Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-18 09:22:59 (16216): Detected: vboxwrapper 26206
2025-04-18 09:22:59 (16216): Detected: BOINC client v8.0.2
2025-04-18 09:23:00 (16216): Detected: VirtualBox VboxManage Interface (Version: 7.0.8)
2025-04-18 09:23:01 (16216): Successfully copied 'init_data.xml' to the shared directory.
2025-04-18 09:23:01 (16216): Create VM. (boinc_f4c8494a43f07b43, slot#0)
2025-04-18 09:23:02 (16216): Setting Memory Size for VM. (4600MB)
2025-04-18 09:23:02 (16216): Setting CPU Count for VM. (6)
2025-04-18 09:23:02 (16216): Setting Chipset Options for VM.
2025-04-18 09:23:02 (16216): Setting Graphics Controller Options for VM.
2025-04-18 09:23:03 (16216): Setting Boot Options for VM.
2025-04-18 09:23:03 (16216): Setting Network Configuration for NAT.
2025-04-18 09:23:03 (16216): Enabling VM Network Access.
2025-04-18 09:23:04 (16216): Disabling USB Support for VM.
2025-04-18 09:23:04 (16216): Disabling COM Port Support for VM.
2025-04-18 09:23:04 (16216): Disabling LPT Port Support for VM.
2025-04-18 09:23:04 (16216): Disabling Audio Support for VM.
2025-04-18 09:23:05 (16216): Disabling Clipboard Support for VM.
2025-04-18 09:23:05 (16216): Disabling Drag and Drop Support for VM.
2025-04-18 09:23:05 (16216): Adding storage controller(s) to VM.
2025-04-18 09:23:05 (16216): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-18 09:23:08 (16216): Adding VirtualBox Guest Additions to VM.
2025-04-18 09:23:08 (16216): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-18 09:23:09 (16216): forwarding host port 61253 to guest port 80
2025-04-18 09:23:09 (16216): Enabling remote desktop for VM.
2025-04-18 09:23:10 (16216): Enabling shared directory for VM.
2025-04-18 09:23:10 (16216): Starting VM using VBoxManage interface. (boinc_f4c8494a43f07b43, slot#0)
2025-04-18 09:23:17 (16216): Successfully started VM. (PID = '17456')
2025-04-18 09:23:17 (16216): Reporting VM Process ID to BOINC.
2025-04-18 09:23:17 (16216): Guest Log: BIOS: VirtualBox 7.0.8
2025-04-18 09:23:17 (16216): Guest Log: CPUID EDX: 0x178bfbff
2025-04-18 09:23:17 (16216): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-18 09:23:17 (16216): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-18 09:23:17 (16216): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-18 09:23:17 (16216): Detected: Web Application Enabled (http://localhost:61253)
2025-04-18 09:23:17 (16216): Detected: Remote Desktop Enabled (localhost:61254)
2025-04-18 09:23:17 (16216): Preference change detected
2025-04-18 09:23:17 (16216): Setting CPU throttle for VM. (65%)
2025-04-18 09:23:18 (16216): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 500 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-18 09:23:19 (16216): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-18 09:23:19 (16216): Guest Log: BIOS: Booting from Hard Disk...
