Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
17:58:38 (32430): wrapper (7.7.26015): starting
17:58:38 (32430): wrapper: running run_atlas (--nthreads 12)
[2025-04-17 17:58:38] Arguments: --nthreads 12
[2025-04-17 17:58:38] Threads: 12
[2025-04-17 17:58:38] Checking for CVMFS
[2025-04-17 17:58:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-17 17:58:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-17 17:58:39] Running cvmfs_config stat atlas.cern.ch
[2025-04-17 17:58:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-17 17:58:39] 2.10.0.0 25418 1273 76084 144981 1 187 8872713 16777217 929 130560 0 2267966 99.995 322106 10374 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-04-17 17:58:39] CVMFS is ok
[2025-04-17 17:58:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-17 17:58:39] Checking for apptainer binary...
[2025-04-17 17:58:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-17 17:58:39] Running /usr/bin/apptainer --version
[2025-04-17 17:58:39] apptainer version 1.3.6-150600.4.9.1
[2025-04-17 17:58:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-17 17:58:39] boinc-runner
[2025-04-17 17:58:39] apptainer works
[2025-04-17 17:58:39] Set ATHENA_PROC_NUMBER=12
[2025-04-17 17:58:39] Set ATHENA_CORE_NUMBER=12
[2025-04-17 17:58:39] Starting ATLAS job with PandaID=6602093975
[2025-04-17 17:58:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/27 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-17 18:33:08]  *** The last 200 lines of the pilot log: ***
[2025-04-17 18:33:08]  guid=3af033a8-9884-4a36-987e-80fd0d81a72a
[2025-04-17 18:33:08]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-04-17 18:33:08]  is_altstaged=None
[2025-04-17 18:33:08]  is_tar=False
[2025-04-17 18:33:08]  lfn=log.44075483._005140.job.log.tgz.1
[2025-04-17 18:33:08]  mtime=0
[2025-04-17 18:33:08]  protocol_id=None
[2025-04-17 18:33:08]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-17 18:33:08]  replicas=None
[2025-04-17 18:33:08]  scope=mc23_13p6TeV
[2025-04-17 18:33:08]  status=None
[2025-04-17 18:33:08]  status_code=0
[2025-04-17 18:33:08]  storage_token=
[2025-04-17 18:33:08]  surl=/var/lib/boinc/slots/27/PanDA_Pilot-6602093975/log.44075483._005140.job.log.tgz.1
[2025-04-17 18:33:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4e/1a/log.44075483._005140.job.log.tgz.1
[2025-04-17 18:33:08]  workdir=None
[2025-04-17 18:33:08] ]
[2025-04-17 18:33:08] 2025-04-17 23:32:43,276 | INFO     | transferring file log.44075483._005140.job.log.tgz.1 from /var/lib/boinc/slots/27/PanDA_Pilot-6602093975/log.44075483._005140.job.log.tgz.1 to /var/lib/boinc/slots
[2025-04-17 18:33:08] 2025-04-17 23:32:43,276 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/27/PanDA_Pilot-6602093975/log.44075483._005140.job.log.tgz.1 /var/lib/boinc/slots/27/log.44075483._005140.j
[2025-04-17 18:33:08] 2025-04-17 23:32:43,286 | INFO     | adding to output.list: log.44075483._005140.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4e/1a/log.44075483._005140.job.log.tg
[2025-04-17 18:33:08] 2025-04-17 23:32:43,286 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-17 18:33:08] 2025-04-17 23:32:43,286 | INFO     | summary of transferred files:
[2025-04-17 18:33:08] 2025-04-17 23:32:43,287 | INFO     |  -- lfn=log.44075483._005140.job.log.tgz.1, status_code=0, status=transferred
[2025-04-17 18:33:08] 2025-04-17 23:32:43,287 | INFO     | stage-out finished correctly
