Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:57:31 (23289): wrapper (7.7.26015): starting
16:57:31 (23289): wrapper: running run_atlas (--nthreads 8)
[2025-04-17 16:57:31] Arguments: --nthreads 8
[2025-04-17 16:57:31] Threads: 8
[2025-04-17 16:57:31] Checking for CVMFS
[2025-04-17 16:57:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-17 16:57:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-17 16:57:32] Running cvmfs_config stat atlas.cern.ch
[2025-04-17 16:57:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-17 16:57:32] 2.11.2.0 2857 133803 122528 144977 2 58 11559334 20275201 1 130560 0 17983188 99.960 7818309 44963 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-17 16:57:32] CVMFS is ok
[2025-04-17 16:57:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-17 16:57:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-17 16:57:32] Further information can be found at the LHC@home message board.
[2025-04-17 16:57:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-17 16:57:32] Checking for apptainer binary...
[2025-04-17 16:57:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-17 16:57:32] Running /usr/bin/apptainer --version
[2025-04-17 16:57:32] apptainer version 1.3.2-1.el7
[2025-04-17 16:57:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-17 16:57:34] c-204-15.aglt2.org
[2025-04-17 16:57:34] apptainer works
[2025-04-17 16:57:34] Set ATHENA_PROC_NUMBER=8
[2025-04-17 16:57:34] Set ATHENA_CORE_NUMBER=8
[2025-04-17 16:57:34] Starting ATLAS job with PandaID=6605316808
[2025-04-17 16:57:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:10:55 (28217): wrapper (7.7.26015): starting
19:10:55 (28217): wrapper: running run_atlas (--nthreads 8)
[2025-04-17 19:10:55] Arguments: --nthreads 8
[2025-04-17 19:10:55] Threads: 8
[2025-04-17 19:10:55] This job has been restarted, cleaning up previous attempt
[2025-04-17 19:10:55] Checking for CVMFS
[2025-04-17 19:10:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-17 19:10:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-17 19:10:56] Running cvmfs_config stat atlas.cern.ch
[2025-04-17 19:10:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-17 19:10:56] 2.11.2.0 2857 133936 122564 144981 1 38 11719074 20275200 1 130560 0 18059193 99.961 7892116 45005 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-17 19:10:56] CVMFS is ok
[2025-04-17 19:10:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-17 19:10:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-17 19:10:56] Further information can be found at the LHC@home message board.
[2025-04-17 19:10:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-17 19:10:56] Checking for apptainer binary...
[2025-04-17 19:10:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-17 19:10:56] Running /usr/bin/apptainer --version
[2025-04-17 19:10:56] apptainer version 1.3.2-1.el7
[2025-04-17 19:10:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-17 19:10:58] c-204-15.aglt2.org
[2025-04-17 19:10:58] apptainer works
[2025-04-17 19:10:58] Set ATHENA_PROC_NUMBER=8
[2025-04-17 19:10:58] Set ATHENA_CORE_NUMBER=8
[2025-04-17 19:10:58] Starting ATLAS job with PandaID=6605316808
[2025-04-17 19:10:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-17 21:27:17]  *** The last 200 lines of the pilot log: ***
[2025-04-17 21:27:17] 2025-04-18 01:26:58,041 | INFO     | intersect: -190805994719.19302
[2025-04-17 21:27:17] 2025-04-18 01:26:58,041 | INFO     | chi2: 5.3288473846867825
[2025-04-17 21:27:17] 2025-04-18 01:26:58,041 | INFO     | current chi2=5.3288473846867825 (change=0.4122100917638128 %)