2025-04-18 09:23:22 (16216): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-18 09:23:22 (16216): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-18 09:23:22 (16216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-18 09:23:22 (16216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-18 09:23:22 (16216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-18 09:23:22 (16216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-18 09:23:22 (16216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-18 09:23:22 (16216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-18 09:23:22 (16216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-18 09:23:22 (16216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-18 09:23:22 (16216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-18 09:23:22 (16216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-18 09:23:22 (16216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-18 09:23:22 (16216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-18 09:23:22 (16216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-18 09:23:22 (16216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-18 09:23:22 (16216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-18 09:23:22 (16216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-18 09:23:22 (16216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-18 09:23:22 (16216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-18 09:23:22 (16216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-18 09:23:22 (16216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-18 09:23:22 (16216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-18 09:23:22 (16216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-18 09:23:22 (16216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-18 09:23:22 (16216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-18 09:23:22 (16216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-18 09:23:22 (16216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-18 09:23:22 (16216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-18 09:23:22 (16216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-18 09:23:22 (16216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-18 09:23:22 (16216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-18 09:23:28 (16216): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-18 09:23:28 (16216): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-18 09:23:34 (16216): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-18 09:23:34 (16216): Guest Log: 00:00:00.000149 main     Log opened 2025-04-18T09:23:32.548196000Z
2025-04-18 09:23:34 (16216): Guest Log: 00:00:00.000228 main     OS Product: Linux
2025-04-18 09:23:34 (16216): Guest Log: 00:00:00.000259 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-18 09:23:34 (16216): Guest Log: 00:00:00.000283 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-18 09:23:34 (16216): Guest Log: 00:00:00.000308 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-18 09:23:34 (16216): Guest Log: 00:00:00.000309 main     Process ID: 1330
2025-04-18 09:23:34 (16216): Guest Log: 00:00:00.000309 main     Package type: LINUX_64BITS_GENERIC
2025-04-18 09:23:34 (16216): Guest Log: 00:00:00.001998 main     5.2.32 r132073 started. Verbose level = 0
2025-04-18 09:23:34 (16216): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-18 09:23:34 (16216): Guest Log: [INFO] Mounting shared directory
2025-04-18 09:23:34 (16216): Guest Log: [INFO] Checking for init_data.xml
2025-04-18 09:23:44 (16216): Guest Log: 00:00:10.011200 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 004 250 000ns (GuestNow=1 744 961 024 546 989 000 ns GuestLast=1 744 968 212 551 239 000 ns fSetTimeLastLoop=true )
2025-04-18 09:25:57 (16216): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-18 09:25:57 (16216): Guest Log: [INFO] Detected branch: prod
2025-04-18 09:25:59 (16216): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-18 09:25:59 (16216): Guest Log: Copying input files
2025-04-18 09:26:00 (16216): Guest Log: Copied input files into RunAtlas.