[2025-04-17 18:33:08] 2025-04-17 23:32:43,876 | INFO     | monitor loop #158: job 0:6602093975 is in state 'finished'
[2025-04-17 18:33:08] 2025-04-17 23:32:43,876 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-17 18:33:08] 2025-04-17 23:32:44,334 | INFO     | PID=4269 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-04-17 18:33:08] 2025-04-17 23:32:46,284 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-17 18:33:08] 2025-04-17 23:32:46,316 | INFO     | job 6602093975 has state=finished
[2025-04-17 18:33:08] 2025-04-17 23:32:46,316 | INFO     | preparing for final server update for job 6602093975 in state='finished'
[2025-04-17 18:33:08] 2025-04-17 23:32:46,379 | INFO     | monitor loop #159: job 0:6602093975 is in state 'finished'
[2025-04-17 18:33:08] 2025-04-17 23:32:46,379 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-17 18:33:08] 2025-04-17 23:32:46,596 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-04-17 18:33:08] 2025-04-17 23:32:46,596 | INFO     | this job has now completed (state=finished)
[2025-04-17 18:33:08] 2025-04-17 23:32:46,596 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-17 18:33:08] 2025-04-17 23:32:46,596 | INFO     | log transfer has been attempted: DONE
[2025-04-17 18:33:08] 2025-04-17 23:32:46,596 | INFO     | job 6602093975 has finished - writing final server update
[2025-04-17 18:33:08] 2025-04-17 23:32:46,596 | INFO     | total number of processed events: 400 (read)
[2025-04-17 18:33:08] 2025-04-17 23:32:46,597 | INFO     | executing command: lscpu
[2025-04-17 18:33:08] 2025-04-17 23:32:46,611 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-17 18:33:08] 2025-04-17 23:32:48,283 | INFO     | CPU arch script returned: x86-64-v4
[2025-04-17 18:33:08] 2025-04-17 23:32:48,283 | INFO     | using path: /var/lib/boinc/slots/27/PanDA_Pilot-6602093975/memory_monitor_summary.json (trf name=prmon)
[2025-04-17 18:33:08] 2025-04-17 23:32:48,284 | INFO     | extracted standard info from prmon json
[2025-04-17 18:33:08] 2025-04-17 23:32:48,284 | INFO     | extracted standard memory fields from prmon json
[2025-04-17 18:33:08] 2025-04-17 23:32:48,284 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-17 18:33:08] 2025-04-17 23:32:48,284 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-17 18:33:08] 2025-04-17 23:32:48,284 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-17 18:33:08] 2025-04-17 23:32:48,284 | INFO     | fitting pss+swap vs Time
[2025-04-17 18:33:08] 2025-04-17 23:32:48,285 | INFO     | sum of square deviations: 6094998.0
[2025-04-17 18:33:08] 2025-04-17 23:32:48,285 | INFO     | sum of deviations: 2234042833.000001
[2025-04-17 18:33:08] 2025-04-17 23:32:48,285 | INFO     | mean x: 1744931844.0
[2025-04-17 18:33:08] 2025-04-17 23:32:48,285 | INFO     | mean y: 2646216.962962963
[2025-04-17 18:33:08] 2025-04-17 23:32:48,285 | INFO     | -- intersect: -639579594853.7766
[2025-04-17 18:33:08] 2025-04-17 23:32:48,285 | INFO     | intersect: -639579594853.7766
[2025-04-17 18:33:08] 2025-04-17 23:32:48,285 | INFO     | chi2: 0.6941418939443623
[2025-04-17 18:33:08] 2025-04-17 23:32:48,285 | INFO     | -- intersect: -639579594853.7766
[2025-04-17 18:33:08] 2025-04-17 23:32:48,285 | INFO     | current memory leak: 366.54 B/s (using 27 data points, chi2=0.69)
[2025-04-17 18:33:08] 2025-04-17 23:32:48,285 | INFO     | ..............................
