Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-17 22:01:38 (12720): Detected: vboxwrapper 26206
2025-04-17 22:01:38 (12720): Detected: BOINC client v8.0.4
2025-04-17 22:01:39 (12720): Detected: VirtualBox VboxManage Interface (Version: 7.0.24)
2025-04-17 22:01:39 (12720): Successfully copied 'init_data.xml' to the shared directory.
2025-04-17 22:01:40 (12720): Create VM. (boinc_370aebc5727f2896, slot#3)
2025-04-17 22:01:40 (12720): Setting Memory Size for VM. (4400MB)
2025-04-17 22:01:40 (12720): Setting CPU Count for VM. (4)
2025-04-17 22:01:41 (12720): Setting Chipset Options for VM.
2025-04-17 22:01:41 (12720): Setting Graphics Controller Options for VM.
2025-04-17 22:01:41 (12720): Setting Boot Options for VM.
2025-04-17 22:01:42 (12720): Setting Network Configuration for NAT.
2025-04-17 22:01:42 (12720): Enabling VM Network Access.
2025-04-17 22:01:42 (12720): Disabling USB Support for VM.
2025-04-17 22:01:42 (12720): Disabling COM Port Support for VM.
2025-04-17 22:01:43 (12720): Disabling LPT Port Support for VM.
2025-04-17 22:01:43 (12720): Disabling Audio Support for VM.
2025-04-17 22:01:43 (12720): Disabling Clipboard Support for VM.
2025-04-17 22:01:43 (12720): Disabling Drag and Drop Support for VM.
2025-04-17 22:01:44 (12720): Adding storage controller(s) to VM.
2025-04-17 22:01:44 (12720): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-17 22:01:44 (12720): Adding VirtualBox Guest Additions to VM.
2025-04-17 22:01:45 (12720): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-17 22:01:45 (12720): forwarding host port 53111 to guest port 80
2025-04-17 22:01:45 (12720): Enabling remote desktop for VM.
2025-04-17 22:01:45 (12720): Required extension pack not installed, remote desktop not enabled.
2025-04-17 22:01:45 (12720): Enabling shared directory for VM.
2025-04-17 22:01:46 (12720): Starting VM using VBoxManage interface. (boinc_370aebc5727f2896, slot#3)
2025-04-17 22:01:50 (12720): Successfully started VM. (PID = '11360')
2025-04-17 22:01:50 (12720): Reporting VM Process ID to BOINC.
2025-04-17 22:01:50 (12720): Guest Log: BIOS: VirtualBox 7.0.24
2025-04-17 22:01:50 (12720): Guest Log: CPUID EDX: 0x178bfbff
2025-04-17 22:01:50 (12720): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-17 22:01:50 (12720): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-17 22:01:50 (12720): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-17 22:01:50 (12720): Detected: Web Application Enabled (http://localhost:53111)
2025-04-17 22:01:50 (12720): Preference change detected
2025-04-17 22:01:50 (12720): Setting CPU throttle for VM. (100%)
2025-04-17 22:01:50 (12720): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-17 22:01:52 (12720): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-17 22:01:52 (12720): Guest Log: BIOS: Booting from Hard Disk...