[2025-04-17 21:27:17] 2025-04-18 01:26:58,041 | INFO     | right removable region: 127
[2025-04-17 21:27:17] 2025-04-18 01:26:58,041 | INFO     | sum of square deviations: 650252192.0
[2025-04-17 21:27:17] 2025-04-18 01:26:58,042 | INFO     | sum of deviations: 41521578881.0
[2025-04-17 21:27:17] 2025-04-18 01:26:58,042 | INFO     | mean x: 1744935682.5
[2025-04-17 21:27:17] 2025-04-18 01:26:58,043 | INFO     | mean y: 2432779.78125
[2025-04-17 21:27:17] 2025-04-18 01:26:58,043 | INFO     | -- intersect: -111419697702.16463
[2025-04-17 21:27:17] 2025-04-18 01:26:58,043 | INFO     | intersect: -111419697702.16463
[2025-04-17 21:27:17] 2025-04-18 01:26:58,043 | INFO     | chi2: 2.7223129468207596
[2025-04-17 21:27:17] 2025-04-18 01:26:58,043 | INFO     | current chi2=2.7223129468207596 (change=49.12424578126807 %)
[2025-04-17 21:27:17] 2025-04-18 01:26:58,044 | INFO     | sum of square deviations: 576985702.0
[2025-04-17 21:27:17] 2025-04-18 01:26:58,044 | INFO     | sum of deviations: 13777575961.000006
[2025-04-17 21:27:17] 2025-04-18 01:26:58,044 | INFO     | mean x: 1744935835.0
[2025-04-17 21:27:17] 2025-04-18 01:26:58,045 | INFO     | mean y: 2490545.4959349595
[2025-04-17 21:27:17] 2025-04-18 01:26:58,045 | INFO     | -- intersect: -41664028972.14624
[2025-04-17 21:27:17] 2025-04-18 01:26:58,045 | INFO     | intersect: -41664028972.14624
[2025-04-17 21:27:17] 2025-04-18 01:26:58,045 | INFO     | chi2: 0.9261848091684601
[2025-04-17 21:27:17] 2025-04-18 01:26:58,045 | INFO     | current chi2=0.9261848091684601 (change=65.97801842546792 %)
[2025-04-17 21:27:17] 2025-04-18 01:26:58,046 | INFO     | sum of square deviations: 509440249.5
[2025-04-17 21:27:17] 2025-04-18 01:26:58,046 | INFO     | sum of deviations: -3281724878.499999
[2025-04-17 21:27:17] 2025-04-18 01:26:58,046 | INFO     | mean x: 1744935987.5
[2025-04-17 21:27:17] 2025-04-18 01:26:58,046 | INFO     | mean y: 2528633.940677966
[2025-04-17 21:27:17] 2025-04-18 01:26:58,047 | INFO     | -- intersect: 11243100707.287846
[2025-04-17 21:27:17] 2025-04-18 01:26:58,047 | INFO     | intersect: 11243100707.287846
[2025-04-17 21:27:17] 2025-04-18 01:26:58,047 | INFO     | chi2: 0.05322417395405972
[2025-04-17 21:27:17] 2025-04-18 01:26:58,047 | INFO     | current chi2=0.05322417395405972 (change=94.25339592841681 %)
[2025-04-17 21:27:17] 2025-04-18 01:26:58,047 | INFO     | sum of square deviations: 447383272.0
[2025-04-17 21:27:17] 2025-04-18 01:26:58,048 | INFO     | sum of deviations: -5760639676.0
[2025-04-17 21:27:17] 2025-04-18 01:26:58,048 | INFO     | mean x: 1744936140.0
[2025-04-17 21:27:17] 2025-04-18 01:26:58,048 | INFO     | mean y: 2534588.0884955754
[2025-04-17 21:27:17] 2025-04-18 01:26:58,048 | INFO     | -- intersect: 22470849764.99187
[2025-04-17 21:27:17] 2025-04-18 01:26:58,048 | INFO     | intersect: 22470849764.99187
[2025-04-17 21:27:17] 2025-04-18 01:26:58,049 | INFO     | chi2: 0.013313632748015253
[2025-04-17 21:27:17] 2025-04-18 01:26:58,049 | INFO     | current chi2=0.013313632748015253 (change=74.98574095390025 %)
[2025-04-17 21:27:17] 2025-04-18 01:26:58,049 | INFO     | sum of square deviations: 390582207.0
[2025-04-17 21:27:17] 2025-04-18 01:26:58,049 | INFO     | sum of deviations: -5525624091.5
[2025-04-17 21:27:17] 2025-04-18 01:26:58,050 | INFO     | mean x: 1744936292.5
[2025-04-17 21:27:17] 2025-04-18 01:26:58,050 | INFO     | mean y: 2533947.8055555555
[2025-04-17 21:27:17] 2025-04-18 01:26:58,050 | INFO     | -- intersect: 24688405047.844402
[2025-04-17 21:27:17] 2025-04-18 01:26:58,050 | INFO     | intersect: 24688405047.844402
