Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:44:00 (3319784): wrapper (7.7.26015): starting
12:44:00 (3319784): wrapper: running run_atlas (--nthreads 4)
[2025-04-19 12:44:00] Arguments: --nthreads 4
[2025-04-19 12:44:00] Threads: 4
[2025-04-19 12:44:00] Checking for CVMFS
[2025-04-19 12:44:00] No cvmfs_config command found, will try listing directly
[2025-04-19 12:44:00] CVMFS is ok
[2025-04-19 12:44:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-19 12:44:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-19 12:44:00] Further information can be found at the LHC@home message board.
[2025-04-19 12:44:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-19 12:44:00] Checking for apptainer binary...
[2025-04-19 12:44:00] which: no apptainer in ((null))
[2025-04-19 12:44:00] apptainer is not installed, using version from CVMFS
[2025-04-19 12:44:00] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-19 12:44:00] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot52/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut02.grid.cesnet.cz
[2025-04-19 12:44:00] apptainer works
[2025-04-19 12:44:00] Set ATHENA_PROC_NUMBER=4
[2025-04-19 12:44:00] Set ATHENA_CORE_NUMBER=4
[2025-04-19 12:44:00] Starting ATLAS job with PandaID=6605556086
[2025-04-19 12:44:00] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot52/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-19 15:27:48]  *** The last 200 lines of the pilot log: ***
[2025-04-19 15:27:48] 2025-04-19 13:27:32,761 | INFO     | chi2: 4.061951576140127
[2025-04-19 15:27:48] 2025-04-19 13:27:32,762 | INFO     | sum of square deviations: 1177156955.0
[2025-04-19 15:27:48] 2025-04-19 13:27:32,763 | INFO     | sum of deviations: 51291093173.00001
[2025-04-19 15:27:48] 2025-04-19 13:27:32,763 | INFO     | mean x: 1745064203.5
[2025-04-19 15:27:48] 2025-04-19 13:27:32,763 | INFO     | mean y: 2268569.371794872
[2025-04-19 15:27:48] 2025-04-19 13:27:32,763 | INFO     | -- intersect: -76033684218.74689
[2025-04-19 15:27:48] 2025-04-19 13:27:32,763 | INFO     | intersect: -76033684218.74689
[2025-04-19 15:27:48] 2025-04-19 13:27:32,763 | INFO     | chi2: 3.384134523423957
[2025-04-19 15:27:48] 2025-04-19 13:27:32,764 | INFO     | current chi2=3.384134523423957 (change=16.686980137765858 %)
[2025-04-19 15:27:48] 2025-04-19 13:27:32,764 | INFO     | right removable region: 155
[2025-04-19 15:27:48] 2025-04-19 13:27:32,764 | INFO     | sum of square deviations: 1177156955.0
[2025-04-19 15:27:48] 2025-04-19 13:27:32,765 | INFO     | sum of deviations: 10042447446.000002
[2025-04-19 15:27:48] 2025-04-19 13:27:32,765 | INFO     | mean x: 1745064508.5
[2025-04-19 15:27:48] 2025-04-19 13:27:32,765 | INFO     | mean y: 2302184.8205128205
[2025-04-19 15:27:48] 2025-04-19 13:27:32,765 | INFO     | -- intersect: -14885023198.642115
[2025-04-19 15:27:48] 2025-04-19 13:27:32,765 | INFO     | intersect: -14885023198.642115
[2025-04-19 15:27:48] 2025-04-19 13:27:32,766 | INFO     | chi2: 1.9007936002805192
[2025-04-19 15:27:48] 2025-04-19 13:27:32,766 | INFO     | current chi2=1.9007936002805192 (change=53.20491727558333 %)
[2025-04-19 15:27:48] 2025-04-19 13:27:32,766 | INFO     | sum of square deviations: 1067554900.0
[2025-04-19 15:27:48] 2025-04-19 13:27:32,767 | INFO     | sum of deviations: -14611196349.0
