Stderr output

<core_client_version>8.2.0</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-17 23:06:31 (19444): Detected: vboxwrapper 26206
2025-04-17 23:06:31 (19444): Detected: BOINC client v8.2.0
2025-04-17 23:06:31 (19444): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-04-17 23:06:31 (19444): Successfully copied 'init_data.xml' to the shared directory.
2025-04-17 23:06:32 (19444): Create VM. (boinc_ce6a1c2ba6cc47f4, slot#9)
2025-04-17 23:06:32 (19444): Setting Memory Size for VM. (4096MB)
2025-04-17 23:06:33 (19444): Setting CPU Count for VM. (1)
2025-04-17 23:06:33 (19444): Setting Chipset Options for VM.
2025-04-17 23:06:33 (19444): Setting Graphics Controller Options for VM.
2025-04-17 23:06:34 (19444): Setting Boot Options for VM.
2025-04-17 23:06:34 (19444): Setting Network Configuration for NAT.
2025-04-17 23:06:34 (19444): Enabling VM Network Access.
2025-04-17 23:06:34 (19444): Disabling USB Support for VM.
2025-04-17 23:06:35 (19444): Disabling COM Port Support for VM.
2025-04-17 23:06:35 (19444): Disabling LPT Port Support for VM.
2025-04-17 23:06:35 (19444): Disabling Audio Support for VM.
2025-04-17 23:06:35 (19444): Disabling Clipboard Support for VM.
2025-04-17 23:06:36 (19444): Disabling Drag and Drop Support for VM.
2025-04-17 23:06:36 (19444): Adding storage controller(s) to VM.
2025-04-17 23:06:36 (19444): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-17 23:06:37 (19444): Adding VirtualBox Guest Additions to VM.
2025-04-17 23:06:37 (19444): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-17 23:06:37 (19444): forwarding host port 51277 to guest port 80
2025-04-17 23:06:37 (19444): Enabling remote desktop for VM.
2025-04-17 23:06:38 (19444): Required extension pack not installed, remote desktop not enabled.
2025-04-17 23:06:38 (19444): Enabling shared directory for VM.
2025-04-17 23:06:38 (19444): Starting VM using VBoxManage interface. (boinc_ce6a1c2ba6cc47f4, slot#9)
2025-04-17 23:06:44 (19444): Successfully started VM. (PID = '18244')
2025-04-17 23:06:44 (19444): Reporting VM Process ID to BOINC.
2025-04-17 23:06:44 (19444): Guest Log: BIOS: VirtualBox 7.1.4
2025-04-17 23:06:44 (19444): Guest Log: CPUID EDX: 0x178bfbff
2025-04-17 23:06:44 (19444): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-17 23:06:44 (19444): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-17 23:06:44 (19444): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-17 23:06:44 (19444): Detected: Web Application Enabled (http://localhost:51277)
2025-04-17 23:06:44 (19444): Preference change detected
2025-04-17 23:06:44 (19444): Setting CPU throttle for VM. (100%)
2025-04-17 23:06:45 (19444): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-17 23:06:46 (19444): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-17 23:06:46 (19444): Guest Log: BIOS: Booting from Hard Disk...
2025-04-17 23:06:50 (19444): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-17 23:06:50 (19444): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-17 23:06:50 (19444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-17 23:06:50 (19444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-17 23:06:50 (19444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-17 23:06:50 (19444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-17 23:06:50 (19444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-17 23:06:50 (19444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-17 23:06:50 (19444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-17 23:06:50 (19444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-17 23:06:50 (19444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-17 23:06:50 (19444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-17 23:06:50 (19444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-17 23:06:50 (19444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-17 23:06:50 (19444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-17 23:06:50 (19444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-17 23:06:50 (19444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-17 23:06:50 (19444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-17 23:06:50 (19444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-17 23:06:50 (19444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-17 23:06:50 (19444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-17 23:06:50 (19444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-17 23:06:50 (19444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-17 23:06:50 (19444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-17 23:06:50 (19444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-17 23:06:50 (19444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-17 23:06:50 (19444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-17 23:06:50 (19444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-17 23:06:50 (19444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-17 23:06:50 (19444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-17 23:06:50 (19444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-17 23:06:50 (19444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-17 23:06:56 (19444): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-17 23:06:56 (19444): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-17 23:07:14 (19444): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-17 23:07:14 (19444): Guest Log: 00:00:00.000748 main     Log opened 2025-04-17T23:07:12.501842000Z
2025-04-17 23:07:14 (19444): Guest Log: 00:00:00.001075 main     OS Product: Linux
2025-04-17 23:07:14 (19444): Guest Log: 00:00:00.001207 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-17 23:07:14 (19444): Guest Log: 00:00:00.001378 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-17 23:07:14 (19444): Guest Log: 00:00:00.001551 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-17 23:07:14 (19444): Guest Log: 00:00:00.001554 main     Process ID: 1256
2025-04-17 23:07:14 (19444): Guest Log: 00:00:00.001556 main     Package type: LINUX_64BITS_GENERIC
2025-04-17 23:07:14 (19444): Guest Log: 00:00:00.008740 main     5.2.32 r132073 started. Verbose level = 0
2025-04-17 23:07:15 (19444): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-17 23:07:15 (19444): Guest Log: [INFO] Mounting shared directory
2025-04-17 23:07:15 (19444): Guest Log: [INFO] Checking for init_data.xml
2025-04-17 23:07:19 (19444): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-17 23:07:19 (19444): Guest Log: [INFO] Detected branch: prod
2025-04-17 23:07:19 (19444): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-17 23:07:19 (19444): Guest Log: Copying input files
2025-04-17 23:07:21 (19444): Guest Log: Copied input files into RunAtlas.