[2025-04-17 21:27:17] 2025-04-18 01:26:58,050 | INFO     | chi2: 0.012507209095238246
[2025-04-17 21:27:17] 2025-04-18 01:26:58,050 | INFO     | current chi2=0.012507209095238246 (change=6.057127066969946 %)
[2025-04-17 21:27:17] 2025-04-18 01:26:58,051 | INFO     | left removable region: 50
[2025-04-17 21:27:17] 2025-04-18 01:26:58,051 | INFO     | sum of square deviations: 141539398.0
[2025-04-17 21:27:17] 2025-04-18 01:26:58,051 | INFO     | sum of deviations: -2022780495.9999998
[2025-04-17 21:27:17] 2025-04-18 01:26:58,051 | INFO     | mean x: 1744936872.0
[2025-04-17 21:27:17] 2025-04-18 01:26:58,051 | INFO     | mean y: 2522021.064935065
[2025-04-17 21:27:17] 2025-04-18 01:26:58,051 | INFO     | -- intersect: 24939919814.948784
[2025-04-17 21:27:17] 2025-04-18 01:26:58,052 | INFO     | intersect: 24939919814.948784
[2025-04-17 21:27:17] 2025-04-18 01:26:58,052 | INFO     | chi2: 0.010833521607232156
[2025-04-17 21:27:17] 2025-04-18 01:26:58,052 | INFO     | -- intersect: 24939919814.948784
[2025-04-17 21:27:17] 2025-04-18 01:26:58,052 | INFO     | current memory leak: -14.29 B/s (using 77 data points, chi2=0.01)
[2025-04-17 21:27:17] 2025-04-18 01:26:58,053 | INFO     | ..............................
[2025-04-17 21:27:17] 2025-04-18 01:26:58,053 | INFO     | . Timing measurements:
[2025-04-17 21:27:17] 2025-04-18 01:26:58,053 | INFO     | . get job = 0 s
[2025-04-17 21:27:17] 2025-04-18 01:26:58,053 | INFO     | . initial setup = 1 s
[2025-04-17 21:27:17] 2025-04-18 01:26:58,053 | INFO     | . payload setup = 9 s
[2025-04-17 21:27:17] 2025-04-18 01:26:58,053 | INFO     | . stage-in = 0 s
[2025-04-17 21:27:17] 2025-04-18 01:26:58,053 | INFO     | . payload execution = 8102 s
[2025-04-17 21:27:17] 2025-04-18 01:26:58,053 | INFO     | . stage-out = 2 s
[2025-04-17 21:27:17] 2025-04-18 01:26:58,053 | INFO     | . log creation = 0 s
[2025-04-17 21:27:17] 2025-04-18 01:26:58,054 | INFO     | ..............................
[2025-04-17 21:27:17] 2025-04-18 01:26:58,150 | INFO     | 
[2025-04-17 21:27:17] 2025-04-18 01:26:58,150 | INFO     | job summary report
[2025-04-17 21:27:17] 2025-04-18 01:26:58,150 | INFO     | --------------------------------------------------
[2025-04-17 21:27:17] 2025-04-18 01:26:58,150 | INFO     | PanDA job id: 6605316808
[2025-04-17 21:27:17] 2025-04-18 01:26:58,150 | INFO     | task id: 44075483
[2025-04-17 21:27:17] 2025-04-18 01:26:58,151 | INFO     | errors: (none)
[2025-04-17 21:27:17] 2025-04-18 01:26:58,151 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-17 21:27:17] 2025-04-18 01:26:58,151 | INFO     | pilot state: finished 
[2025-04-17 21:27:17] 2025-04-18 01:26:58,151 | INFO     | transexitcode: 0
[2025-04-17 21:27:17] 2025-04-18 01:26:58,151 | INFO     | exeerrorcode: 0
[2025-04-17 21:27:17] 2025-04-18 01:26:58,151 | INFO     | exeerrordiag: 
[2025-04-17 21:27:17] 2025-04-18 01:26:58,152 | INFO     | exitcode: 0
[2025-04-17 21:27:17] 2025-04-18 01:26:58,152 | INFO     | exitmsg: OK
[2025-04-17 21:27:17] 2025-04-18 01:26:58,152 | INFO     | cpuconsumptiontime: 55282 s
[2025-04-17 21:27:17] 2025-04-18 01:26:58,152 | INFO     | nevents: 400
[2025-04-17 21:27:17] 2025-04-18 01:26:58,152 | INFO     | neventsw: 0
[2025-04-17 21:27:17] 2025-04-18 01:26:58,153 | INFO     | pid: 6067
[2025-04-17 21:27:17] 2025-04-18 01:26:58,153 | INFO     | pgrp: 6067
[2025-04-17 21:27:17] 2025-04-18 01:26:58,153 | INFO     | corecount: 8
[2025-04-17 21:27:17] 2025-04-18 01:26:58,153 | INFO     | event service: False
[2025-04-17 21:27:17] 2025-04-18 01:26:58,153 | INFO     | sizes: {0: 2426594, 1: 2426849, 7: 2427055, 12: 2427083, 8115: 2454648, 8118: 2463589, 8121: 2463773, 8129: 2463943}