[2025-04-19 15:27:48] 2025-04-19 13:27:32,767 | INFO     | mean x: 1745064661.0
[2025-04-19 15:27:48] 2025-04-19 13:27:32,767 | INFO     | mean y: 2336494.3112582783
[2025-04-19 15:27:48] 2025-04-19 13:27:32,767 | INFO     | -- intersect: 23886337592.120953
[2025-04-19 15:27:48] 2025-04-19 13:27:32,767 | INFO     | intersect: 23886337592.120953
[2025-04-19 15:27:48] 2025-04-19 13:27:32,768 | INFO     | chi2: 0.8271333274906483
[2025-04-19 15:27:48] 2025-04-19 13:27:32,768 | INFO     | current chi2=0.8271333274906483 (change=56.48484257477614 %)
[2025-04-19 15:27:48] 2025-04-19 13:27:32,768 | INFO     | sum of square deviations: 964976232.5
[2025-04-19 15:27:48] 2025-04-19 13:27:32,769 | INFO     | sum of deviations: -16393866052.500004
[2025-04-19 15:27:48] 2025-04-19 13:27:32,769 | INFO     | mean x: 1745064813.5
[2025-04-19 15:27:48] 2025-04-19 13:27:32,769 | INFO     | mean y: 2339044.0890410957
[2025-04-19 15:27:48] 2025-04-19 13:27:32,769 | INFO     | -- intersect: 29649036902.47376
[2025-04-19 15:27:48] 2025-04-19 13:27:32,770 | INFO     | intersect: 29649036902.47376
[2025-04-19 15:27:48] 2025-04-19 13:27:32,770 | INFO     | chi2: 0.7865834710598112
[2025-04-19 15:27:48] 2025-04-19 13:27:32,770 | INFO     | current chi2=0.7865834710598112 (change=4.902457086798446 %)
[2025-04-19 15:27:48] 2025-04-19 13:27:32,770 | INFO     | left removable region: 30
[2025-04-19 15:27:48] 2025-04-19 13:27:32,770 | INFO     | sum of square deviations: 605592750.0
[2025-04-19 15:27:48] 2025-04-19 13:27:32,771 | INFO     | sum of deviations: 1356548926.9999998
[2025-04-19 15:27:48] 2025-04-19 13:27:32,771 | INFO     | mean x: 1745065088.0
[2025-04-19 15:27:48] 2025-04-19 13:27:32,771 | INFO     | mean y: 2336929.048
[2025-04-19 15:27:48] 2025-04-19 13:27:32,772 | INFO     | -- intersect: -3906669862.5154066
[2025-04-19 15:27:48] 2025-04-19 13:27:32,772 | INFO     | intersect: -3906669862.5154066
[2025-04-19 15:27:48] 2025-04-19 13:27:32,772 | INFO     | sufficient remaining disk space (672907919360 B)
[2025-04-19 15:27:48] 2025-04-19 13:27:32,772 | INFO     | chi2: 0.0009703131863424632
[2025-04-19 15:27:48] 2025-04-19 13:27:32,773 | INFO     | -- intersect: -3906669862.5154066
[2025-04-19 15:27:48] 2025-04-19 13:27:32,773 | INFO     | current memory leak: 2.24 B/s (using 125 data points, chi2=0.00)
[2025-04-19 15:27:48] 2025-04-19 13:27:32,773 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-04-19 15:27:48] 2025-04-19 13:27:32,774 | INFO     | ..............................
[2025-04-19 15:27:48] 2025-04-19 13:27:32,774 | INFO     | . Timing measurements:
[2025-04-19 15:27:48] 2025-04-19 13:27:32,774 | INFO     | . get job = 0 s
[2025-04-19 15:27:48] 2025-04-19 13:27:32,775 | INFO     | . initial setup = 1 s
[2025-04-19 15:27:48] 2025-04-19 13:27:32,775 | INFO     | . payload setup = 5 s
[2025-04-19 15:27:48] 2025-04-19 13:27:32,775 | INFO     | . stage-in = 0 s
[2025-04-19 15:27:48] 2025-04-19 13:27:32,775 | INFO     | . payload execution = 9770 s
[2025-04-19 15:27:48] 2025-04-19 13:27:32,775 | INFO     | . stage-out = 0 s
[2025-04-19 15:27:48] 2025-04-19 13:27:32,775 | INFO     | . log creation = 0 s
[2025-04-19 15:27:48] 2025-04-19 13:27:32,775 | INFO     | ..............................