2025-04-17 22:01:55 (12720): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-17 22:01:55 (12720): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-17 22:01:55 (12720): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-17 22:01:55 (12720): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-17 22:01:55 (12720): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-17 22:01:55 (12720): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-17 22:01:55 (12720): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-17 22:01:55 (12720): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-17 22:01:55 (12720): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-17 22:01:55 (12720): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-17 22:01:55 (12720): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-17 22:01:55 (12720): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-17 22:01:55 (12720): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-17 22:01:55 (12720): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-17 22:01:55 (12720): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-17 22:01:55 (12720): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-17 22:01:55 (12720): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-17 22:01:55 (12720): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-17 22:01:55 (12720): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-17 22:01:55 (12720): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-17 22:01:55 (12720): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-17 22:01:55 (12720): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-17 22:01:55 (12720): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-17 22:01:55 (12720): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-17 22:01:55 (12720): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-17 22:01:55 (12720): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-17 22:01:55 (12720): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-17 22:01:55 (12720): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-17 22:01:55 (12720): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-17 22:01:55 (12720): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-17 22:01:55 (12720): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-17 22:01:55 (12720): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-17 22:02:03 (12720): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-17 22:02:03 (12720): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-17 22:02:09 (12720): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-17 22:02:09 (12720): Guest Log: 00:00:00.000202 main     Log opened 2025-04-17T22:02:08.130031000Z
2025-04-17 22:02:09 (12720): Guest Log: 00:00:00.000295 main     OS Product: Linux
2025-04-17 22:02:09 (12720): Guest Log: 00:00:00.000324 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-17 22:02:09 (12720): Guest Log: 00:00:00.000358 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-17 22:02:09 (12720): Guest Log: 00:00:00.000405 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-17 22:02:09 (12720): Guest Log: 00:00:00.000406 main     Process ID: 1295
2025-04-17 22:02:09 (12720): Guest Log: 00:00:00.000406 main     Package type: LINUX_64BITS_GENERIC
2025-04-17 22:02:09 (12720): Guest Log: 00:00:00.003429 main     5.2.32 r132073 started. Verbose level = 0
2025-04-17 22:02:09 (12720): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-17 22:02:09 (12720): Guest Log: [INFO] Mounting shared directory
2025-04-17 22:02:09 (12720): Guest Log: [INFO] Checking for init_data.xml
2025-04-17 22:02:12 (12720): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-17 22:02:12 (12720): Guest Log: [INFO] Detected branch: prod
2025-04-17 22:02:12 (12720): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-17 22:02:12 (12720): Guest Log: Copying input files
2025-04-17 22:02:13 (12720): Guest Log: Copied input files into RunAtlas.
2025-04-17 22:02:13 (12720): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-17 22:02:13 (12720): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-17 22:02:13 (12720): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-17 22:02:13 (12720): Guest Log: Further information can be found at the LHC@home message board.