2025-04-18 09:26:00 (16216): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-18 09:26:00 (16216): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-18 09:26:00 (16216): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-18 09:26:00 (16216): Guest Log: Further information can be found at the LHC@home message board.
2025-04-18 09:26:25 (16216): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-18 09:26:26 (16216): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-18 09:26:26 (16216): Guest Log: 2.6.3.0 1647 0 30160 144994 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-18 09:26:27 (16216): Guest Log: copied the webapp to /var/www
2025-04-18 09:26:27 (16216): Guest Log: ATHENA_PROC_NUMBER=6
2025-04-18 09:26:27 (16216): Guest Log: ATHENA_CORE_NUMBER=6
2025-04-18 09:26:27 (16216): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-18 09:26:27 (16216): Guest Log:  *** Starting ATLAS job. (PandaID=6605946075 taskID=44075483) ***
2025-04-18 11:03:21 (16216): Status Report: Elapsed Time: '6000.000000'
2025-04-18 11:03:21 (16216): Status Report: CPU Time: '21752.593750'
2025-04-18 12:43:25 (16216): Status Report: Elapsed Time: '12000.000000'
2025-04-18 12:43:25 (16216): Status Report: CPU Time: '48680.171875'
2025-04-18 12:48:52 (16216): Guest Log:  *** Job finished ***
2025-04-18 12:48:52 (16216): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-18 12:48:52 (16216): Guest Log: 2025-04-18 10:48:41,922 | INFO     | [payload] run_realtimelog thread has finished
2025-04-18 12:48:52 (16216): Guest Log: 2025-04-18 10:48:42,047 | INFO     | [data] copytool_out thread has finished
2025-04-18 12:48:52 (16216): Guest Log: 2025-04-18 10:48:45,918 | INFO     | [data] queue_monitor thread has finished
2025-04-18 12:48:52 (16216): Guest Log: 2025-04-18 10:48:46,675 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140023312353088)>', '<ExcThread(monitor, started 140022435014400)>']
2025-04-18 12:48:52 (16216): Guest Log: 2025-04-18 10:48:47,550 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-18 12:48:52 (16216): Guest Log: 2025-04-18 10:48:47,550 | INFO     | [monitor] control thread has ended
2025-04-18 12:48:52 (16216): Guest Log: 2025-04-18 10:48:51,915 | INFO     | all workflow threads have been joined
2025-04-18 12:48:52 (16216): Guest Log: 2025-04-18 10:48:51,915 | INFO     | end of generic workflow (traces error code: 0)
2025-04-18 12:48:52 (16216): Guest Log: 2025-04-18 10:48:51,915 | INFO     | traces error code: 0
2025-04-18 12:48:52 (16216): Guest Log: 2025-04-18 10:48:51,916 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-18 12:48:52 (16216): Guest Log: 2025-04-18 10:48:51,997 [wrapper] ==== pilot stdout END ====
2025-04-18 12:48:52 (16216): Guest Log: 2025-04-18 10:48:52,001 [wrapper] ==== wrapper stdout RESUME ====
2025-04-18 12:48:52 (16216): Guest Log: 2025-04-18 10:48:52,005 [wrapper] pilotpid: 5993
2025-04-18 12:48:52 (16216): Guest Log: 2025-04-18 10:48:52,009 [wrapper] Pilot exit status: 0
2025-04-18 12:48:52 (16216): Guest Log: 2025-04-18 10:48:52,099 [wrapper] pandaids: 6605946075
2025-04-18 12:48:52 (16216): Guest Log: 2025-04-18 10:48:52,136 [wrapper] cleanup supervisor_pilot  9799 5994
2025-04-18 12:48:52 (16216): Guest Log: 2025-04-18 10:48:52,140 [wrapper] Test setup, not cleaning
2025-04-18 12:48:52 (16216): Guest Log: 2025-04-18 10:48:52,145 [wrapper] apfmon messages muted
2025-04-18 12:48:52 (16216): Guest Log: 2025-04-18 10:48:52,149 [wrapper] ==== wrapper stdout END ====
2025-04-18 12:48:52 (16216): Guest Log: 2025-04-18 10:48:52,153 [wrapper] ==== wrapper stderr END ====
2025-04-18 12:48:52 (16216): Guest Log:  *** Error codes and diagnostics ***
2025-04-18 12:48:53 (16216): Guest Log:     "exeErrorCode": 0,
2025-04-18 12:48:53 (16216): Guest Log:     "exeErrorDiag": "",
2025-04-18 12:48:53 (16216): Guest Log:     "pilotErrorCode": 0,
2025-04-18 12:48:53 (16216): Guest Log:     "pilotErrorDiag": "",
2025-04-18 12:48:53 (16216): Guest Log:  *** Listing of results directory ***
2025-04-18 12:48:53 (16216): Guest Log: total 199932
2025-04-18 12:48:53 (16216): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 17 23:44 pilot3.tar.gz
2025-04-18 12:48:53 (16216): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 17 23:52 queuedata.json
2025-04-18 12:48:53 (16216): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 17 23:53 runpilot2-wrapper.sh