[2025-04-19 15:27:48] 2025-04-19 13:27:32,854 | INFO     | size of work directory /scratch/boinc/var/slot52/slots/0/PanDA_Pilot-6605556086: 2289735 B (within 2537553920 B limit)
[2025-04-19 15:27:48] 2025-04-19 13:27:32,882 | INFO     | pfn file=/scratch/boinc/var/slot52/slots/0/PanDA_Pilot-6605556086/HITS.44075483._057102.pool.root.1 does not exist (skip from workdir size calculation)
[2025-04-19 15:27:48] 2025-04-19 13:27:32,882 | INFO     | 
[2025-04-19 15:27:48] 2025-04-19 13:27:32,882 | INFO     | total size of present files: 0 B (workdir size: 2289735 B)
[2025-04-19 15:27:48] 2025-04-19 13:27:32,883 | INFO     | job summary report
[2025-04-19 15:27:48] 2025-04-19 13:27:32,883 | INFO     | --------------------------------------------------
[2025-04-19 15:27:48] 2025-04-19 13:27:32,883 | INFO     | PanDA job id: 6605556086
[2025-04-19 15:27:48] 2025-04-19 13:27:32,883 | INFO     | task id: 44075483
[2025-04-19 15:27:48] 2025-04-19 13:27:32,883 | INFO     | errors: (none)
[2025-04-19 15:27:48] 2025-04-19 13:27:32,883 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-19 15:27:48] 2025-04-19 13:27:32,883 | INFO     | pilot state: finished 
[2025-04-19 15:27:48] 2025-04-19 13:27:32,883 | INFO     | transexitcode: 0
[2025-04-19 15:27:48] 2025-04-19 13:27:32,883 | INFO     | exeerrorcode: 0
[2025-04-19 15:27:48] 2025-04-19 13:27:32,883 | INFO     | exeerrordiag: 
[2025-04-19 15:27:48] 2025-04-19 13:27:32,884 | INFO     | exitcode: 0
[2025-04-19 15:27:48] 2025-04-19 13:27:32,884 | INFO     | exitmsg: OK
[2025-04-19 15:27:48] 2025-04-19 13:27:32,884 | INFO     | cpuconsumptiontime: 35592 s
[2025-04-19 15:27:48] 2025-04-19 13:27:32,884 | INFO     | nevents: 400
[2025-04-19 15:27:48] 2025-04-19 13:27:32,884 | INFO     | neventsw: 0
[2025-04-19 15:27:48] 2025-04-19 13:27:32,884 | INFO     | pid: 3330438
[2025-04-19 15:27:48] 2025-04-19 13:27:32,884 | INFO     | pgrp: 3330438
[2025-04-19 15:27:48] 2025-04-19 13:27:32,884 | INFO     | corecount: 4
[2025-04-19 15:27:48] 2025-04-19 13:27:32,884 | INFO     | event service: False
[2025-04-19 15:27:48] 2025-04-19 13:27:32,884 | INFO     | sizes: {0: 2426668, 1: 2426810, 5: 2427016, 11: 2427072, 9779: 2455486, 9781: 2464633, 9787: 2464747}
[2025-04-19 15:27:48] 2025-04-19 13:27:32,884 | INFO     | --------------------------------------------------
[2025-04-19 15:27:48] 2025-04-19 13:27:32,884 | INFO     | 
[2025-04-19 15:27:48] 2025-04-19 13:27:32,885 | INFO     | executing command: ls -lF /scratch/boinc/var/slot52/slots/0
[2025-04-19 15:27:48] 2025-04-19 13:27:32,885 | INFO     | output file size check: skipping output file /scratch/boinc/var/slot52/slots/0/PanDA_Pilot-6605556086/HITS.44075483._057102.pool.root.1 since it does not exist
[2025-04-19 15:27:48] 2025-04-19 13:27:32,904 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-19 15:27:48] 2025-04-19 13:27:32,905 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-19 15:27:48] 2025-04-19 13:27:32,905 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-19 15:27:48] 2025-04-19 13:27:32,905 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-19 15:27:48] 2025-04-19 13:27:32,905 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-19 15:27:48] 2025-04-19 13:27:32,905 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-19 15:27:48] 2025-04-19 13:27:32,905 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-19 15:27:48] 2025-04-19 13:27:32,906 