Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
15:21:15 (30922): wrapper (7.7.26015): starting
15:21:15 (30922): wrapper: running run_atlas (--nthreads 12)
[2025-04-17 15:21:15] Arguments: --nthreads 12
[2025-04-17 15:21:15] Threads: 12
[2025-04-17 15:21:15] Checking for CVMFS
[2025-04-17 15:21:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-17 15:21:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-17 15:21:15] Running cvmfs_config stat atlas.cern.ch
[2025-04-17 15:21:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-17 15:21:15] 2.10.0.0 25418 1116 73140 144977 2 17 8712397 16777216 929 130560 0 1913585 99.995 248284 8862 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-04-17 15:21:15] CVMFS is ok
[2025-04-17 15:21:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-17 15:21:15] Checking for apptainer binary...
[2025-04-17 15:21:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-17 15:21:15] Running /usr/bin/apptainer --version
[2025-04-17 15:21:15] apptainer version 1.3.6-150600.4.9.1
[2025-04-17 15:21:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-17 15:21:15] boinc-runner
[2025-04-17 15:21:15] apptainer works
[2025-04-17 15:21:15] Set ATHENA_PROC_NUMBER=12
[2025-04-17 15:21:15] Set ATHENA_CORE_NUMBER=12
[2025-04-17 15:21:15] Starting ATLAS job with PandaID=6605316793
[2025-04-17 15:21:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/28 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-17 15:58:14]  *** The last 200 lines of the pilot log: ***
[2025-04-17 15:58:14]  is_tar=False
[2025-04-17 15:58:14]  lfn=log.44075483._056018.job.log.tgz.1
[2025-04-17 15:58:14]  mtime=0
[2025-04-17 15:58:14]  protocol_id=None
[2025-04-17 15:58:14]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-17 15:58:14]  replicas=None
[2025-04-17 15:58:14]  scope=mc23_13p6TeV
[2025-04-17 15:58:14]  status=None
[2025-04-17 15:58:14]  status_code=0
[2025-04-17 15:58:14]  storage_token=
[2025-04-17 15:58:14]  surl=/var/lib/boinc/slots/28/PanDA_Pilot-6605316793/log.44075483._056018.job.log.tgz.1
[2025-04-17 15:58:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/42/6b/log.44075483._056018.job.log.tgz.1
[2025-04-17 15:58:14]  workdir=None
[2025-04-17 15:58:14] ]
[2025-04-17 15:58:14] 2025-04-17 20:57:47,122 | INFO     | transferring file log.44075483._056018.job.log.tgz.1 from /var/lib/boinc/slots/28/PanDA_Pilot-6605316793/log.44075483._056018.job.log.tgz.1 to /var/lib/boinc/slots
[2025-04-17 15:58:14] 2025-04-17 20:57:47,122 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/28/PanDA_Pilot-6605316793/log.44075483._056018.job.log.tgz.1 /var/lib/boinc/slots/28/log.44075483._056018.j
[2025-04-17 15:58:14] 2025-04-17 20:57:47,132 | INFO     | adding to output.list: log.44075483._056018.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/42/6b/log.44075483._056018.job.log.tg
[2025-04-17 15:58:14] 2025-04-17 20:57:47,132 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-17 15:58:14] 2025-04-17 20:57:47,132 | INFO     | summary of transferred files:
[2025-04-17 15:58:14] 2025-04-17 20:57:47,132 | INFO     |  -- lfn=log.44075483._056018.job.log.tgz.1, status_code=0, status=transferred
[2025-04-17 15:58:14] 2025-04-17 20:57:47,132 | INFO     | stage-out finished correctly
[2025-04-17 15:58:14] 2025-04-17 20:57:49,017 | INFO     | monitor loop #171: job 0:6605316793 is in state 'finished'