[2025-04-17 18:33:08] 2025-04-17 23:32:48,285 | INFO     | . Timing measurements:
[2025-04-17 18:33:08] 2025-04-17 23:32:48,285 | INFO     | . get job = 0 s
[2025-04-17 18:33:08] 2025-04-17 23:32:48,285 | INFO     | . initial setup = 2 s
[2025-04-17 18:33:08] 2025-04-17 23:32:48,285 | INFO     | . payload setup = 2 s
[2025-04-17 18:33:08] 2025-04-17 23:32:48,285 | INFO     | . stage-in = 0 s
[2025-04-17 18:33:08] 2025-04-17 23:32:48,285 | INFO     | . payload execution = 2016 s
[2025-04-17 18:33:08] 2025-04-17 23:32:48,285 | INFO     | . stage-out = 0 s
[2025-04-17 18:33:08] 2025-04-17 23:32:48,285 | INFO     | . log creation = 0 s
[2025-04-17 18:33:08] 2025-04-17 23:32:48,285 | INFO     | ..............................
[2025-04-17 18:33:08] 2025-04-17 23:32:48,316 | INFO     | 
[2025-04-17 18:33:08] 2025-04-17 23:32:48,316 | INFO     | job summary report
[2025-04-17 18:33:08] 2025-04-17 23:32:48,316 | INFO     | --------------------------------------------------
[2025-04-17 18:33:08] 2025-04-17 23:32:48,316 | INFO     | PanDA job id: 6602093975
[2025-04-17 18:33:08] 2025-04-17 23:32:48,316 | INFO     | task id: 44075483
[2025-04-17 18:33:08] 2025-04-17 23:32:48,316 | INFO     | errors: (none)
[2025-04-17 18:33:08] 2025-04-17 23:32:48,316 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-17 18:33:08] 2025-04-17 23:32:48,317 | INFO     | pilot state: finished 
[2025-04-17 18:33:08] 2025-04-17 23:32:48,317 | INFO     | transexitcode: 0
[2025-04-17 18:33:08] 2025-04-17 23:32:48,317 | INFO     | exeerrorcode: 0
[2025-04-17 18:33:08] 2025-04-17 23:32:48,317 | INFO     | exeerrordiag: 
[2025-04-17 18:33:08] 2025-04-17 23:32:48,317 | INFO     | exitcode: 0
[2025-04-17 18:33:08] 2025-04-17 23:32:48,317 | INFO     | exitmsg: OK
[2025-04-17 18:33:08] 2025-04-17 23:32:48,317 | INFO     | cpuconsumptiontime: 17939 s
[2025-04-17 18:33:08] 2025-04-17 23:32:48,317 | INFO     | nevents: 400
[2025-04-17 18:33:08] 2025-04-17 23:32:48,317 | INFO     | neventsw: 0
[2025-04-17 18:33:08] 2025-04-17 23:32:48,317 | INFO     | pid: 11159
[2025-04-17 18:33:08] 2025-04-17 23:32:48,317 | INFO     | pgrp: 11159
[2025-04-17 18:33:08] 2025-04-17 23:32:48,317 | INFO     | corecount: 12
[2025-04-17 18:33:08] 2025-04-17 23:32:48,317 | INFO     | event service: False
[2025-04-17 18:33:08] 2025-04-17 23:32:48,317 | INFO     | sizes: {0: 2426766, 2: 2426972, 11: 2427000, 2022: 2460940, 2025: 2460940, 2027: 2461110}
[2025-04-17 18:33:08] 2025-04-17 23:32:48,317 | INFO     | --------------------------------------------------
[2025-04-17 18:33:08] 2025-04-17 23:32:48,318 | INFO     | 
[2025-04-17 18:33:08] 2025-04-17 23:32:48,318 | INFO     | executing command: ls -lF /var/lib/boinc/slots/27
[2025-04-17 18:33:08] 2025-04-17 23:32:48,326 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-17 18:33:08] 2025-04-17 23:32:48,326 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-17 18:33:08] 2025-04-17 23:32:48,327 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-17 18:33:08] 2025-04-17 23:32:48,327 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-17 18:33:08] 2025-04-17 23:32:48,327 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-17 18:33:08] 2025-04-17 23:32:48,327 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-17 18:33:08] 