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-19 15:27:48] 2025-04-19 13:27:32,906 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-19 15:27:48] 2025-04-19 13:27:32,906 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-19 15:27:48] 2025-04-19 13:27:32,906 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-19 15:27:48] 2025-04-19 13:27:32,906 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-19 15:27:48] 2025-04-19 13:27:32,906 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-19 15:27:48] 2025-04-19 13:27:32,906 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-19 15:27:48] 2025-04-19 13:27:32,906 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-19 15:27:48] 2025-04-19 13:27:32,906 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-19 15:27:48] 2025-04-19 13:27:32,906 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-19 15:27:48] 2025-04-19 13:27:32,906 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-19 15:27:48] 2025-04-19 13:27:32,907 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-19 15:27:48] 2025-04-19 13:27:32,907 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-19 15:27:48] 2025-04-19 13:27:32,907 | INFO     | job 6605556086 has completed (purged errors)
[2025-04-19 15:27:48] 2025-04-19 13:27:32,907 | INFO     | overall cleanup function is called
[2025-04-19 15:27:48] 2025-04-19 13:27:33,200 | INFO     | number of running child processes to parent process 3330438: 1
[2025-04-19 15:27:48] 2025-04-19 13:27:33,200 | INFO     | maximum number of monitored processes: 6
[2025-04-19 15:27:48] 2025-04-19 13:27:33,200 | INFO     | aborting job monitoring since job object (job id=6605556086) has expired
[2025-04-19 15:27:48] 2025-04-19 13:27:33,914 | INFO     | --- collectZombieJob: --- 10, [3330438]
[2025-04-19 15:27:48] 2025-04-19 13:27:33,914 | INFO     | zombie collector waiting for pid 3330438
[2025-04-19 15:27:48] 2025-04-19 13:27:33,914 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-19 15:27:48] 2025-04-19 13:27:33,914 | INFO     | collected zombie processes
[2025-04-19 15:27:48] 2025-04-19 13:27:33,915 | INFO     | will attempt to kill all subprocesses of pid=3330438
[2025-04-19 15:27:48] 2025-04-19 13:27:34,765 | INFO     | process IDs to be killed: [3330438] (in reverse order)
[2025-04-19 15:27:48] 2025-04-19 13:27:34,813 | INFO     | PID=3323487 has CPU usage=15.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-04-19 15:27:48] 2025-04-19 13:27:34,814 | INFO     | .. there are 10 such processes running
[2025-04-19 15:27:48] 2025-04-19 13:27:34,869 | WARNING  | found no corresponding commands to process id(s)
[2025-04-19 15:27:48] 2025-04-19 13:27:34,869 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-19 15:27:48] 2025-04-19 13:27:34,881 | INFO     | did not find any defunct processes belonging to 3330438
[2025-04-19 15:27:48] 2025-04-19 13:27:34,894 | INFO     | did not find any defunct processes belonging to 3330438
[2025-04-19 15:27:48] 2025-04-19 13:27:34,894 | INFO     | ready for new job
[2025-04-19 15:27:48] 2025-04-19 13:27:34,895 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-19 15:27:48] 2025-04-19 13:27:34,899 | INFO     | **************************************
[2025-04-19 15:27:48] 2025-04-19 13:27:34,900 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-19 15:27:48] 2025-04-19 13:27:34,900 | INFO     | **************************************
[2025-04-19 15:27:48] 2025-04-19 13:27:34,900 | INFO     | 