[2025-04-17 15:58:14] 2025-04-17 20:57:49,017 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-17 15:58:14] 2025-04-17 20:57:49,265 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-17 15:58:14] 2025-04-17 20:57:49,313 | INFO     | job 6605316793 has state=finished
[2025-04-17 15:58:14] 2025-04-17 20:57:49,314 | INFO     | preparing for final server update for job 6605316793 in state='finished'
[2025-04-17 15:58:14] 2025-04-17 20:57:49,314 | INFO     | this job has now completed (state=finished)
[2025-04-17 15:58:14] 2025-04-17 20:57:49,314 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-17 15:58:14] 2025-04-17 20:57:49,314 | INFO     | log transfer has been attempted: DONE
[2025-04-17 15:58:14] 2025-04-17 20:57:49,314 | INFO     | job 6605316793 has finished - writing final server update
[2025-04-17 15:58:14] 2025-04-17 20:57:49,314 | INFO     | total number of processed events: 400 (read)
[2025-04-17 15:58:14] 2025-04-17 20:57:49,315 | INFO     | executing command: lscpu
[2025-04-17 15:58:14] 2025-04-17 20:57:49,332 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-17 15:58:14] 2025-04-17 20:57:51,518 | INFO     | monitor loop #172: job 0:6605316793 is in state 'finished'
[2025-04-17 15:58:14] 2025-04-17 20:57:51,518 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-17 15:58:14] 2025-04-17 20:57:54,020 | INFO     | monitor loop #173: job 0:6605316793 is in state 'finished'
[2025-04-17 15:58:14] 2025-04-17 20:57:54,020 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-17 15:58:14] 2025-04-17 20:57:54,111 | INFO     | PID=2405 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-04-17 15:58:14] 2025-04-17 20:57:54,111 | INFO     | .. there are 2 such processes running
[2025-04-17 15:58:14] 2025-04-17 20:57:54,863 | INFO     | CPU arch script returned: x86-64-v4
[2025-04-17 15:58:14] 2025-04-17 20:57:54,863 | INFO     | using path: /var/lib/boinc/slots/28/PanDA_Pilot-6605316793/memory_monitor_summary.json (trf name=prmon)
[2025-04-17 15:58:14] 2025-04-17 20:57:54,863 | INFO     | extracted standard info from prmon json
[2025-04-17 15:58:14] 2025-04-17 20:57:54,863 | INFO     | extracted standard memory fields from prmon json
[2025-04-17 15:58:14] 2025-04-17 20:57:54,863 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-17 15:58:14] 2025-04-17 20:57:54,863 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-17 15:58:14] 2025-04-17 20:57:54,864 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-17 15:58:14] 2025-04-17 20:57:54,864 | INFO     | fitting pss+swap vs Time
[2025-04-17 15:58:14] 2025-04-17 20:57:54,864 | INFO     | sum of square deviations: 7553630.0
[2025-04-17 15:58:14] 2025-04-17 20:57:54,864 | INFO     | sum of deviations: 2268563038.0000005
[2025-04-17 15:58:14] 2025-04-17 20:57:54,864 | INFO     | mean x: 1744922460.0
[2025-04-17 15:58:14] 2025-04-17 20:57:54,864 | INFO     | mean y: 2939876.2413793104
[2025-04-17 15:58:14] 2025-04-17 20:57:54,864 | INFO     | -- intersect: -524045312014.8407
[2025-04-17 15:58:14] 2025-04-17 20:57:54,864 | INFO     | intersect: -524045312014.8407
[2025-04-17 15:58:14] 2025-04-17 20:57:54,864 | INFO     | chi2: 0.622008526267651
[2025-04-17 15:58:14] 2025-04-17 20:57:54,864 | INFO     | -- intersect: -524045312014.8407
[2025-04-17 15:58:14] 2025-04-17 20:57:54,865 | INFO     | current memory leak: 300.33 B/s (using 29 data points, chi2=0.62)
[2025-04-17 15:58:14] 2025-04-17 20:57:54,865 | INFO     | ..............................