[2025-04-17 21:27:17] 2025-04-18 01:26:58,153 | INFO     | --------------------------------------------------
[2025-04-17 21:27:17] 2025-04-18 01:26:58,153 | INFO     | 
[2025-04-17 21:27:17] 2025-04-18 01:26:58,154 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-04-17 21:27:17] 2025-04-18 01:26:58,182 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-17 21:27:17] 2025-04-18 01:26:58,183 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-17 21:27:17] 2025-04-18 01:26:58,183 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-17 21:27:17] 2025-04-18 01:26:58,184 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-17 21:27:17] 2025-04-18 01:26:58,184 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-17 21:27:17] 2025-04-18 01:26:58,184 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-17 21:27:17] 2025-04-18 01:26:58,184 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-17 21:27:17] 2025-04-18 01:26:58,184 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-17 21:27:17] 2025-04-18 01:26:58,184 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-17 21:27:17] 2025-04-18 01:26:58,184 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-17 21:27:17] 2025-04-18 01:26:58,185 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-17 21:27:17] 2025-04-18 01:26:58,185 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-17 21:27:17] 2025-04-18 01:26:58,185 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-17 21:27:17] 2025-04-18 01:26:58,185 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-17 21:27:17] 2025-04-18 01:26:58,185 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-17 21:27:17] 2025-04-18 01:26:58,186 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-17 21:27:17] 2025-04-18 01:26:58,186 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-17 21:27:17] 2025-04-18 01:26:58,186 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-17 21:27:17] 2025-04-18 01:26:58,186 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-17 21:27:17] 2025-04-18 01:26:58,187 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-17 21:27:17] 2025-04-18 01:26:58,187 | INFO     | job 6605316808 has completed (purged errors)
[2025-04-17 21:27:17] 2025-04-18 01:26:58,187 | INFO     | overall cleanup function is called
[2025-04-17 21:27:17] 2025-04-18 01:26:59,195 | INFO     | --- collectZombieJob: --- 10, [6067]
[2025-04-17 21:27:17] 2025-04-18 01:26:59,195 | INFO     | zombie collector waiting for pid 6067
[2025-04-17 21:27:17] 2025-04-18 01:26:59,195 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-17 21:27:17] 2025-04-18 01:26:59,195 | INFO     | collected zombie processes
[2025-04-17 21:27:17] 2025-04-18 01:26:59,196 | INFO     | will attempt to kill all subprocesses of pid=6067
[2025-04-17 21:27:17] 2025-04-18 01:26:59,294 | INFO     | process IDs to be killed: [6067] (in reverse order)
[2025-04-17 21:27:17] 2025-04-18 01:26:59,351 | WARNING  | found no corresponding commands to process id(s)
[2025-04-17 21:27:17] 2025-04-18 01:26:59,351 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-17 21:27:17] 2025-04-18 01:26:59,356 | INFO     | did not find any defunct processes belonging to 6067
[2025-04-17 21:27:17] 2025-04-18 01:26:59,359 | INFO     | did not find any defunct processes belonging to 6067
[2025-04-17 21:27:17] 2025-04-18 01:26:59,360 | INFO     | ready for new job
[2025-04-17 21:27:17] 2025-04-18 01:26:59,360 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-17 21:27:17] 2025-04-18 01:26:59,362 | INFO     | **************************************