[2025-04-19 15:27:48] 2025-04-19 13:27:34,905 | INFO     | architecture information:
[2025-04-19 15:27:48] 2025-04-19 13:27:34,905 | INFO     | executing command: cat /etc/os-release
[2025-04-19 15:27:48] 2025-04-19 13:27:34,921 | INFO     | cat /etc/os-release:
[2025-04-19 15:27:48] NAME="CentOS Linux"
[2025-04-19 15:27:48] VERSION="7 (Core)"
[2025-04-19 15:27:48] ID="centos"
[2025-04-19 15:27:48] ID_LIKE="rhel fedora"
[2025-04-19 15:27:48] VERSION_ID="7"
[2025-04-19 15:27:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-19 15:27:48] ANSI_COLOR="0;31"
[2025-04-19 15:27:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-19 15:27:48] HOME_URL="https://www.centos.org/"
[2025-04-19 15:27:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-19 15:27:48] 
[2025-04-19 15:27:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-19 15:27:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-19 15:27:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-19 15:27:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-19 15:27:48] 
[2025-04-19 15:27:48] 2025-04-19 13:27:34,921 | INFO     | **************************************
[2025-04-19 15:27:48] 2025-04-19 13:27:35,425 | INFO     | executing command: df -mP /scratch/boinc/var/slot52/slots/0
[2025-04-19 15:27:48] 2025-04-19 13:27:35,440 | INFO     | sufficient remaining disk space (672908967936 B)
[2025-04-19 15:27:48] 2025-04-19 13:27:35,441 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-19 15:27:48] 2025-04-19 13:27:35,441 | INFO     | current server update state: UPDATING_FINAL
[2025-04-19 15:27:48] 2025-04-19 13:27:35,441 | INFO     | update_server=False
[2025-04-19 15:27:48] 2025-04-19 13:27:35,441 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-19 15:27:48] 2025-04-19 13:27:35,442 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-19 15:27:48] 2025-04-19 13:27:35,442 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-19 15:27:48] 2025-04-19 13:27:35,443 | INFO     | found 0 job(s) in 20 queues
[2025-04-19 15:27:48] 2025-04-19 13:27:35,443 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-19 15:27:48] 2025-04-19 13:27:35,443 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-19 15:27:48] 2025-04-19 13:27:35,703 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-04-19 15:27:48] 2025-04-19 13:27:35,703 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-04-19 15:27:48] 2025-04-19 13:27:35,703 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-19 15:27:48] 2025-04-19 13:27:35,704 | INFO     | will abort loop
[2025-04-19 15:27:48] 2025-04-19 13:27:36,155 | INFO     | all job control threads have been joined
[2025-04-19 15:27:48] 2025-04-19 13:27:36,156 | INFO     | all data control threads have been joined
[2025-04-19 15:27:48] 2025-04-19 13:27:36,447 | INFO     | [job] retrieve thread has finished
[2025-04-19 15:27:48] 2025-04-19 13:27:36,523 | INFO     | [job] create_data_payload thread has finished
[2025-04-19 15:27:48] 2025-04-19 13:27:36,621 | INFO     | [payload] validate_pre thread has finished
[2025-04-19 15:27:48] 2025-04-19 13:27:36,657 | INFO     | all payload control threads have been joined
[2025-04-19 15:27:48] 2025-04-19 13:27:36,709 | INFO     | [job] job monitor thread has finished
[2025-04-19 15:27:48] 2025-04-19 13:27:37,131 | INFO     | [payload] validate_post thread has finished
[2025-04-19 15:27:48] 2025-04-19 13:27:37,159 | INFO     | [data] control thread has finished