[2025-04-17 15:58:14] 2025-04-17 20:57:54,865 | INFO     | . Timing measurements:
[2025-04-17 15:58:14] 2025-04-17 20:57:54,865 | INFO     | . get job = 0 s
[2025-04-17 15:58:14] 2025-04-17 20:57:54,865 | INFO     | . initial setup = 3 s
[2025-04-17 15:58:14] 2025-04-17 20:57:54,865 | INFO     | . payload setup = 2 s
[2025-04-17 15:58:14] 2025-04-17 20:57:54,865 | INFO     | . stage-in = 0 s
[2025-04-17 15:58:14] 2025-04-17 20:57:54,865 | INFO     | . payload execution = 2164 s
[2025-04-17 15:58:14] 2025-04-17 20:57:54,865 | INFO     | . stage-out = 0 s
[2025-04-17 15:58:14] 2025-04-17 20:57:54,865 | INFO     | . log creation = 0 s
[2025-04-17 15:58:14] 2025-04-17 20:57:54,865 | INFO     | ..............................
[2025-04-17 15:58:14] 2025-04-17 20:57:55,300 | INFO     | 
[2025-04-17 15:58:14] 2025-04-17 20:57:55,300 | INFO     | job summary report
[2025-04-17 15:58:14] 2025-04-17 20:57:55,300 | INFO     | --------------------------------------------------
[2025-04-17 15:58:14] 2025-04-17 20:57:55,300 | INFO     | PanDA job id: 6605316793
[2025-04-17 15:58:14] 2025-04-17 20:57:55,300 | INFO     | task id: 44075483
[2025-04-17 15:58:14] 2025-04-17 20:57:55,300 | INFO     | errors: (none)
[2025-04-17 15:58:14] 2025-04-17 20:57:55,300 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-17 15:58:14] 2025-04-17 20:57:55,300 | INFO     | pilot state: finished 
[2025-04-17 15:58:14] 2025-04-17 20:57:55,300 | INFO     | transexitcode: 0
[2025-04-17 15:58:14] 2025-04-17 20:57:55,300 | INFO     | exeerrorcode: 0
[2025-04-17 15:58:14] 2025-04-17 20:57:55,301 | INFO     | exeerrordiag: 
[2025-04-17 15:58:14] 2025-04-17 20:57:55,301 | INFO     | exitcode: 0
[2025-04-17 15:58:14] 2025-04-17 20:57:55,301 | INFO     | exitmsg: OK
[2025-04-17 15:58:14] 2025-04-17 20:57:55,301 | INFO     | cpuconsumptiontime: 19202 s
[2025-04-17 15:58:14] 2025-04-17 20:57:55,301 | INFO     | nevents: 400
[2025-04-17 15:58:14] 2025-04-17 20:57:55,301 | INFO     | neventsw: 0
[2025-04-17 15:58:14] 2025-04-17 20:57:55,301 | INFO     | pid: 9293
[2025-04-17 15:58:14] 2025-04-17 20:57:55,301 | INFO     | pgrp: 9293
[2025-04-17 15:58:14] 2025-04-17 20:57:55,301 | INFO     | corecount: 12
[2025-04-17 15:58:14] 2025-04-17 20:57:55,301 | INFO     | event service: False
[2025-04-17 15:58:14] 2025-04-17 20:57:55,301 | INFO     | sizes: {0: 2426824, 2: 2427030, 11: 2427058, 2171: 2461007, 2173: 2461007, 2179: 2461177}
[2025-04-17 15:58:14] 2025-04-17 20:57:55,301 | INFO     | --------------------------------------------------
[2025-04-17 15:58:14] 2025-04-17 20:57:55,301 | INFO     | 
[2025-04-17 15:58:14] 2025-04-17 20:57:55,301 | INFO     | executing command: ls -lF /var/lib/boinc/slots/28
[2025-04-17 15:58:14] 2025-04-17 20:57:55,313 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-17 15:58:14] 2025-04-17 20:57:55,314 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-17 15:58:14] 2025-04-17 20:57:55,314 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-17 15:58:14] 2025-04-17 20:57:55,314 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-17 15:58:14] 2025-04-17 20:57:55,314 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-17 15:58:14] 2025-04-17 20:57:55,314 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-17 15:58:14] 2025-04-17 20:57:55,314 