04-19 05:28:28 (93410): Disabling COM Port Support for VM.
2025-04-19 05:28:29 (93410): Disabling Audio Support for VM.
2025-04-19 05:28:29 (93410): Disabling Clipboard Support for VM.
2025-04-19 05:28:29 (93410): Disabling Drag and Drop Support for VM.
2025-04-19 05:28:29 (93410): Adding storage controller(s) to VM.
2025-04-19 05:28:29 (93410): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-19 05:28:31 (93410): Adding VirtualBox Guest Additions to VM.
2025-04-19 05:28:31 (93410): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-19 05:28:31 (93410): forwarding host port 56017 to guest port 80
2025-04-19 05:28:31 (93410): Enabling remote desktop for VM.
2025-04-19 05:28:31 (93410): Required extension pack not installed, remote desktop not enabled.
2025-04-19 05:28:31 (93410): Enabling shared directory for VM.
2025-04-19 05:28:31 (93410): Starting VM using VBoxManage interface. (boinc_607dbee4e538daf6, slot#3)
2025-04-19 05:28:37 (93410): Successfully started VM. (PID = '93586')
2025-04-19 05:28:37 (93410): Reporting VM Process ID to BOINC.
2025-04-19 05:28:37 (93410): Guest Log: BIOS: VirtualBox 7.1.0
2025-04-19 05:28:37 (93410): Guest Log: CPUID EDX: 0x178bfbff
2025-04-19 05:28:37 (93410): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-19 05:28:37 (93410): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-19 05:28:37 (93410): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-19 05:28:37 (93410): Detected: Web Application Enabled (http://localhost:56017)
2025-04-19 05:28:37 (93410): Preference change detected
2025-04-19 05:28:37 (93410): Setting CPU throttle for VM. (40%)
2025-04-19 05:28:37 (93410): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-19 05:28:39 (93410): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-19 05:28:39 (93410): Guest Log: BIOS: Booting from Hard Disk...
2025-04-19 05:28:43 (93410): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-19 05:28:43 (93410): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-19 05:28:43 (93410): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-19 05:28:43 (93410): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-19 05:28:43 (93410): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-19 05:28:43 (93410): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-19 05:28:43 (93410): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-19 05:28:43 (93410): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-19 05:28:43 (93410): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-19 05:28:43 (93410): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-19 05:28:43 (93410): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-19 05:28:43 (93410): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-19 05:28:43 (93410): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-19 05:28:43 (93410): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-19 05:28:43 (93410): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-19 05:28:43 (93410): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-19 05:28:43 (93410): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-19 05:28:43 (93410): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-19 05:28:43 (93410): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-19 05:28:43 (93410): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-19 05:28:43 (93410): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-19 05:28:43 (93410): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-19 05:28:43 (93410): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-19 05:28:43 (93410): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-19 05:28:43 (93410): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-19 05:28:43 (93410): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-19 05:28:43 (93410): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-19 05:28:43 (93410): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-19 05:28:43 (93410): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-19 05:28:43 (93410): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-19 05:28:43 (93410): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-19 05:28:43 (93410): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-19 05:29:02 (93410): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-19 05:29:02 (93410): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-19 05:29:35 (93410): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-19 05:29:35 (93410): Guest Log: 00:00:00.000216 main     Log opened 2025-04-18T20:29:33.898139000Z
2025-04-19 05:29:35 (93410): Guest Log: 00:00:00.000389 main     OS Product: Linux
2025-04-19 05:29:35 (93410): Guest Log: 00:00:00.000463 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-19 05:29:35 (93410): Guest Log: 00:00:00.000532 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-19 05:29:35 (93410): Guest Log: 00:00:00.000603 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-19 05:29:35 (93410): Guest Log: 00:00:00.000604 main     Process ID: 1376
2025-04-19 05:29:35 (93410): Guest Log: 00:00:00.000605 main     Package type: LINUX_64BITS_GENERIC
2025-04-19 05:29:35 (93410): Guest Log: 00:00:00.004628 main     5.2.32 r132073 started. Verbose level = 0
2025-04-19 05:29:36 (93410): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-19 05:29:36 (93410): Guest Log: [INFO] Mounting shared directory
2025-04-19 05:29:36 (93410): Guest Log: [INFO] Checking for init_data.xml
2025-04-19 05:29:52 (93410): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-19 05:29:52 (93410): Guest Log: [INFO] Detected branch: prod
2025-04-19 05:29:52 (93410): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-19 05:29:52 (93410): Guest Log: Copying input files
2025-04-19 05:30:03 (93410): Guest Log: Copied input files into RunAtlas.
2025-04-19 05:30:03 (93410): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-19 05:30:03 (93410): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-19 05:30:03 (93410): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-19 05:30:03 (93410): Guest Log: Further information can be found at the LHC@home message board.