2025-04-17 23:32:48,327 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-17 18:33:08] 2025-04-17 23:32:48,327 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-17 18:33:08] 2025-04-17 23:32:48,327 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-17 18:33:08] 2025-04-17 23:32:48,327 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-17 18:33:08] 2025-04-17 23:32:48,327 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-17 18:33:08] 2025-04-17 23:32:48,327 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-17 18:33:08] 2025-04-17 23:32:48,327 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-17 18:33:08] 2025-04-17 23:32:48,327 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-17 18:33:08] 2025-04-17 23:32:48,327 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-17 18:33:08] 2025-04-17 23:32:48,327 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-17 18:33:08] 2025-04-17 23:32:48,327 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-17 18:33:08] 2025-04-17 23:32:48,327 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-17 18:33:08] 2025-04-17 23:32:48,327 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-17 18:33:08] 2025-04-17 23:32:48,327 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-17 18:33:08] 2025-04-17 23:32:48,327 | INFO     | job 6602093975 has completed (purged errors)
[2025-04-17 18:33:08] 2025-04-17 23:32:48,327 | INFO     | overall cleanup function is called
[2025-04-17 18:33:08] 2025-04-17 23:32:49,333 | INFO     | --- collectZombieJob: --- 10, [11159]
[2025-04-17 18:33:08] 2025-04-17 23:32:49,333 | INFO     | zombie collector waiting for pid 11159
[2025-04-17 18:33:08] 2025-04-17 23:32:49,333 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-17 18:33:08] 2025-04-17 23:32:49,333 | INFO     | collected zombie processes
[2025-04-17 18:33:08] 2025-04-17 23:32:49,333 | INFO     | will attempt to kill all subprocesses of pid=11159
[2025-04-17 18:33:08] 2025-04-17 23:32:49,370 | INFO     | process IDs to be killed: [11159] (in reverse order)
[2025-04-17 18:33:08] 2025-04-17 23:32:49,392 | WARNING  | found no corresponding commands to process id(s)
[2025-04-17 18:33:08] 2025-04-17 23:32:49,392 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-17 18:33:08] 2025-04-17 23:32:49,393 | INFO     | did not find any defunct processes belonging to 11159
[2025-04-17 18:33:08] 2025-04-17 23:32:49,394 | INFO     | did not find any defunct processes belonging to 11159
[2025-04-17 18:33:08] 2025-04-17 23:32:49,394 | INFO     | ready for new job
[2025-04-17 18:33:08] 2025-04-17 23:32:49,394 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-17 18:33:08] 2025-04-17 23:32:49,395 | INFO     | **************************************
[2025-04-17 18:33:08] 2025-04-17 23:32:49,395 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-17 18:33:08] 2025-04-17 23:32:49,395 | INFO     | **************************************
[2025-04-17 18:33:08] 2025-04-17 23:32:49,395 | INFO     | 
[2025-04-17 18:33:08] 2025-04-17 23:32:49,396 | INFO     | architecture information:
[2025-04-17 18:33:08] 2025-04-17 23:32:49,396 | INFO     | executing command: cat /etc/os-release
[2025-04-17 18:33:08] 2025-04-17 23:32:49,402 | INFO     | cat /etc/os-release:
[2025-04-17 18:33:08] NAME="CentOS Linux"