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-17 15:58:14] 2025-04-17 20:57:55,314 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-17 15:58:14] 2025-04-17 20:57:55,314 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-17 15:58:14] 2025-04-17 20:57:55,314 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-17 15:58:14] 2025-04-17 20:57:55,314 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-17 15:58:14] 2025-04-17 20:57:55,314 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-17 15:58:14] 2025-04-17 20:57:55,314 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-17 15:58:14] 2025-04-17 20:57:55,314 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-17 15:58:14] 2025-04-17 20:57:55,314 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-17 15:58:14] 2025-04-17 20:57:55,314 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-17 15:58:14] 2025-04-17 20:57:55,314 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-17 15:58:14] 2025-04-17 20:57:55,314 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-17 15:58:14] 2025-04-17 20:57:55,314 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-17 15:58:14] 2025-04-17 20:57:55,314 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-17 15:58:14] 2025-04-17 20:57:55,314 | INFO     | job 6605316793 has completed (purged errors)
[2025-04-17 15:58:14] 2025-04-17 20:57:55,314 | INFO     | overall cleanup function is called
[2025-04-17 15:58:14] 2025-04-17 20:57:56,322 | INFO     | --- collectZombieJob: --- 10, [9293]
[2025-04-17 15:58:14] 2025-04-17 20:57:56,322 | INFO     | zombie collector waiting for pid 9293
[2025-04-17 15:58:14] 2025-04-17 20:57:56,322 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-17 15:58:14] 2025-04-17 20:57:56,322 | INFO     | collected zombie processes
[2025-04-17 15:58:14] 2025-04-17 20:57:56,322 | INFO     | will attempt to kill all subprocesses of pid=9293
[2025-04-17 15:58:14] 2025-04-17 20:57:56,376 | INFO     | process IDs to be killed: [9293] (in reverse order)
[2025-04-17 15:58:14] 2025-04-17 20:57:56,405 | WARNING  | found no corresponding commands to process id(s)
[2025-04-17 15:58:14] 2025-04-17 20:57:56,405 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-17 15:58:14] 2025-04-17 20:57:56,408 | INFO     | did not find any defunct processes belonging to 9293
[2025-04-17 15:58:14] 2025-04-17 20:57:56,410 | INFO     | did not find any defunct processes belonging to 9293
[2025-04-17 15:58:14] 2025-04-17 20:57:56,410 | INFO     | ready for new job
[2025-04-17 15:58:14] 2025-04-17 20:57:56,410 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-17 15:58:14] 2025-04-17 20:57:56,411 | INFO     | **************************************
[2025-04-17 15:58:14] 2025-04-17 20:57:56,411 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-17 15:58:14] 2025-04-17 20:57:56,411 | INFO     | **************************************
[2025-04-17 15:58:14] 2025-04-17 20:57:56,411 | INFO     | 
[2025-04-17 15:58:14] 2025-04-17 20:57:56,412 | INFO     | architecture information:
[2025-04-17 15:58:14] 2025-04-17 20:57:56,413 | INFO     | executing command: cat /etc/os-release
[2025-04-17 15:58:14] 2025-04-17 20:57:56,421 | INFO     | cat /etc/os-release:
[2025-04-17 15:58:14] NAME="CentOS Linux"
[2025-04-17 15:58:14] VERSION="7 (Core)"