2025-04-17 22:02:19 (12720): Guest Log: 00:00:10.012965 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 410 944 943 000ns (GuestNow=1 744 941 739 085 846 000 ns GuestLast=1 744 927 328 140 903 000 ns fSetTimeLastLoop=true )
2025-04-17 22:02:22 (12720): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-17 22:02:22 (12720): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-17 22:02:22 (12720): Guest Log: 2.6.3.0 1573 0 30180 144984 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-17 22:02:23 (12720): Guest Log: copied the webapp to /var/www
2025-04-17 22:02:23 (12720): Guest Log: ATHENA_PROC_NUMBER=4
2025-04-17 22:02:23 (12720): Guest Log: ATHENA_CORE_NUMBER=4
2025-04-17 22:02:23 (12720): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-17 22:02:24 (12720): Guest Log:  *** Starting ATLAS job. (PandaID=6596005533 taskID=44075164) ***
2025-04-17 23:41:54 (12720): Status Report: Elapsed Time: '6000.000000'
2025-04-17 23:41:54 (12720): Status Report: CPU Time: '13603.875000'
2025-04-18 01:18:06 (12720): Guest Log:  *** Job finished ***
2025-04-18 01:18:06 (12720): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-18 01:18:06 (12720): Guest Log: 2025-04-18 05:17:52,635 | INFO     | [data] copytool_in thread has finished
2025-04-18 01:18:06 (12720): Guest Log: 2025-04-18 05:17:53,638 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-04-18 01:18:06 (12720): Guest Log: 2025-04-18 05:17:57,894 | INFO     | [data] queue_monitor thread has finished
2025-04-18 01:18:06 (12720): Guest Log: 2025-04-18 05:17:58,440 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140272001607488)>', '<ExcThread(monitor, started 140271325005568)>']
2025-04-18 01:18:06 (12720): Guest Log: 2025-04-18 05:17:58,920 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-18 01:18:06 (12720): Guest Log: 2025-04-18 05:17:58,920 | INFO     | [monitor] control thread has ended
2025-04-18 01:18:06 (12720): Guest Log: 2025-04-18 05:18:03,488 | INFO     | all workflow threads have been joined
2025-04-18 01:18:06 (12720): Guest Log: 2025-04-18 05:18:03,488 | INFO     | end of generic workflow (traces error code: 0)
2025-04-18 01:18:06 (12720): Guest Log: 2025-04-18 05:18:03,488 | INFO     | traces error code: 0
2025-04-18 01:18:06 (12720): Guest Log: 2025-04-18 05:18:03,488 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-18 01:18:06 (12720): Guest Log: 2025-04-18 05:18:03,577 [wrapper] ==== pilot stdout END ====
2025-04-18 01:18:06 (12720): Guest Log: 2025-04-18 05:18:03,600 [wrapper] ==== wrapper stdout RESUME ====
2025-04-18 01:18:06 (12720): Guest Log: 2025-04-18 05:18:03,620 [wrapper] pilotpid: 5901
2025-04-18 01:18:06 (12720): Guest Log: 2025-04-18 05:18:03,636 [wrapper] Pilot exit status: 0
2025-04-18 01:18:06 (12720): Guest Log: 2025-04-18 05:18:03,744 [wrapper] pandaids: 6596005533
2025-04-18 01:18:06 (12720): Guest Log: 2025-04-18 05:18:03,898 [wrapper] cleanup supervisor_pilot 10709 5902
2025-04-18 01:18:06 (12720): Guest Log: 2025-04-18 05:18:03,923 [wrapper] Test setup, not cleaning
2025-04-18 01:18:06 (12720): Guest Log: 2025-04-18 05:18:03,934 [wrapper] apfmon messages muted
2025-04-18 01:18:06 (12720): Guest Log: 2025-04-18 05:18:03,951 [wrapper] ==== wrapper stdout END ====
2025-04-18 01:18:06 (12720): Guest Log: 2025-04-18 05:18:03,978 [wrapper] ==== wrapper stderr END ====
2025-04-18 01:18:06 (12720): Guest Log:  *** Error codes and diagnostics ***
2025-04-18 01:18:06 (12720): Guest Log:     "exeErrorCode": 0,
2025-04-18 01:18:06 (12720): Guest Log:     "exeErrorDiag": "",
2025-04-18 01:18:06 (12720): Guest Log:     "pilotErrorCode": 0,
2025-04-18 01:18:06 (12720): Guest Log:     "pilotErrorDiag": "",
2025-04-18 01:18:06 (12720): Guest Log:  *** Listing of results directory ***
2025-04-18 01:18:06 (12720): Guest Log: total 198152
2025-04-18 01:18:06 (12720): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 10 14:38 pilot3.tar.gz
2025-04-18 01:18:06 (12720): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 10 14:46 queuedata.json
2025-04-18 01:18:06 (12720): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 10 14:46 runpilot2-wrapper.sh