[2025-04-19 15:27:48] 2025-04-19 13:27:37,160 | INFO     | [job] control thread has finished
[2025-04-19 15:27:48] 2025-04-19 13:27:37,279 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-19 15:27:48] 2025-04-19 13:27:37,365 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-19 15:27:48] 2025-04-19 13:27:37,443 | INFO     | [data] copytool_out thread has finished
[2025-04-19 15:27:48] 2025-04-19 13:27:37,560 | INFO     | [job] validate thread has finished
[2025-04-19 15:27:48] 2025-04-19 13:27:37,663 | INFO     | [payload] control thread has finished
[2025-04-19 15:27:48] 2025-04-19 13:27:37,663 | INFO     | [payload] failed_post thread has finished
[2025-04-19 15:27:48] 2025-04-19 13:27:37,813 | INFO     | [payload] execute_payloads thread has finished
[2025-04-19 15:27:48] 2025-04-19 13:27:37,844 | INFO     | [data] copytool_in thread has finished
[2025-04-19 15:27:48] 2025-04-19 13:27:37,892 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-19 15:27:48] 2025-04-19 13:27:38,898 | INFO     | [job] queue monitor thread has finished
[2025-04-19 15:27:48] 2025-04-19 13:27:41,370 | INFO     | [data] queue_monitor thread has finished
[2025-04-19 15:27:48] 2025-04-19 13:27:42,735 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22694253197120)>', '<ExcThread(monitor, started 22694013662976)>']
[2025-04-19 15:27:48] 2025-04-19 13:27:43,476 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-19 15:27:48] 2025-04-19 13:27:43,476 | INFO     | [monitor] control thread has ended
[2025-04-19 15:27:48] 2025-04-19 13:27:47,743 | INFO     | all workflow threads have been joined
[2025-04-19 15:27:48] 2025-04-19 13:27:47,744 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-19 15:27:48] 2025-04-19 13:27:47,744 | INFO     | traces error code: 0
[2025-04-19 15:27:48] 2025-04-19 13:27:47,744 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-19 15:27:48] 2025-04-19 13:27:47,891 [wrapper] ==== pilot stdout END ====
[2025-04-19 15:27:48] 2025-04-19 13:27:47,894 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-19 15:27:48] 2025-04-19 13:27:47,897 [wrapper] pilotpid: 3323487
[2025-04-19 15:27:48] 2025-04-19 13:27:47,900 [wrapper] Pilot exit status: 0
[2025-04-19 15:27:48] 2025-04-19 13:27:47,910 [wrapper] pandaids: 6605556086
[2025-04-19 15:27:48] 2025-04-19 13:27:47,968 [wrapper] cleanup supervisor_pilot 3822361 3323488
[2025-04-19 15:27:48] 2025-04-19 13:27:47,971 [wrapper] Test setup, not cleaning
[2025-04-19 15:27:48] 2025-04-19 13:27:47,974 [wrapper] apfmon messages muted
[2025-04-19 15:27:48] 2025-04-19 13:27:47,977 [wrapper] ==== wrapper stdout END ====
[2025-04-19 15:27:48] 2025-04-19 13:27:47,979 [wrapper] ==== wrapper stderr END ====
[2025-04-19 15:27:48]  *** Error codes and diagnostics ***
[2025-04-19 15:27:48]     "exeErrorCode": 0,
[2025-04-19 15:27:48]     "exeErrorDiag": "",
[2025-04-19 15:27:48]     "pilotErrorCode": 0,
[2025-04-19 15:27:48]     "pilotErrorDiag": "",
[2025-04-19 15:27:48]  *** Listing of results directory ***
[2025-04-19 15:27:48] total 421568
[2025-04-19 15:27:48] -rw-r--r-- 1 boinc boinc    495897 Apr 17 16:57 pilot3.tar.gz
[2025-04-19 15:27:48] -rw-r--r-- 1 boinc boinc      5111 Apr 17 16:59 queuedata.json
[2025-04-19 15:27:48] -rwx------ 1 boinc boinc     37140 Apr 17 17:00 runpilot2-wrapper.sh
[2025-04-19 15:27:48] -rw-r--r-- 1 boinc boinc       100 Apr 19 12:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-19 15:27:48] -rwxr-xr-x 1 boinc boinc      7986 Apr 19 12:43 run_atlas