[2025-04-17 15:58:14] ID="centos"
[2025-04-17 15:58:14] ID_LIKE="rhel fedora"
[2025-04-17 15:58:14] VERSION_ID="7"
[2025-04-17 15:58:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-17 15:58:14] ANSI_COLOR="0;31"
[2025-04-17 15:58:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-17 15:58:14] HOME_URL="https://www.centos.org/"
[2025-04-17 15:58:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-17 15:58:14] 
[2025-04-17 15:58:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-17 15:58:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-17 15:58:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-17 15:58:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-17 15:58:14] 
[2025-04-17 15:58:14] 2025-04-17 20:57:56,421 | INFO     | **************************************
[2025-04-17 15:58:14] 2025-04-17 20:57:56,921 | INFO     | executing command: df -mP /var/lib/boinc/slots/28
[2025-04-17 15:58:14] 2025-04-17 20:57:56,932 | INFO     | sufficient remaining disk space (3888700719104 B)
[2025-04-17 15:58:14] 2025-04-17 20:57:56,932 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-17 15:58:14] 2025-04-17 20:57:56,932 | INFO     | current server update state: UPDATING_FINAL
[2025-04-17 15:58:14] 2025-04-17 20:57:56,932 | INFO     | update_server=False
[2025-04-17 15:58:14] 2025-04-17 20:57:56,932 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-17 15:58:14] 2025-04-17 20:57:56,932 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-17 15:58:14] 2025-04-17 20:57:56,933 | INFO     | found 0 job(s) in 20 queues
[2025-04-17 15:58:14] 2025-04-17 20:57:56,933 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-17 15:58:14] 2025-04-17 20:57:56,933 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-17 15:58:14] 2025-04-17 20:57:57,253 | INFO     | all data control threads have been joined
[2025-04-17 15:58:14] 2025-04-17 20:57:57,524 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-17 15:58:14] 2025-04-17 20:57:57,525 | INFO     | aborting loop
[2025-04-17 15:58:14] 2025-04-17 20:57:57,637 | INFO     | all payload control threads have been joined
[2025-04-17 15:58:14] 2025-04-17 20:57:57,685 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-17 15:58:14] 2025-04-17 20:57:57,937 | INFO     | [job] retrieve thread has finished
[2025-04-17 15:58:14] 2025-04-17 20:57:58,042 | INFO     | all job control threads have been joined
[2025-04-17 15:58:14] 2025-04-17 20:57:58,193 | INFO     | [job] validate thread has finished
[2025-04-17 15:58:14] 2025-04-17 20:57:58,201 | INFO     | [payload] execute_payloads thread has finished
[2025-04-17 15:58:14] 2025-04-17 20:57:58,244 | INFO     | [job] create_data_payload thread has finished
[2025-04-17 15:58:14] 2025-04-17 20:57:58,257 | INFO     | [payload] validate_pre thread has finished
[2025-04-17 15:58:14] 2025-04-17 20:57:58,259 | INFO     | [data] control thread has finished
[2025-04-17 15:58:14] 2025-04-17 20:57:58,529 | INFO     | [job] job monitor thread has finished
[2025-04-17 15:58:14] 2025-04-17 20:57:58,641 | INFO     | [payload] control thread has finished
[2025-04-17 15:58:14] 2025-04-17 20:57:58,709 | INFO     | [data] copytool_in thread has finished
[2025-04-17 15:58:14] 2025-04-17 20:57:58,945 | INFO     | [payload] validate_post thread has finished