2025-04-19 05:30:14 (93410): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-19 05:30:14 (93410): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-19 05:30:14 (93410): Guest Log: 2.6.3.0 1659 0 30192 145014 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-04-19 05:30:18 (93410): Guest Log: copied the webapp to /var/www
2025-04-19 05:30:18 (93410): Guest Log: ATHENA_PROC_NUMBER=8
2025-04-19 05:30:18 (93410): Guest Log: ATHENA_CORE_NUMBER=8
2025-04-19 05:30:19 (93410): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-19 05:30:19 (93410): Guest Log:  *** Starting ATLAS job. (PandaID=6605831701 taskID=44075483) ***
2025-04-19 07:08:37 (93410): Status Report: Elapsed Time: '6000.000000'
2025-04-19 07:08:37 (93410): Status Report: CPU Time: '22647.900000'
2025-04-19 08:48:37 (93410): Status Report: Elapsed Time: '12000.000000'
2025-04-19 08:48:37 (93410): Status Report: CPU Time: '51737.500000'
2025-04-19 10:28:37 (93410): Status Report: Elapsed Time: '18000.000000'
2025-04-19 10:28:37 (93410): Status Report: CPU Time: '80203.940000'
2025-04-19 12:08:37 (93410): Status Report: Elapsed Time: '24000.000000'
2025-04-19 12:08:37 (93410): Status Report: CPU Time: '108997.900000'
2025-04-19 12:16:18 (93410): Guest Log:  *** Job finished ***
2025-04-19 12:16:18 (93410): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-19 12:16:18 (93410): Guest Log: 2025-04-19 03:15:33,275 | INFO     | [data] copytool_out thread has finished
2025-04-19 12:16:18 (93410): Guest Log: 2025-04-19 03:15:33,880 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-04-19 12:16:18 (93410): Guest Log: 2025-04-19 03:15:37,969 | INFO     | [data] queue_monitor thread has finished
2025-04-19 12:16:18 (93410): Guest Log: 2025-04-19 03:15:38,299 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140251116402496)>', '<ExcThread(monitor, started 140250370254592)>']
2025-04-19 12:16:18 (93410): Guest Log: 2025-04-19 03:15:38,622 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-19 12:16:18 (93410): Guest Log: 2025-04-19 03:15:38,622 | INFO     | [monitor] control thread has ended
2025-04-19 12:16:18 (93410): Guest Log: 2025-04-19 03:15:43,305 | INFO     | all workflow threads have been joined
2025-04-19 12:16:18 (93410): Guest Log: 2025-04-19 03:15:43,305 | INFO     | end of generic workflow (traces error code: 0)
2025-04-19 12:16:18 (93410): Guest Log: 2025-04-19 03:15:43,306 | INFO     | traces error code: 0
2025-04-19 12:16:18 (93410): Guest Log: 2025-04-19 03:15:43,306 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-19 12:16:18 (93410): Guest Log: 2025-04-19 03:15:43,954 [wrapper] ==== pilot stdout END ====
2025-04-19 12:16:18 (93410): Guest Log: 2025-04-19 03:15:44,071 [wrapper] ==== wrapper stdout RESUME ====
2025-04-19 12:16:18 (93410): Guest Log: 2025-04-19 03:15:44,180 [wrapper] pilotpid: 6031
2025-04-19 12:16:18 (93410): Guest Log: 2025-04-19 03:15:44,328 [wrapper] Pilot exit status: 0
2025-04-19 12:16:18 (93410): Guest Log: 2025-04-19 03:15:44,874 [wrapper] pandaids: 6605831701
2025-04-19 12:16:18 (93410): Guest Log: 2025-04-19 03:15:46,062 [wrapper] cleanup supervisor_pilot 16570 6032
2025-04-19 12:16:18 (93410): Guest Log: 2025-04-19 03:15:46,342 [wrapper] Test setup, not cleaning
2025-04-19 12:16:18 (93410): Guest Log: 2025-04-19 03:15:46,591 [wrapper] apfmon messages muted
2025-04-19 12:16:18 (93410): Guest Log: 2025-04-19 03:15:46,736 [wrapper] ==== wrapper stdout END ====
2025-04-19 12:16:18 (93410): Guest Log: 2025-04-19 03:15:47,320 [wrapper] ==== wrapper stderr END ====
2025-04-19 12:16:18 (93410): Guest Log:  *** Error codes and diagnostics ***
2025-04-19 12:16:18 (93410): Guest Log:     "exeErrorCode": 0,
2025-04-19 12:16:18 (93410): Guest Log:     "exeErrorDiag": "",
2025-04-19 12:16:18 (93410): Guest Log:     "pilotErrorCode": 0,
2025-04-19 12:16:18 (93410): Guest Log:     "pilotErrorDiag": "",
2025-04-19 12:16:18 (93410): Guest Log:  *** Listing of results directory ***
2025-04-19 12:16:18 (93410): Guest Log: total 197896
2025-04-19 12:16:18 (93410): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 17 19:44 pilot3.tar.gz
2025-04-19 12:16:18 (93410): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 17 19:50 runpilot2-wrapper.sh