2025-04-18 01:18:06 (12720): Guest Log: -rwxr-xr-x. 1 atlas atlas     15510 Apr 18 02:02 init_data.xml
2025-04-18 01:18:06 (12720): Guest Log: -rwxr-xr-x. 1 atlas atlas    508883 Apr 18 02:02 input.tar.gz
2025-04-18 01:18:06 (12720): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 18 02:02 start_atlas.sh
2025-04-18 01:18:06 (12720): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 18 02:02 EVNT.44075162._001095.pool.root.1 -> /data/./ATLAS.root_0
2025-04-18 01:18:06 (12720): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Apr 18 02:02 pandaJob.out
2025-04-18 01:18:06 (12720): Guest Log: -rw-------. 1 atlas atlas       424 Apr 18 02:02 setup.sh.local
2025-04-18 01:18:06 (12720): Guest Log: -rw-------. 1 atlas atlas    990250 Apr 18 02:03 agis_schedconf.cvmfs.json
2025-04-18 01:18:06 (12720): Guest Log: drwx------. 4 atlas atlas      4096 Apr 18 02:03 pilot3
2025-04-18 01:18:06 (12720): Guest Log: -rw-------. 1 atlas atlas 196590772 Apr 18 05:16 HITS.44075164._027574.pool.root.1
2025-04-18 01:18:06 (12720): Guest Log: -rw-------. 1 atlas atlas      1031 Apr 18 05:17 memory_monitor_summary.json
2025-04-18 01:18:06 (12720): Guest Log: -rw-------. 1 atlas atlas        95 Apr 18 05:17 pilot_heartbeat.json
2025-04-18 01:18:06 (12720): Guest Log: -rw-------. 1 atlas atlas   1618536 Apr 18 05:17 agis_ddmendpoints.agis.ALL.json
2025-04-18 01:18:06 (12720): Guest Log: -rw-------. 1 atlas atlas    292408 Apr 18 05:17 log.44075164._027574.job.log.tgz.1
2025-04-18 01:18:06 (12720): Guest Log: -rw-------. 1 atlas atlas      7727 Apr 18 05:17 heartbeat.json
2025-04-18 01:18:06 (12720): Guest Log: -rw-------. 1 atlas atlas      4413 Apr 18 05:18 pilotlog.txt
2025-04-18 01:18:06 (12720): Guest Log: -rw-------. 1 atlas atlas    965270 Apr 18 05:18 log.44075164._027574.job.log.1
2025-04-18 01:18:06 (12720): Guest Log: -rw-------. 1 atlas atlas       357 Apr 18 05:18 output.list
2025-04-18 01:18:06 (12720): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 18 05:18 runtime_log
2025-04-18 01:18:06 (12720): Guest Log: -rw-------. 1 atlas atlas   1280000 Apr 18 05:18 result.tar.gz
2025-04-18 01:18:06 (12720): Guest Log: -rw-------. 1 atlas atlas       649 Apr 18 05:18 zFELDm7L8M7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmSZOLDmVU7J6n.diag
2025-04-18 01:18:06 (12720): Guest Log: -rw-r--r--. 1 atlas atlas     10912 Apr 18 05:18 runtime_log.err
2025-04-18 01:18:06 (12720): Guest Log: Looking for outputfile HITS.44075164._027574.pool.root.1
2025-04-18 01:18:06 (12720): Guest Log: HITS file was successfully produced
2025-04-18 01:18:06 (12720): Guest Log: -rw-------. 1 atlas atlas 196590772 Apr 18 05:16 /home/atlas/RunAtlas/HITS.44075164._027574.pool.root.1
2025-04-18 01:18:07 (12720): Guest Log: Successfully finished the ATLAS job!
2025-04-18 01:18:07 (12720): Guest Log: Copying the results back to the shared directory!
2025-04-18 01:18:08 (12720): Guest Log:  *** Contents of shared directory: ***
2025-04-18 01:18:08 (12720): Guest Log: total 410448
2025-04-18 01:18:08 (12720): Guest Log: -rwxrwxrwx. 1 root root 221875193 Apr 18 02:01 ATLAS.root_0
2025-04-18 01:18:08 (12720): Guest Log: -rwxrwxrwx. 1 root root 196590772 Apr 18 05:18 HITS.pool.root.1
2025-04-18 01:18:08 (12720): Guest Log: -rwxrwxrwx. 1 root root     15510 Apr 18 02:01 init_data.xml
2025-04-18 01:18:08 (12720): Guest Log: -rwxrwxrwx. 1 root root    508883 Apr 18 02:01 input.tar.gz
2025-04-18 01:18:08 (12720): Guest Log: -rwxrwxrwx. 1 root root   1280000 Apr 18 05:18 result.tar.gz
2025-04-18 01:18:08 (12720): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 18 02:01 start_atlas.sh
2025-04-18 01:18:08 (12720): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-18 01:18:08 (12720): VM Completion File Detected.
2025-04-18 01:18:08 (12720): Powering off VM.
2025-04-18 01:18:09 (12720): Successfully stopped VM.
2025-04-18 01:18:09 (12720): Deregistering VM. (boinc_370aebc5727f2896, slot#3)
2025-04-18 01:18:09 (12720): Removing network bandwidth throttle group from VM.
2025-04-18 01:18:09 (12720): Removing VM from VirtualBox.
01:18:14 (12720): called boinc_finish(0)

</stderr_txt>
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