[2025-04-17 18:33:08] VERSION="7 (Core)"
[2025-04-17 18:33:08] ID="centos"
[2025-04-17 18:33:08] ID_LIKE="rhel fedora"
[2025-04-17 18:33:08] VERSION_ID="7"
[2025-04-17 18:33:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-17 18:33:08] ANSI_COLOR="0;31"
[2025-04-17 18:33:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-17 18:33:08] HOME_URL="https://www.centos.org/"
[2025-04-17 18:33:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-17 18:33:08] 
[2025-04-17 18:33:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-17 18:33:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-17 18:33:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-17 18:33:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-17 18:33:08] 
[2025-04-17 18:33:08] 2025-04-17 23:32:49,402 | INFO     | **************************************
[2025-04-17 18:33:08] 2025-04-17 23:32:49,905 | INFO     | executing command: df -mP /var/lib/boinc/slots/27
[2025-04-17 18:33:08] 2025-04-17 23:32:49,912 | INFO     | sufficient remaining disk space (3891438551040 B)
[2025-04-17 18:33:08] 2025-04-17 23:32:49,912 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-17 18:33:08] 2025-04-17 23:32:49,912 | INFO     | current server update state: UPDATING_FINAL
[2025-04-17 18:33:08] 2025-04-17 23:32:49,912 | INFO     | update_server=False
[2025-04-17 18:33:08] 2025-04-17 23:32:49,912 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-17 18:33:08] 2025-04-17 23:32:49,912 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-17 18:33:08] 2025-04-17 23:32:49,912 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-17 18:33:08] 2025-04-17 23:32:49,912 | INFO     | aborting loop
[2025-04-17 18:33:08] 2025-04-17 23:32:50,065 | INFO     | all payload control threads have been joined
[2025-04-17 18:33:08] 2025-04-17 23:32:50,229 | INFO     | all data control threads have been joined
[2025-04-17 18:33:08] 2025-04-17 23:32:50,345 | INFO     | found 0 job(s) in 20 queues
[2025-04-17 18:33:08] 2025-04-17 23:32:50,345 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-17 18:33:08] 2025-04-17 23:32:50,345 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-17 18:33:08] 2025-04-17 23:32:50,732 | INFO     | all job control threads have been joined
[2025-04-17 18:33:08] 2025-04-17 23:32:50,913 | INFO     | [job] job monitor thread has finished
[2025-04-17 18:33:08] 2025-04-17 23:32:50,913 | INFO     | [job] retrieve thread has finished
[2025-04-17 18:33:08] 2025-04-17 23:32:50,917 | INFO     | [job] queue monitor thread has finished
[2025-04-17 18:33:08] 2025-04-17 23:32:51,069 | INFO     | [payload] control thread has finished
[2025-04-17 18:33:08] 2025-04-17 23:32:51,235 | INFO     | [data] control thread has finished
[2025-04-17 18:33:08] 2025-04-17 23:32:51,328 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-17 18:33:08] 2025-04-17 23:32:51,345 | INFO     | [payload] failed_post thread has finished
[2025-04-17 18:33:08] 2025-04-17 23:32:51,445 | INFO     | [payload] execute_payloads thread has finished
[2025-04-17 18:33:08] 2025-04-17 23:32:51,557 | INFO     | [job] validate thread has finished
[2025-04-17 18:33:08] 2025-04-17 23:32:51,737 | INFO     | [job] control thread has finished