[2025-04-19 15:27:48] -rw-r--r-- 1 boinc boinc       105 Apr 19 12:43 job.xml
[2025-04-19 15:27:48] -rw-r--r-- 2 boinc boinc 226153793 Apr 19 12:44 EVNT.44075481._002221.pool.root.1
[2025-04-19 15:27:48] -rw-r--r-- 1 boinc boinc      6634 Apr 19 12:44 init_data.xml
[2025-04-19 15:27:48] -rw-r--r-- 2 boinc boinc     17569 Apr 19 12:44 start_atlas.sh
[2025-04-19 15:27:48] drwxrwx--x 2 boinc boinc      4096 Apr 19 12:44 shared
[2025-04-19 15:27:48] -rw-r--r-- 2 boinc boinc    508883 Apr 19 12:44 input.tar.gz
[2025-04-19 15:27:48] -rw-r--r-- 1 boinc boinc         0 Apr 19 12:44 boinc_lockfile
[2025-04-19 15:27:48] -rw-r--r-- 1 boinc boinc      2577 Apr 19 12:44 pandaJob.out
[2025-04-19 15:27:48] -rw------- 1 boinc boinc       424 Apr 19 12:44 setup.sh.local
[2025-04-19 15:27:48] -rw------- 1 boinc boinc    991292 Apr 19 12:44 agis_schedconf.cvmfs.json
[2025-04-19 15:27:48] -rw------- 1 boinc boinc   1618536 Apr 19 12:44 agis_ddmendpoints.agis.ALL.json
[2025-04-19 15:27:48] drwx------ 4 boinc boinc      4096 Apr 19 12:44 pilot3
[2025-04-19 15:27:48] -rw------- 1 boinc boinc 199224289 Apr 19 15:26 HITS.44075483._057102.pool.root.1
[2025-04-19 15:27:48] -rw-r--r-- 1 boinc boinc       529 Apr 19 15:27 boinc_task_state.xml
[2025-04-19 15:27:48] -rw------- 1 boinc boinc        95 Apr 19 15:27 pilot_heartbeat.json
[2025-04-19 15:27:48] -rw------- 1 boinc boinc      1047 Apr 19 15:27 memory_monitor_summary.json
[2025-04-19 15:27:48] -rw------- 1 boinc boinc    282616 Apr 19 15:27 log.44075483._057102.job.log.tgz.1
[2025-04-19 15:27:48] -rw------- 1 boinc boinc      7721 Apr 19 15:27 heartbeat.json
[2025-04-19 15:27:48] -rw-r--r-- 1 boinc boinc      8192 Apr 19 15:27 boinc_mmap_file
[2025-04-19 15:27:48] -rw-r--r-- 1 boinc boinc        27 Apr 19 15:27 wrapper_checkpoint.txt
[2025-04-19 15:27:48] -rw------- 1 boinc boinc      4672 Apr 19 15:27 pilotlog.txt
[2025-04-19 15:27:48] -rw------- 1 boinc boinc    938348 Apr 19 15:27 log.44075483._057102.job.log.1
[2025-04-19 15:27:48] -rw------- 1 boinc boinc       357 Apr 19 15:27 output.list
[2025-04-19 15:27:48] -rw-r--r-- 1 boinc boinc       620 Apr 19 15:27 runtime_log
[2025-04-19 15:27:48] -rw------- 1 boinc boinc   1239040 Apr 19 15:27 result.tar.gz
[2025-04-19 15:27:48] -rw-r--r-- 1 boinc boinc     11423 Apr 19 15:27 runtime_log.err
[2025-04-19 15:27:48] -rw------- 1 boinc boinc       662 Apr 19 15:27 JqcLDm9tfP7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmcAdLDm2nNxYn.diag
[2025-04-19 15:27:48] -rw-r--r-- 1 boinc boinc     21217 Apr 19 15:27 stderr.txt
[2025-04-19 15:27:48] HITS file was successfully produced:
[2025-04-19 15:27:48] -rw------- 1 boinc boinc 199224289 Apr 19 15:26 shared/HITS.pool.root.1
[2025-04-19 15:27:48]  *** Contents of shared directory: ***
[2025-04-19 15:27:48] total 417148
[2025-04-19 15:27:48] -rw-r--r-- 2 boinc boinc 226153793 Apr 19 12:44 ATLAS.root_0
[2025-04-19 15:27:48] -rw-r--r-- 2 boinc boinc     17569 Apr 19 12:44 start_atlas.sh
[2025-04-19 15:27:48] -rw-r--r-- 2 boinc boinc    508883 Apr 19 12:44 input.tar.gz
[2025-04-19 15:27:48] -rw------- 1 boinc boinc 199224289 Apr 19 15:26 HITS.pool.root.1
[2025-04-19 15:27:48] -rw------- 1 boinc boinc   1239040 Apr 19 15:27 result.tar.gz
15:27:49 (3319784): run_atlas exited; CPU time 35931.944689
15:27:49 (3319784): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN