Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-18 11:37:47 (8832): Detected: vboxwrapper 26206
2025-04-18 11:37:47 (8832): Detected: BOINC client v8.0.2
2025-04-18 11:37:47 (8832): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-04-18 11:37:48 (8832): Successfully copied 'init_data.xml' to the shared directory.
2025-04-18 11:37:48 (8832): Create VM. (boinc_690a67a51dc358e9, slot#0)
2025-04-18 11:37:49 (8832): Setting Memory Size for VM. (4400MB)
2025-04-18 11:37:49 (8832): Setting CPU Count for VM. (4)
2025-04-18 11:37:49 (8832): Setting Chipset Options for VM.
2025-04-18 11:37:50 (8832): Setting Graphics Controller Options for VM.
2025-04-18 11:37:50 (8832): Setting Boot Options for VM.
2025-04-18 11:37:50 (8832): Setting Network Configuration for NAT.
2025-04-18 11:37:50 (8832): Enabling VM Network Access.
2025-04-18 11:37:51 (8832): Disabling USB Support for VM.
2025-04-18 11:37:51 (8832): Disabling COM Port Support for VM.
2025-04-18 11:37:51 (8832): Disabling LPT Port Support for VM.
2025-04-18 11:37:51 (8832): Disabling Audio Support for VM.
2025-04-18 11:37:52 (8832): Disabling Clipboard Support for VM.
2025-04-18 11:37:52 (8832): Disabling Drag and Drop Support for VM.
2025-04-18 11:37:52 (8832): Adding storage controller(s) to VM.
2025-04-18 11:37:52 (8832): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-18 11:37:55 (8832): Adding VirtualBox Guest Additions to VM.
2025-04-18 11:37:56 (8832): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-18 11:37:56 (8832): forwarding host port 61089 to guest port 80
2025-04-18 11:37:56 (8832): Enabling remote desktop for VM.
2025-04-18 11:37:56 (8832): Required extension pack not installed, remote desktop not enabled.
2025-04-18 11:37:56 (8832): Enabling shared directory for VM.
2025-04-18 11:37:57 (8832): Starting VM using VBoxManage interface. (boinc_690a67a51dc358e9, slot#0)
2025-04-18 11:38:03 (8832): Successfully started VM. (PID = '5648')
2025-04-18 11:38:03 (8832): Reporting VM Process ID to BOINC.
2025-04-18 11:38:03 (8832): Guest Log: BIOS: VirtualBox 7.1.6
2025-04-18 11:38:03 (8832): Guest Log: CPUID EDX: 0x178bfbff
2025-04-18 11:38:03 (8832): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-18 11:38:03 (8832): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-18 11:38:03 (8832): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-18 11:38:03 (8832): Detected: Web Application Enabled (http://localhost:61089)
2025-04-18 11:38:03 (8832): Preference change detected
2025-04-18 11:38:03 (8832): Setting CPU throttle for VM. (100%)
2025-04-18 11:38:03 (8832): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-18 11:38:05 (8832): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-18 11:38:05 (8832): Guest Log: BIOS: Booting from Hard Disk...
2025-04-18 11:38:08 (8832): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-18 11:38:08 (8832): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-18 11:38:08 (8832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-18 11:38:08 (8832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-18 11:38:08 (8832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-18 11:38:08 (8832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-18 11:38:08 (8832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-18 11:38:08 (8832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-18 11:38:08 (8832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-18 11:38:08 (8832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-18 11:38:08 (8832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-18 11:38:08 (8832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-18 11:38:08 (8832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-18 11:38:08 (8832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-18 11:38:08 (8832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-18 11:38:08 (8832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-18 11:38:08 (8832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-18 11:38:08 (8832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-18 11:38:08 (8832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-18 11:38:08 (8832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-18 11:38:08 (8832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-18 11:38:08 (8832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-18 11:38:08 (8832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-18 11:38:08 (8832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-18 11:38:08 (8832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-18 11:38:08 (8832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-18 11:38:08 (8832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-18 11:38:08 (8832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-18 11:38:08 (8832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-18 11:38:08 (8832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-18 11:38:08 (8832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-18 11:38:08 (8832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-18 11:38:16 (8832): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-18 11:38:16 (8832): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-18 11:38:24 (8832): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-18 11:38:24 (8832): Guest Log: 00:00:00.000199 main     Log opened 2025-04-18T11:38:23.122181000Z
2025-04-18 11:38:24 (8832): Guest Log: 00:00:00.000320 main     OS Product: Linux
2025-04-18 11:38:24 (8832): Guest Log: 00:00:00.000363 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-18 11:38:24 (8832): Guest Log: 00:00:00.000402 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-18 11:38:24 (8832): Guest Log: 00:00:00.000441 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-18 11:38:24 (8832): Guest Log: 00:00:00.000442 main     Process ID: 1310
2025-04-18 11:38:24 (8832): Guest Log: 00:00:00.000444 main     Package type: LINUX_64BITS_GENERIC
2025-04-18 11:38:24 (8832): Guest Log: 00:00:00.001956 main     5.2.32 r132073 started. Verbose level = 0
2025-04-18 11:38:24 (8832): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-18 11:38:24 (8832): Guest Log: [INFO] Mounting shared directory
2025-04-18 11:38:24 (8832): Guest Log: [INFO] Checking for init_data.xml
2025-04-18 11:38:30 (8832): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-18 11:38:30 (8832): Guest Log: [INFO] Detected branch: prod
2025-04-18 11:38:30 (8832): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-18 11:38:30 (8832): Guest Log: Copying input files
2025-04-18 11:38:32 (8832): Guest Log: Copied input files into RunAtlas.
2025-04-18 11:38:32 (8832): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-18 11:38:32 (8832): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-18 11:38:32 (8832): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-18 11:38:32 (8832): Guest Log: Further information can be found at the LHC@home message board.