2025-04-19 12:16:18 (93410): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 17 19:50 queuedata.json
2025-04-19 12:16:18 (93410): Guest Log: -rw-r-----. 1 atlas atlas     17569 Apr 18 20:29 start_atlas.sh
2025-04-19 12:16:18 (93410): Guest Log: -rw-r-----. 1 atlas atlas    508883 Apr 18 20:29 input.tar.gz
2025-04-19 12:16:18 (93410): Guest Log: -rw-r--r--. 1 atlas atlas      7896 Apr 18 20:29 init_data.xml
2025-04-19 12:16:18 (93410): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 18 20:30 EVNT.44075481._002334.pool.root.1 -> /data/./ATLAS.root_0
2025-04-19 12:16:18 (93410): Guest Log: -rw-r--r--. 1 atlas atlas      2578 Apr 18 20:30 pandaJob.out
2025-04-19 12:16:18 (93410): Guest Log: -rw-------. 1 atlas atlas       424 Apr 18 20:30 setup.sh.local
2025-04-19 12:16:18 (93410): Guest Log: -rw-------. 1 atlas atlas    991292 Apr 18 20:31 agis_schedconf.cvmfs.json
2025-04-19 12:16:18 (93410): Guest Log: drwx------. 4 atlas atlas      4096 Apr 18 20:32 pilot3
2025-04-19 12:16:18 (93410): Guest Log: -rw-------. 1 atlas atlas 195829592 Apr 19 03:07 HITS.44075483._060034.pool.root.1
2025-04-19 12:16:18 (93410): Guest Log: -rw-------. 1 atlas atlas      1036 Apr 19 03:09 memory_monitor_summary.json
2025-04-19 12:16:18 (93410): Guest Log: -rw-------. 1 atlas atlas   1618536 Apr 19 03:10 agis_ddmendpoints.agis.ALL.json
2025-04-19 12:16:18 (93410): Guest Log: -rw-------. 1 atlas atlas    406652 Apr 19 03:10 log.44075483._060034.job.log.tgz.1
2025-04-19 12:16:18 (93410): Guest Log: -rw-------. 1 atlas atlas        95 Apr 19 03:15 pilot_heartbeat.json
2025-04-19 12:16:18 (93410): Guest Log: -rw-------. 1 atlas atlas      7702 Apr 19 03:15 heartbeat.json
2025-04-19 12:16:18 (93410): Guest Log: -rw-------. 1 atlas atlas      4722 Apr 19 03:15 pilotlog.txt
2025-04-19 12:16:18 (93410): Guest Log: -rw-------. 1 atlas atlas   1103782 Apr 19 03:15 log.44075483._060034.job.log.1
2025-04-19 12:16:18 (93410): Guest Log: -rw-------. 1 atlas atlas       357 Apr 19 03:15 output.list
2025-04-19 12:16:18 (93410): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 19 03:15 runtime_log
2025-04-19 12:16:18 (93410): Guest Log: -rw-------. 1 atlas atlas   1525760 Apr 19 03:15 result.tar.gz
2025-04-19 12:16:18 (93410): Guest Log: -rw-r--r--. 1 atlas atlas     10962 Apr 19 03:15 runtime_log.err
2025-04-19 12:16:19 (93410): Guest Log: -rw-------. 1 atlas atlas       671 Apr 19 03:15 bA2MDmoQkP7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmmedLDmrAiAVn.diag
2025-04-19 12:16:19 (93410): Guest Log: Looking for outputfile HITS.44075483._060034.pool.root.1
2025-04-19 12:16:19 (93410): Guest Log: HITS file was successfully produced
2025-04-19 12:16:19 (93410): Guest Log: -rw-------. 1 atlas atlas 195829592 Apr 19 03:07 /home/atlas/RunAtlas/HITS.44075483._060034.pool.root.1
2025-04-19 12:16:20 (93410): Guest Log: Successfully finished the ATLAS job!
2025-04-19 12:16:20 (93410): Guest Log: Copying the results back to the shared directory!
2025-04-19 12:16:21 (93410): Guest Log:  *** Contents of shared directory: ***
2025-04-19 12:16:21 (93410): Guest Log: total 231460
2025-04-19 12:16:21 (93410): Guest Log: -rw-rw----. 1 root root 222583930 Apr 18 20:28 ATLAS.root_0
2025-04-19 12:16:21 (93410): Guest Log: -rw-rw-r--. 1 root root      7896 Apr 18 20:28 init_data.xml
2025-04-19 12:16:21 (93410): Guest Log: -rw-rw----. 1 root root    508883 Apr 18 20:28 input.tar.gz
2025-04-19 12:16:21 (93410): Guest Log: -rw-r--r--. 1 root root   1525760 Apr 19  2025 result.tar.gz
2025-04-19 12:16:21 (93410): Guest Log: -rw-rw----. 1 root root     17569 Apr 18 20:28 start_atlas.sh
2025-04-19 12:16:21 (93410): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-19 12:16:21 (93410): VM Completion File Detected.
2025-04-19 12:16:21 (93410): Powering off VM.
2025-04-19 12:16:22 (93410): Successfully stopped VM.
2025-04-19 12:16:22 (93410): Deregistering VM. (boinc_607dbee4e538daf6, slot#3)
2025-04-19 12:16:22 (93410): Removing network bandwidth throttle group from VM.
2025-04-19 12:16:22 (93410): Removing VM from VirtualBox.
12:16:27 (93410): called boinc_finish(0)

</stderr_txt>
]]>

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