2025-04-18 12:48:53 (16216): Guest Log: -rwxr-xr-x. 1 atlas atlas      9177 Apr 18 07:26 init_data.xml
2025-04-18 12:48:53 (16216): Guest Log: -rwxr-xr-x. 1 atlas atlas    508896 Apr 18 07:26 input.tar.gz
2025-04-18 12:48:53 (16216): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 18 07:26 start_atlas.sh
2025-04-18 12:48:53 (16216): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 18 07:26 EVNT.44075481._002409.pool.root.1 -> /data/./ATLAS.root_0
2025-04-18 12:48:53 (16216): Guest Log: -rw-r--r--. 1 atlas atlas      2578 Apr 18 07:26 pandaJob.out
2025-04-18 12:48:53 (16216): Guest Log: -rw-------. 1 atlas atlas       424 Apr 18 07:26 setup.sh.local
2025-04-18 12:48:53 (16216): Guest Log: -rw-------. 1 atlas atlas    990242 Apr 18 07:27 agis_schedconf.cvmfs.json
2025-04-18 12:48:53 (16216): Guest Log: drwx------. 4 atlas atlas      4096 Apr 18 07:27 pilot3
2025-04-18 12:48:53 (16216): Guest Log: -rw-------. 1 atlas atlas 198449109 Apr 18 10:47 HITS.44075483._061970.pool.root.1
2025-04-18 12:48:53 (16216): Guest Log: -rw-------. 1 atlas atlas      1033 Apr 18 10:47 memory_monitor_summary.json
2025-04-18 12:48:53 (16216): Guest Log: -rw-------. 1 atlas atlas        95 Apr 18 10:47 pilot_heartbeat.json
2025-04-18 12:48:53 (16216): Guest Log: -rw-------. 1 atlas atlas   1618536 Apr 18 10:48 agis_ddmendpoints.agis.ALL.json
2025-04-18 12:48:53 (16216): Guest Log: -rw-------. 1 atlas atlas    328791 Apr 18 10:48 log.44075483._061970.job.log.tgz.1
2025-04-18 12:48:53 (16216): Guest Log: -rw-------. 1 atlas atlas      7730 Apr 18 10:48 heartbeat.json
2025-04-18 12:48:53 (16216): Guest Log: -rw-------. 1 atlas atlas      4413 Apr 18 10:48 pilotlog.txt
2025-04-18 12:48:53 (16216): Guest Log: -rw-------. 1 atlas atlas    914525 Apr 18 10:48 log.44075483._061970.job.log.1
2025-04-18 12:48:53 (16216): Guest Log: -rw-------. 1 atlas atlas       357 Apr 18 10:48 output.list
2025-04-18 12:48:53 (16216): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 18 10:48 runtime_log
2025-04-18 12:48:53 (16216): Guest Log: -rw-------. 1 atlas atlas   1259520 Apr 18 10:48 result.tar.gz
2025-04-18 12:48:53 (16216): Guest Log: -rw-r--r--. 1 atlas atlas     10957 Apr 18 10:48 runtime_log.err
2025-04-18 12:48:53 (16216): Guest Log: -rw-------. 1 atlas atlas       663 Apr 18 10:48 IS7MDmSEoP7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDm6ydLDmOiLrUn.diag
2025-04-18 12:48:53 (16216): Guest Log: Looking for outputfile HITS.44075483._061970.pool.root.1
2025-04-18 12:48:53 (16216): Guest Log: HITS file was successfully produced
2025-04-18 12:48:53 (16216): Guest Log: -rw-------. 1 atlas atlas 198449109 Apr 18 10:47 /home/atlas/RunAtlas/HITS.44075483._061970.pool.root.1
2025-04-18 12:48:54 (16216): Guest Log: Successfully finished the ATLAS job!
2025-04-18 12:48:54 (16216): Guest Log: Copying the results back to the shared directory!
2025-04-18 12:48:54 (16216): Guest Log:  *** Contents of shared directory: ***
2025-04-18 12:48:54 (16216): Guest Log: total 414448
2025-04-18 12:48:54 (16216): Guest Log: -rwxrwxrwx. 1 root root 224136083 Apr 18 07:22 ATLAS.root_0
2025-04-18 12:48:54 (16216): Guest Log: -rwxrwxrwx. 1 root root 198449109 Apr 18 10:48 HITS.pool.root.1
2025-04-18 12:48:54 (16216): Guest Log: -rwxrwxrwx. 1 root root      9177 Apr 18 07:22 init_data.xml
2025-04-18 12:48:54 (16216): Guest Log: -rwxrwxrwx. 1 root root    508896 Apr 18 04:15 input.tar.gz
2025-04-18 12:48:54 (16216): Guest Log: -rwxrwxrwx. 1 root root   1259520 Apr 18 10:48 result.tar.gz
2025-04-18 12:48:54 (16216): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 18 04:15 start_atlas.sh
2025-04-18 12:48:54 (16216): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-18 12:48:54 (16216): VM Completion File Detected.
2025-04-18 12:48:54 (16216): Powering off VM.
2025-04-18 12:48:55 (16216): Successfully stopped VM.
2025-04-18 12:48:55 (16216): Deregistering VM. (boinc_f4c8494a43f07b43, slot#0)
2025-04-18 12:48:55 (16216): Removing network bandwidth throttle group from VM.
2025-04-18 12:48:55 (16216): Removing VM from VirtualBox.
12:49:01 (16216): called boinc_finish(0)

</stderr_txt>
]]>

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