[2025-04-17 21:27:17] 2025-04-18 01:26:59,362 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-17 21:27:17] 2025-04-18 01:26:59,362 | INFO     | **************************************
[2025-04-17 21:27:17] 2025-04-18 01:26:59,363 | INFO     | 
[2025-04-17 21:27:17] 2025-04-18 01:26:59,363 | INFO     | architecture information:
[2025-04-17 21:27:17] 2025-04-18 01:26:59,364 | INFO     | executing command: cat /etc/os-release
[2025-04-17 21:27:17] 2025-04-18 01:26:59,380 | INFO     | cat /etc/os-release:
[2025-04-17 21:27:17] NAME="CentOS Linux"
[2025-04-17 21:27:17] VERSION="7 (Core)"
[2025-04-17 21:27:17] ID="centos"
[2025-04-17 21:27:17] ID_LIKE="rhel fedora"
[2025-04-17 21:27:17] VERSION_ID="7"
[2025-04-17 21:27:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-17 21:27:17] ANSI_COLOR="0;31"
[2025-04-17 21:27:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-17 21:27:17] HOME_URL="https://www.centos.org/"
[2025-04-17 21:27:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-17 21:27:17] 
[2025-04-17 21:27:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-17 21:27:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-17 21:27:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-17 21:27:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-17 21:27:17] 
[2025-04-17 21:27:17] 2025-04-18 01:26:59,381 | INFO     | **************************************
[2025-04-17 21:27:17] 2025-04-18 01:26:59,884 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-04-17 21:27:17] 2025-04-18 01:26:59,907 | INFO     | sufficient remaining disk space (18625855488 B)
[2025-04-17 21:27:17] 2025-04-18 01:26:59,908 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-17 21:27:17] 2025-04-18 01:26:59,909 | INFO     | current server update state: UPDATING_FINAL
[2025-04-17 21:27:17] 2025-04-18 01:26:59,909 | INFO     | update_server=False
[2025-04-17 21:27:17] 2025-04-18 01:26:59,910 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-17 21:27:17] 2025-04-18 01:26:59,911 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-17 21:27:17] 2025-04-18 01:26:59,911 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-17 21:27:17] 2025-04-18 01:26:59,912 | INFO     | found 0 job(s) in 20 queues
[2025-04-17 21:27:17] 2025-04-18 01:26:59,912 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-17 21:27:17] 2025-04-18 01:26:59,912 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-17 21:27:17] 2025-04-18 01:27:00,252 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-17 21:27:17] 2025-04-18 01:27:00,273 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-04-17 21:27:17] 2025-04-18 01:27:00,274 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-04-17 21:27:17] 2025-04-18 01:27:00,274 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-17 21:27:17] 2025-04-18 01:27:00,274 | INFO     | will abort loop
[2025-04-17 21:27:17] 2025-04-18 01:27:00,310 | INFO     | all data control threads have been joined
[2025-04-17 21:27:17] 2025-04-18 01:27:00,375 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-17 21:27:17] 2025-04-18 01:27:00,514 | INFO     | all payload control threads have been joined
[2025-04-17 21:27:17] 2025-04-18 01:27:00,916 | INFO     | [job] retrieve thread has finished
[2025-04-17 21:27:17] 2025-04-18 01:27:00,917 | INFO     | [job] queue monitor thread has finished
[2025-04-17 21:27:17] 2025-04-18 01:27:01,101 | INFO     | all job control threads have been joined
[2025-04-17 21:27:17] 2025-04-18 01:27:01,280 | INFO     | [job] job monitor thread has finished
[2025-04-17 21:27:17] 2025-04-18 01:27:01,283 | INFO     | [payload] validate_post thread has finished
[2025-04-17 21:27:17] 2025-04-18 01:27:01,312 | INFO     | [data] control thread has finished
[2025-04-17 21:27:17] 2025-04-18 01:27:01,517 | INFO     | [payload] control thread has finished
[2025-04-17 21:27:17] 2025-04-18 01:27:01,680 | INFO     | [payload] execute_payloads thread has finished
[2025-04-17 21:27:17] 2025-04-18 01:27:01,797 | INFO     | [job] validate thread has finished
[2025-04-17 21:27:17] 2025-04-18 01:27:01,978 | INFO     | [data] copytool_in thread has finished
[2025-04-17 21:27:17] 2025-04-18 01:27:02,105 | INFO     | [job] control thread has finished
[2025-04-17 21:27:17] 2025-04-18 01:27:02,257 | INFO     | [job] create_data_payload thread has finished
[2025-04-17 21:27:17] 2025-04-18 01:27:02,257 | INFO     | [payload] validate_pre thread has finished
[2025-04-17 21:27:17] 2025-04-18 01:27:02,257 | INFO     | [payload] failed_post thread has finished
[2025-04-17 21:27:17] 2025-04-18 01:27:02,258 | INFO     | [data] copytool_out thread has finished
[2025-04-17 21:27:17] 2025-04-18 01:27:04,381 | INFO     | [data] queue_monitor thread has finished
[2025-04-17 21:27:17] 2025-04-18 01:27:10,064 | INFO     | job.realtimelogging is not enabled
[2025-04-17 21:27:17] 2025-04-18 01:27:11,070 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-17 21:27:17] 2025-04-18 01:27:12,592 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140629321500480)>', '<ExcThread(monitor, started 140628293838592)>']
[2025-04-17 21:27:17] 2025-04-18 01:27:12,974 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-17 21:27:17] 2025-04-18 01:27:12,974 | INFO     | [monitor] control thread has ended
[2025-04-17 21:27:17] 2025-04-18 01:27:17,617 | INFO     | all workflow threads have been joined
[2025-04-17 21:27:17] 2025-04-18 01:27:17,617 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-17 21:27:17] 2025-04-18 01:27:17,618 | INFO     | traces error code: 0
[2025-04-17 21:27:17] 2025-04-18 01:27:17,618 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-17 21:27:17] 2025-04-18 01:27:17,728 [wrapper] ==== pilot stdout END ====
[2025-04-17 21:27:17] 2025-04-18 01:27:17,733 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-17 21:27:17] 2025-04-18 01:27:17,737 [wrapper] pilotpid: 31953
[2025-04-17 21:27:17] 2025-04-18 01:27:17,742 [wrapper] Pilot exit status: 0
[2025-04-17 21:27:17] 2025-04-18 01:27:17,759 [wrapper] pandaids: 6605316808 6605316808
[2025-04-17 21:27:17] 2025-04-18 01:27:17,803 [wrapper] cleanup supervisor_pilot  5423 31954
[2025-04-17 21:27:17] 2025-04-18 01:27:17,808 [wrapper] Test setup, not cleaning
[2025-04-17 21:27:17] 2025-04-18 01:27:17,814 [wrapper] apfmon messages muted
[2025-04-17 21:27:17] 2025-04-18 01:27:17,819 [wrapper] ==== wrapper stdout END ====
[2025-04-17 21:27:17] 2025-04-18 01:27:17,824 [wrapper] ==== wrapper stderr END ====
[2025-04-17 21:27:17]  *** Error codes and diagnostics ***
[2025-04-17 21:27:17]     "exeErrorCode": 0,
[2025-04-17 21:27:17]     "exeErrorDiag": "",
[2025-04-17 21:27:17]     "pilotErrorCode": 0,
[2025-04-17 21:27:17]     "pilotErrorDiag": "",
[2025-04-17 21:27:17]  *** Listing of results directory ***
[2025-04-17 21:27:17] total 629828
[2025-04-17 21:27:17] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-04-17 21:27:17] -rw-r--r-- 1 boincer umatlas    495897 Apr 17 08:55 pilot3.tar.gz
[2025-04-17 21:27:17] -rw-r--r-- 1 boincer umatlas      5111 Apr 17 09:04 queuedata.json
[2025-04-17 21:27:17] -rwx------ 1 boincer umatlas     37140 Apr 17 09:05 runpilot2-wrapper.sh
[2025-04-17 21:27:17] -rw-r--r-- 1 boincer umatlas       100 Apr 17 16:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-17 21:27:17] -rwxr-xr-x 1 boincer umatlas      7986 Apr 17 16:57 run_atlas