2025-04-18 11:38:34 (8832): Guest Log: 00:00:10.005313 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 189 263 990 000ns (GuestNow=1 744 969 113 861 596 000 ns GuestLast=1 744 976 303 125 586 000 ns fSetTimeLastLoop=true )
2025-04-18 11:38:42 (8832): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-18 11:38:42 (8832): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-18 11:38:42 (8832): Guest Log: 2.6.3.0 1587 0 30156 144997 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-18 11:38:44 (8832): Guest Log: copied the webapp to /var/www
2025-04-18 11:38:44 (8832): Guest Log: ATHENA_PROC_NUMBER=4
2025-04-18 11:38:44 (8832): Guest Log: ATHENA_CORE_NUMBER=4
2025-04-18 11:38:44 (8832): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-18 11:38:44 (8832): Guest Log:  *** Starting ATLAS job. (PandaID=6605318785 taskID=44075483) ***
2025-04-18 13:22:38 (8832): Status Report: Elapsed Time: '6000.942951'
2025-04-18 13:22:38 (8832): Status Report: CPU Time: '19479.703125'
2025-04-18 15:07:26 (8832): Status Report: Elapsed Time: '12001.228954'
2025-04-18 15:07:26 (8832): Status Report: CPU Time: '44378.156250'
2025-04-18 16:52:00 (8832): Status Report: Elapsed Time: '18002.346411'
2025-04-18 16:52:00 (8832): Status Report: CPU Time: '69213.234375'
2025-04-18 17:09:51 (8832): Guest Log:  *** Job finished ***
2025-04-18 17:09:51 (8832): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-18 17:09:51 (8832): Guest Log: 2025-04-18 15:09:41,062 | INFO     | [job] validate thread has finished
2025-04-18 17:09:51 (8832): Guest Log: 2025-04-18 15:09:41,598 | INFO     | [data] copytool_out thread has finished
2025-04-18 17:09:51 (8832): Guest Log: 2025-04-18 15:09:43,860 | INFO     | [data] queue_monitor thread has finished
2025-04-18 17:09:51 (8832): Guest Log: 2025-04-18 15:09:44,370 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140520529725248)>', '<ExcThread(monitor, started 140519703303936)>']
2025-04-18 17:09:51 (8832): Guest Log: 2025-04-18 15:09:45,167 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-18 17:09:51 (8832): Guest Log: 2025-04-18 15:09:45,168 | INFO     | [monitor] control thread has ended
2025-04-18 17:09:51 (8832): Guest Log: 2025-04-18 15:09:49,404 | INFO     | all workflow threads have been joined
2025-04-18 17:09:51 (8832): Guest Log: 2025-04-18 15:09:49,404 | INFO     | end of generic workflow (traces error code: 0)
2025-04-18 17:09:51 (8832): Guest Log: 2025-04-18 15:09:49,405 | INFO     | traces error code: 0
2025-04-18 17:09:51 (8832): Guest Log: 2025-04-18 15:09:49,406 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-18 17:09:51 (8832): Guest Log: 2025-04-18 15:09:49,536 [wrapper] ==== pilot stdout END ====
2025-04-18 17:09:51 (8832): Guest Log: 2025-04-18 15:09:49,541 [wrapper] ==== wrapper stdout RESUME ====
2025-04-18 17:09:51 (8832): Guest Log: 2025-04-18 15:09:49,546 [wrapper] pilotpid: 5914
2025-04-18 17:09:51 (8832): Guest Log: 2025-04-18 15:09:49,551 [wrapper] Pilot exit status: 0
2025-04-18 17:09:51 (8832): Guest Log: 2025-04-18 15:09:49,866 [wrapper] pandaids: 6605318785
2025-04-18 17:09:51 (8832): Guest Log: 2025-04-18 15:09:49,925 [wrapper] cleanup supervisor_pilot 21413 5915
2025-04-18 17:09:51 (8832): Guest Log: 2025-04-18 15:09:49,930 [wrapper] Test setup, not cleaning
2025-04-18 17:09:51 (8832): Guest Log: 2025-04-18 15:09:49,935 [wrapper] apfmon messages muted
2025-04-18 17:09:51 (8832): Guest Log: 2025-04-18 15:09:49,940 [wrapper] ==== wrapper stdout END ====
2025-04-18 17:09:51 (8832): Guest Log: 2025-04-18 15:09:49,945 [wrapper] ==== wrapper stderr END ====
2025-04-18 17:09:51 (8832): Guest Log:  *** Error codes and diagnostics ***
2025-04-18 17:09:51 (8832): Guest Log:     "exeErrorCode": 0,
2025-04-18 17:09:51 (8832): Guest Log:     "exeErrorDiag": "",
2025-04-18 17:09:51 (8832): Guest Log:     "pilotErrorCode": 0,
2025-04-18 17:09:51 (8832): Guest Log:     "pilotErrorDiag": "",
2025-04-18 17:09:51 (8832): Guest Log:  *** Listing of results directory ***
2025-04-18 17:09:51 (8832): Guest Log: total 199136
2025-04-18 17:09:51 (8832): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 17 14:05 pilot3.tar.gz
2025-04-18 17:09:51 (8832): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 17 14:10 runpilot2-wrapper.sh