[2025-04-17 18:33:08] 2025-04-17 23:32:51,893 | INFO     | [payload] validate_pre thread has finished
[2025-04-17 18:33:08] 2025-04-17 23:32:51,973 | INFO     | [payload] validate_post thread has finished
[2025-04-17 18:33:08] 2025-04-17 23:32:52,025 | INFO     | [job] create_data_payload thread has finished
[2025-04-17 18:33:08] 2025-04-17 23:32:52,273 | INFO     | [data] copytool_in thread has finished
[2025-04-17 18:33:08] 2025-04-17 23:32:52,320 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-17 18:33:08] 2025-04-17 23:32:53,333 | INFO     | [data] copytool_out thread has finished
[2025-04-17 18:33:08] 2025-04-17 23:32:56,325 | INFO     | [data] queue_monitor thread has finished
[2025-04-17 18:33:08] 2025-04-17 23:33:00,277 | INFO     | job.realtimelogging is not enabled
[2025-04-17 18:33:08] 2025-04-17 23:33:01,281 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-17 18:33:08] 2025-04-17 23:33:02,938 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140376022906688)>', '<ExcThread(monitor, started 140375528285952)>']
[2025-04-17 18:33:08] 2025-04-17 23:33:03,397 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-17 18:33:08] 2025-04-17 23:33:03,397 | INFO     | [monitor] control thread has ended
[2025-04-17 18:33:08] 2025-04-17 23:33:07,963 | INFO     | all workflow threads have been joined
[2025-04-17 18:33:08] 2025-04-17 23:33:07,963 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-17 18:33:08] 2025-04-17 23:33:07,963 | INFO     | traces error code: 0
[2025-04-17 18:33:08] 2025-04-17 23:33:07,964 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-17 18:33:08] 2025-04-17 23:33:08,009 [wrapper] ==== pilot stdout END ====
[2025-04-17 18:33:08] 2025-04-17 23:33:08,010 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-17 18:33:08] 2025-04-17 23:33:08,011 [wrapper] pilotpid: 4269
[2025-04-17 18:33:08] 2025-04-17 23:33:08,012 [wrapper] Pilot exit status: 0
[2025-04-17 18:33:08] 2025-04-17 23:33:08,020 [wrapper] pandaids: 6602093975
[2025-04-17 18:33:08] 2025-04-17 23:33:08,034 [wrapper] cleanup supervisor_pilot  8599 4270
[2025-04-17 18:33:08] 2025-04-17 23:33:08,035 [wrapper] Test setup, not cleaning
[2025-04-17 18:33:08] 2025-04-17 23:33:08,036 [wrapper] apfmon messages muted
[2025-04-17 18:33:08] 2025-04-17 23:33:08,037 [wrapper] ==== wrapper stdout END ====
[2025-04-17 18:33:08] 2025-04-17 23:33:08,038 [wrapper] ==== wrapper stderr END ====
[2025-04-17 18:33:08]  *** Error codes and diagnostics ***
[2025-04-17 18:33:08]     "exeErrorCode": 0,
[2025-04-17 18:33:08]     "exeErrorDiag": "",
[2025-04-17 18:33:08]     "pilotErrorCode": 0,
[2025-04-17 18:33:08]     "pilotErrorDiag": "",
[2025-04-17 18:33:08]  *** Listing of results directory ***
[2025-04-17 18:33:08] total 410872
[2025-04-17 18:33:08] -rw-r--r-- 1 boinc boinc    495897 Apr 13 08:20 pilot3.tar.gz
[2025-04-17 18:33:08] -rwx------ 1 boinc boinc     37140 Apr 13 08:49 runpilot2-wrapper.sh
[2025-04-17 18:33:08] -rw-r--r-- 1 boinc boinc      5111 Apr 13 08:49 queuedata.json
[2025-04-17 18:33:08] -rw-r--r-- 1 boinc boinc       100 Apr 17 17:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-17 18:33:08] -rwxr-xr-x 1 boinc boinc      7986 Apr 17 17:58 run_atlas
[2025-04-17 18:33:08] -rw-r--r-- 1 boinc boinc       105 Apr 17 17:58 job.xml