[2025-04-17 21:27:17] -rw-r--r-- 1 boincer umatlas       105 Apr 17 16:57 job.xml
[2025-04-17 21:27:17] -rw-r--r-- 3 boincer umatlas 222332313 Apr 17 16:57 EVNT.44075481._002181.pool.root.1
[2025-04-17 21:27:17] -rw-r--r-- 3 boincer umatlas 222332313 Apr 17 16:57 ATLAS.root_0
[2025-04-17 21:27:17] -rw-r--r-- 2 boincer umatlas     17569 Apr 17 16:57 start_atlas.sh
[2025-04-17 21:27:17] drwxrwx--x 2 boincer umatlas      4096 Apr 17 16:57 shared
[2025-04-17 21:27:17] -rw-r--r-- 2 boincer umatlas    508892 Apr 17 16:57 input.tar.gz
[2025-04-17 21:27:17] -rw-r--r-- 1 boincer umatlas         0 Apr 17 16:57 boinc_lockfile
[2025-04-17 21:27:17] -rw-r--r-- 1 boincer umatlas      2577 Apr 17 19:10 pandaJob.out
[2025-04-17 21:27:17] -rw------- 1 boincer umatlas       424 Apr 17 19:10 setup.sh.local
[2025-04-17 21:27:17] -rw------- 1 boincer umatlas    990266 Apr 17 19:11 agis_schedconf.cvmfs.json
[2025-04-17 21:27:17] -rw-r--r-- 1 boincer umatlas      5827 Apr 17 21:22 init_data.xml
[2025-04-17 21:27:17] -rw------- 1 boincer umatlas        96 Apr 17 21:26 pilot_heartbeat.json
[2025-04-17 21:27:17] -rw------- 1 boincer umatlas 194282468 Apr 17 21:26 HITS.44075483._056033.pool.root.1
[2025-04-17 21:27:17] -rw-r--r-- 1 boincer umatlas       531 Apr 17 21:26 boinc_task_state.xml
[2025-04-17 21:27:17] -rw------- 1 boincer umatlas      1049 Apr 17 21:26 memory_monitor_summary.json
[2025-04-17 21:27:17] -rw------- 1 boincer umatlas   1618536 Apr 17 21:26 agis_ddmendpoints.agis.ALL.json
[2025-04-17 21:27:17] -rw------- 1 boincer umatlas    325181 Apr 17 21:26 log.44075483._056033.job.log.tgz.1
[2025-04-17 21:27:17] -rw------- 1 boincer umatlas      7750 Apr 17 21:26 heartbeat.json
[2025-04-17 21:27:17] -rw-r--r-- 1 boincer umatlas      8192 Apr 17 21:26 boinc_mmap_file
[2025-04-17 21:27:17] -rw-r--r-- 1 boincer umatlas        29 Apr 17 21:26 wrapper_checkpoint.txt
[2025-04-17 21:27:17] -rw------- 1 boincer umatlas      4734 Apr 17 21:27 pilotlog.txt
[2025-04-17 21:27:17] -rw------- 1 boincer umatlas    744253 Apr 17 21:27 log.44075483._056033.job.log.1
[2025-04-17 21:27:17] -rw------- 1 boincer umatlas       357 Apr 17 21:27 output.list
[2025-04-17 21:27:17] -rw-r--r-- 1 boincer umatlas       620 Apr 17 21:27 runtime_log
[2025-04-17 21:27:17] -rw------- 1 boincer umatlas   1085440 Apr 17 21:27 result.tar.gz
[2025-04-17 21:27:17] -rw-r--r-- 1 boincer umatlas     11098 Apr 17 21:27 runtime_log.err
[2025-04-17 21:27:17] -rw------- 1 boincer umatlas       785 Apr 17 21:27 DNqKDm36dP7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmgzcLDm0KkaPm.diag
[2025-04-17 21:27:17] -rw-r--r-- 1 boincer umatlas     22963 Apr 17 21:27 stderr.txt
[2025-04-17 21:27:17] HITS file was successfully produced:
[2025-04-17 21:27:17] -rw------- 1 boincer umatlas 194282468 Apr 17 21:26 shared/HITS.pool.root.1
[2025-04-17 21:27:17]  *** Contents of shared directory: ***
[2025-04-17 21:27:17] total 408436
[2025-04-17 21:27:17] -rw-r--r-- 3 boincer umatlas 222332313 Apr 17 16:57 ATLAS.root_0
[2025-04-17 21:27:17] -rw-r--r-- 2 boincer umatlas     17569 Apr 17 16:57 start_atlas.sh
[2025-04-17 21:27:17] -rw-r--r-- 2 boincer umatlas    508892 Apr 17 16:57 input.tar.gz
[2025-04-17 21:27:17] -rw------- 1 boincer umatlas 194282468 Apr 17 21:26 HITS.pool.root.1
[2025-04-17 21:27:17] -rw------- 1 boincer umatlas   1085440 Apr 17 21:27 result.tar.gz
21:27:19 (28217): run_atlas exited; CPU time 55227.999922
21:27:19 (28217): called boinc_finish(0)

</stderr_txt>
]]>

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