2025-04-18 17:09:51 (8832): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 17 14:10 queuedata.json
2025-04-18 17:09:51 (8832): Guest Log: -rwxr-xr-x. 1 atlas atlas     13234 Apr 18 09:38 init_data.xml
2025-04-18 17:09:51 (8832): Guest Log: -rwxr-xr-x. 1 atlas atlas    508887 Apr 18 09:38 input.tar.gz
2025-04-18 17:09:51 (8832): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 18 09:38 start_atlas.sh
2025-04-18 17:09:51 (8832): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 18 09:38 EVNT.44075481._002205.pool.root.1 -> /data/./ATLAS.root_0
2025-04-18 17:09:51 (8832): Guest Log: -rw-r--r--. 1 atlas atlas      2579 Apr 18 09:38 pandaJob.out
2025-04-18 17:09:51 (8832): Guest Log: -rw-------. 1 atlas atlas       424 Apr 18 09:38 setup.sh.local
2025-04-18 17:09:51 (8832): Guest Log: -rw-------. 1 atlas atlas    990242 Apr 18 09:40 agis_schedconf.cvmfs.json
2025-04-18 17:09:51 (8832): Guest Log: drwx------. 4 atlas atlas      4096 Apr 18 09:40 pilot3
2025-04-18 17:09:51 (8832): Guest Log: -rw-------. 1 atlas atlas 196109939 Apr 18 15:08 HITS.44075483._056638.pool.root.1
2025-04-18 17:09:51 (8832): Guest Log: -rw-------. 1 atlas atlas        95 Apr 18 15:08 pilot_heartbeat.json
2025-04-18 17:09:51 (8832): Guest Log: -rw-------. 1 atlas atlas      1032 Apr 18 15:09 memory_monitor_summary.json
2025-04-18 17:09:51 (8832): Guest Log: -rw-------. 1 atlas atlas   1618536 Apr 18 15:09 agis_ddmendpoints.agis.ALL.json
2025-04-18 17:09:51 (8832): Guest Log: -rw-------. 1 atlas atlas    365668 Apr 18 15:09 log.44075483._056638.job.log.tgz.1
2025-04-18 17:09:51 (8832): Guest Log: -rw-------. 1 atlas atlas      7687 Apr 18 15:09 heartbeat.json
2025-04-18 17:09:51 (8832): Guest Log: -rw-------. 1 atlas atlas      4599 Apr 18 15:09 pilotlog.txt
2025-04-18 17:09:51 (8832): Guest Log: -rw-------. 1 atlas atlas   1635844 Apr 18 15:09 log.44075483._056638.job.log.1
2025-04-18 17:09:51 (8832): Guest Log: -rw-------. 1 atlas atlas       357 Apr 18 15:09 output.list
2025-04-18 17:09:51 (8832): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 18 15:09 runtime_log
2025-04-18 17:09:51 (8832): Guest Log: -rw-------. 1 atlas atlas   2017280 Apr 18 15:09 result.tar.gz
2025-04-18 17:09:51 (8832): Guest Log: -rw-r--r--. 1 atlas atlas     10920 Apr 18 15:09 runtime_log.err
2025-04-18 17:09:51 (8832): Guest Log: -rw-------. 1 atlas atlas       654 Apr 18 15:09 Jg7LDm67eP7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmS5cLDmmN7Pgm.diag
2025-04-18 17:09:51 (8832): Guest Log: Looking for outputfile HITS.44075483._056638.pool.root.1
2025-04-18 17:09:51 (8832): Guest Log: HITS file was successfully produced
2025-04-18 17:09:51 (8832): Guest Log: -rw-------. 1 atlas atlas 196109939 Apr 18 15:08 /home/atlas/RunAtlas/HITS.44075483._056638.pool.root.1
2025-04-18 17:09:52 (8832): Guest Log: Successfully finished the ATLAS job!
2025-04-18 17:09:52 (8832): Guest Log: Copying the results back to the shared directory!
2025-04-18 17:09:52 (8832): Guest Log:  *** Contents of shared directory: ***
2025-04-18 17:09:52 (8832): Guest Log: total 412260
2025-04-18 17:09:52 (8832): Guest Log: -rwxrwxrwx. 1 root root 223473160 Apr 18 09:37 ATLAS.root_0
2025-04-18 17:09:52 (8832): Guest Log: -rwxrwxrwx. 1 root root 196109939 Apr 18 15:09 HITS.pool.root.1
2025-04-18 17:09:52 (8832): Guest Log: -rwxrwxrwx. 1 root root     13234 Apr 18 09:37 init_data.xml
2025-04-18 17:09:52 (8832): Guest Log: -rwxrwxrwx. 1 root root    508887 Apr 17 17:40 input.tar.gz
2025-04-18 17:09:52 (8832): Guest Log: -rwxrwxrwx. 1 root root   2017280 Apr 18 15:09 result.tar.gz
2025-04-18 17:09:52 (8832): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 17 17:40 start_atlas.sh
2025-04-18 17:09:52 (8832): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-18 17:09:52 (8832): VM Completion File Detected.
2025-04-18 17:09:52 (8832): Powering off VM.
2025-04-18 17:09:53 (8832): Successfully stopped VM.
2025-04-18 17:09:53 (8832): Deregistering VM. (boinc_690a67a51dc358e9, slot#0)
2025-04-18 17:09:53 (8832): Removing network bandwidth throttle group from VM.
2025-04-18 17:09:53 (8832): Removing VM from VirtualBox.
17:09:59 (8832): called boinc_finish(0)

</stderr_txt>
]]>

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