[2025-04-17 15:58:14] 2025-04-17 20:57:59,045 | INFO     | [job] control thread has finished
[2025-04-17 15:58:14] 2025-04-17 20:57:59,524 | INFO     | [payload] failed_post thread has finished
[2025-04-17 15:58:14] 2025-04-17 20:57:59,689 | INFO     | [data] copytool_out thread has finished
[2025-04-17 15:58:14] 2025-04-17 20:57:59,820 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-17 15:58:14] 2025-04-17 20:57:59,913 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-17 15:58:14] 2025-04-17 20:58:00,917 | INFO     | [job] queue monitor thread has finished
[2025-04-17 15:58:14] 2025-04-17 20:58:03,825 | INFO     | [data] queue_monitor thread has finished
[2025-04-17 15:58:14] 2025-04-17 20:58:07,320 | INFO     | job.realtimelogging is not enabled
[2025-04-17 15:58:14] 2025-04-17 20:58:08,326 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-17 15:58:14] 2025-04-17 20:58:09,429 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140603505420096)>', '<ExcThread(monitor, started 140603153159936)>']
[2025-04-17 15:58:14] 2025-04-17 20:58:09,985 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-17 15:58:14] 2025-04-17 20:58:09,986 | INFO     | [monitor] control thread has ended
[2025-04-17 15:58:14] 2025-04-17 20:58:14,453 | INFO     | all workflow threads have been joined
[2025-04-17 15:58:14] 2025-04-17 20:58:14,453 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-17 15:58:14] 2025-04-17 20:58:14,454 | INFO     | traces error code: 0
[2025-04-17 15:58:14] 2025-04-17 20:58:14,454 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-17 15:58:14] 2025-04-17 20:58:14,517 [wrapper] ==== pilot stdout END ====
[2025-04-17 15:58:14] 2025-04-17 20:58:14,518 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-17 15:58:14] 2025-04-17 20:58:14,520 [wrapper] pilotpid: 2405
[2025-04-17 15:58:14] 2025-04-17 20:58:14,521 [wrapper] Pilot exit status: 0
[2025-04-17 15:58:14] 2025-04-17 20:58:14,526 [wrapper] pandaids: 6605316793
[2025-04-17 15:58:14] 2025-04-17 20:58:14,544 [wrapper] cleanup supervisor_pilot 21877 2406
[2025-04-17 15:58:14] 2025-04-17 20:58:14,545 [wrapper] Test setup, not cleaning
[2025-04-17 15:58:14] 2025-04-17 20:58:14,546 [wrapper] apfmon messages muted
[2025-04-17 15:58:14] 2025-04-17 20:58:14,547 [wrapper] ==== wrapper stdout END ====
[2025-04-17 15:58:14] 2025-04-17 20:58:14,549 [wrapper] ==== wrapper stderr END ====
[2025-04-17 15:58:14]  *** Error codes and diagnostics ***
[2025-04-17 15:58:14]     "exeErrorCode": 0,
[2025-04-17 15:58:14]     "exeErrorDiag": "",
[2025-04-17 15:58:14]     "pilotErrorCode": 0,
[2025-04-17 15:58:14]     "pilotErrorDiag": "",
[2025-04-17 15:58:14]  *** Listing of results directory ***
[2025-04-17 15:58:14] total 419516
[2025-04-17 15:58:14] -rw-r--r-- 1 boinc boinc    495897 Apr 17 07:55 pilot3.tar.gz
[2025-04-17 15:58:14] -rw-r--r-- 1 boinc boinc      5111 Apr 17 07:57 queuedata.json
[2025-04-17 15:58:14] -rwx------ 1 boinc boinc     37140 Apr 17 07:57 runpilot2-wrapper.sh
[2025-04-17 15:58:14] -rw-r--r-- 1 boinc boinc       100 Apr 17 15:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-17 15:58:14] -rwxr-xr-x 1 boinc boinc      7986 Apr 17 15:21 run_atlas
[2025-04-17 15:58:14] -rw-r--r-- 1 boinc boinc       105 Apr 17 15:21 job.xml