[2025-04-17 18:33:08] -rw-r--r-- 2 boinc boinc 223579029 Apr 17 17:58 EVNT.44075481._000198.pool.root.1
[2025-04-17 18:33:08] -rw-r--r-- 2 boinc boinc     17569 Apr 17 17:58 start_atlas.sh
[2025-04-17 18:33:08] drwxrwx--x 1 boinc boinc        76 Apr 17 17:58 shared
[2025-04-17 18:33:08] -rw-r--r-- 2 boinc boinc    508886 Apr 17 17:58 input.tar.gz
[2025-04-17 18:33:08] -rw-r--r-- 1 boinc boinc     10045 Apr 17 17:58 init_data.xml
[2025-04-17 18:33:08] -rw-r--r-- 1 boinc boinc         0 Apr 17 17:58 boinc_lockfile
[2025-04-17 18:33:08] -rw-r--r-- 1 boinc boinc      2574 Apr 17 17:58 pandaJob.out
[2025-04-17 18:33:08] -rw------- 1 boinc boinc       473 Apr 17 17:58 setup.sh.local
[2025-04-17 18:33:08] -rw------- 1 boinc boinc    990266 Apr 17 17:58 agis_schedconf.cvmfs.json
[2025-04-17 18:33:08] -rw------- 1 boinc boinc   1618536 Apr 17 17:58 agis_ddmendpoints.agis.ALL.json
[2025-04-17 18:33:08] drwx------ 1 boinc boinc       368 Apr 17 17:58 pilot3
[2025-04-17 18:33:08] -rw------- 1 boinc boinc        95 Apr 17 18:31 pilot_heartbeat.json
[2025-04-17 18:33:08] -rw------- 1 boinc boinc 192192063 Apr 17 18:32 HITS.44075483._005140.pool.root.1
[2025-04-17 18:33:08] -rw-r--r-- 1 boinc boinc       529 Apr 17 18:32 boinc_task_state.xml
[2025-04-17 18:33:08] -rw------- 1 boinc boinc      1026 Apr 17 18:32 memory_monitor_summary.json
[2025-04-17 18:33:08] -rw------- 1 boinc boinc    324276 Apr 17 18:32 log.44075483._005140.job.log.tgz.1
[2025-04-17 18:33:08] -rw------- 1 boinc boinc      7680 Apr 17 18:32 heartbeat.json
[2025-04-17 18:33:08] -rw-r--r-- 1 boinc boinc        27 Apr 17 18:32 wrapper_checkpoint.txt
[2025-04-17 18:33:08] -rw-r--r-- 1 boinc boinc      8192 Apr 17 18:32 boinc_mmap_file
[2025-04-17 18:33:08] -rw------- 1 boinc boinc      4428 Apr 17 18:33 pilotlog.txt
[2025-04-17 18:33:08] -rw------- 1 boinc boinc    233896 Apr 17 18:33 log.44075483._005140.job.log.1
[2025-04-17 18:33:08] -rw-r--r-- 1 boinc boinc       620 Apr 17 18:33 runtime_log
[2025-04-17 18:33:08] -rw------- 1 boinc boinc    573440 Apr 17 18:33 result.tar.gz
[2025-04-17 18:33:08] -rw------- 1 boinc boinc       357 Apr 17 18:33 output.list
[2025-04-17 18:33:08] -rw------- 1 boinc boinc       652 Apr 17 18:33 XL5LDmItCO7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmY2TLDm7NBNLn.diag
[2025-04-17 18:33:08] -rw-r--r-- 1 boinc boinc     11496 Apr 17 18:33 runtime_log.err
[2025-04-17 18:33:08] -rw-r--r-- 1 boinc boinc     21028 Apr 17 18:33 stderr.txt
[2025-04-17 18:33:08] HITS file was successfully produced:
[2025-04-17 18:33:08] -rw------- 1 boinc boinc 192192063 Apr 17 18:32 shared/HITS.pool.root.1
[2025-04-17 18:33:08]  *** Contents of shared directory: ***
[2025-04-17 18:33:08] total 407108
[2025-04-17 18:33:08] -rw-r--r-- 2 boinc boinc 223579029 Apr 17 17:58 ATLAS.root_0
[2025-04-17 18:33:08] -rw-r--r-- 2 boinc boinc     17569 Apr 17 17:58 start_atlas.sh
[2025-04-17 18:33:08] -rw-r--r-- 2 boinc boinc    508886 Apr 17 17:58 input.tar.gz
[2025-04-17 18:33:08] -rw------- 1 boinc boinc 192192063 Apr 17 18:32 HITS.pool.root.1
[2025-04-17 18:33:08] -rw------- 1 boinc boinc    573440 Apr 17 18:33 result.tar.gz
18:33:09 (32430): run_atlas exited; CPU time 17949.461686
18:33:09 (32430): called boinc_finish(0)

</stderr_txt>
]]>

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