[2025-04-17 15:58:14] -rw-r--r-- 2 boinc boinc 223084200 Apr 17 15:21 EVNT.44075481._002180.pool.root.1
[2025-04-17 15:58:14] -rw-r--r-- 2 boinc boinc     17569 Apr 17 15:21 start_atlas.sh
[2025-04-17 15:58:14] drwxrwx--x 1 boinc boinc        76 Apr 17 15:21 shared
[2025-04-17 15:58:14] -rw-r--r-- 2 boinc boinc    508893 Apr 17 15:21 input.tar.gz
[2025-04-17 15:58:14] -rw-r--r-- 1 boinc boinc     10045 Apr 17 15:21 init_data.xml
[2025-04-17 15:58:14] -rw-r--r-- 1 boinc boinc         0 Apr 17 15:21 boinc_lockfile
[2025-04-17 15:58:14] -rw-r--r-- 1 boinc boinc      2578 Apr 17 15:21 pandaJob.out
[2025-04-17 15:58:14] -rw------- 1 boinc boinc       473 Apr 17 15:21 setup.sh.local
[2025-04-17 15:58:14] -rw------- 1 boinc boinc    990274 Apr 17 15:21 agis_schedconf.cvmfs.json
[2025-04-17 15:58:14] -rw------- 1 boinc boinc   1618536 Apr 17 15:21 agis_ddmendpoints.agis.ALL.json
[2025-04-17 15:58:14] drwx------ 1 boinc boinc       368 Apr 17 15:21 pilot3
[2025-04-17 15:58:14] -rw-r--r-- 1 boinc boinc       529 Apr 17 15:57 boinc_task_state.xml
[2025-04-17 15:58:14] -rw------- 1 boinc boinc 201480076 Apr 17 15:57 HITS.44075483._056018.pool.root.1
[2025-04-17 15:58:14] -rw------- 1 boinc boinc        95 Apr 17 15:57 pilot_heartbeat.json
[2025-04-17 15:58:14] -rw------- 1 boinc boinc      1025 Apr 17 15:57 memory_monitor_summary.json
[2025-04-17 15:58:14] -rw------- 1 boinc boinc    338615 Apr 17 15:57 log.44075483._056018.job.log.tgz.1
[2025-04-17 15:58:14] -rw------- 1 boinc boinc      7685 Apr 17 15:57 heartbeat.json
[2025-04-17 15:58:14] -rw-r--r-- 1 boinc boinc      8192 Apr 17 15:58 boinc_mmap_file
[2025-04-17 15:58:14] -rw-r--r-- 1 boinc boinc        27 Apr 17 15:58 wrapper_checkpoint.txt
[2025-04-17 15:58:14] -rw------- 1 boinc boinc      4551 Apr 17 15:58 pilotlog.txt
[2025-04-17 15:58:14] -rw------- 1 boinc boinc    246575 Apr 17 15:58 log.44075483._056018.job.log.1
[2025-04-17 15:58:14] -rw------- 1 boinc boinc       357 Apr 17 15:58 output.list
[2025-04-17 15:58:14] -rw-r--r-- 1 boinc boinc       620 Apr 17 15:58 runtime_log
[2025-04-17 15:58:14] -rw------- 1 boinc boinc    604160 Apr 17 15:58 result.tar.gz
[2025-04-17 15:58:14] -rw-r--r-- 1 boinc boinc     11496 Apr 17 15:58 runtime_log.err
[2025-04-17 15:58:14] -rw------- 1 boinc boinc       652 Apr 17 15:58 MuYKDmjzdP7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmrycLDmRRI41n.diag
[2025-04-17 15:58:14] -rw-r--r-- 1 boinc boinc     21215 Apr 17 15:58 stderr.txt
[2025-04-17 15:58:14] HITS file was successfully produced:
[2025-04-17 15:58:14] -rw------- 1 boinc boinc 201480076 Apr 17 15:57 shared/HITS.pool.root.1
[2025-04-17 15:58:14]  *** Contents of shared directory: ***
[2025-04-17 15:58:14] total 415728
[2025-04-17 15:58:14] -rw-r--r-- 2 boinc boinc 223084200 Apr 17 15:21 ATLAS.root_0
[2025-04-17 15:58:14] -rw-r--r-- 2 boinc boinc     17569 Apr 17 15:21 start_atlas.sh
[2025-04-17 15:58:14] -rw-r--r-- 2 boinc boinc    508893 Apr 17 15:21 input.tar.gz
[2025-04-17 15:58:14] -rw------- 1 boinc boinc 201480076 Apr 17 15:57 HITS.pool.root.1
[2025-04-17 15:58:14] -rw------- 1 boinc boinc    604160 Apr 17 15:58 result.tar.gz
15:58:16 (30922): run_atlas exited; CPU time 19212.424266
15:58:16 (30922): called boinc_finish(0)

</stderr_txt>
]]>

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