2025-04-17 23:07:21 (19444): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2025-04-17 23:07:24 (19444): Guest Log: 00:00:10.043368 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 187 857 606 000ns (GuestNow=1 744 924 044 685 413 000 ns GuestLast=1 744 931 232 543 019 000 ns fSetTimeLastLoop=true )
2025-04-17 23:07:30 (19444): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-17 23:07:30 (19444): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-17 23:07:30 (19444): Guest Log: 2.6.3.0 1525 0 31524 144977 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2025-04-17 23:07:31 (19444): Guest Log: copied the webapp to /var/www
2025-04-17 23:07:31 (19444): Guest Log: core_number=1
2025-04-17 23:07:31 (19444): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-17 23:07:31 (19444): Guest Log:  *** Starting ATLAS job. (PandaID=6603825150 taskID=44075483) ***
2025-04-18 00:46:50 (19444): Status Report: Elapsed Time: '6000.000000'
2025-04-18 00:46:50 (19444): Status Report: CPU Time: '4820.718750'
2025-04-18 02:26:55 (19444): Status Report: Elapsed Time: '12000.000000'
2025-04-18 02:26:55 (19444): Status Report: CPU Time: '10794.390625'
2025-04-18 04:07:00 (19444): Status Report: Elapsed Time: '18000.000000'
2025-04-18 04:07:00 (19444): Status Report: CPU Time: '16770.953125'
2025-04-18 05:47:06 (19444): Status Report: Elapsed Time: '24000.000000'
2025-04-18 05:47:06 (19444): Status Report: CPU Time: '22749.890625'
2025-04-18 07:27:11 (19444): Status Report: Elapsed Time: '30000.000000'
2025-04-18 07:27:11 (19444): Status Report: CPU Time: '28731.046875'
2025-04-18 09:07:16 (19444): Status Report: Elapsed Time: '36000.000000'
2025-04-18 09:07:16 (19444): Status Report: CPU Time: '34710.375000'
2025-04-18 10:47:22 (19444): Status Report: Elapsed Time: '42000.000000'
2025-04-18 10:47:22 (19444): Status Report: CPU Time: '40691.343750'
2025-04-18 12:27:27 (19444): Status Report: Elapsed Time: '48000.000000'
2025-04-18 12:27:27 (19444): Status Report: CPU Time: '46674.000000'
2025-04-18 13:56:03 (19444): Guest Log:  *** Job finished ***
2025-04-18 13:56:03 (19444): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-18 13:56:03 (19444): Guest Log: 2025-04-18 11:55:52,775 | INFO     | [data] copytool_out thread has finished
2025-04-18 13:56:03 (19444): Guest Log: 2025-04-18 11:55:52,811 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-04-18 13:56:03 (19444): Guest Log: 2025-04-18 11:55:56,817 | INFO     | [data] queue_monitor thread has finished
2025-04-18 13:56:03 (19444): Guest Log: 2025-04-18 11:55:57,453 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140150225729344)>', '<ExcThread(monitor, started 140149774067456)>']
2025-04-18 13:56:03 (19444): Guest Log: 2025-04-18 11:55:58,280 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-18 13:56:03 (19444): Guest Log: 2025-04-18 11:55:58,280 | INFO     | [monitor] control thread has ended
2025-04-18 13:56:03 (19444): Guest Log: 2025-04-18 11:56:02,456 | INFO     | all workflow threads have been joined
2025-04-18 13:56:03 (19444): Guest Log: 2025-04-18 11:56:02,456 | INFO     | end of generic workflow (traces error code: 0)
2025-04-18 13:56:03 (19444): Guest Log: 2025-04-18 11:56:02,456 | INFO     | traces error code: 0
2025-04-18 13:56:03 (19444): Guest Log: 2025-04-18 11:56:02,456 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-18 13:56:03 (19444): Guest Log: 2025-04-18 11:56:02,619 [wrapper] ==== pilot stdout END ====
2025-04-18 13:56:03 (19444): Guest Log: 2025-04-18 11:56:02,625 [wrapper] ==== wrapper stdout RESUME ====
2025-04-18 13:56:03 (19444): Guest Log: 2025-04-18 11:56:02,631 [wrapper] pilotpid: 5780
2025-04-18 13:56:03 (19444): Guest Log: 2025-04-18 11:56:02,636 [wrapper] Pilot exit status: 0
2025-04-18 13:56:03 (19444): Guest Log: 2025-04-18 11:56:02,663 [wrapper] pandaids: 6603825150
2025-04-18 13:56:03 (19444): Guest Log: 2025-04-18 11:56:02,703 [wrapper] cleanup supervisor_pilot 10897 5781
2025-04-18 13:56:03 (19444): Guest Log: 2025-04-18 11:56:02,709 [wrapper] Test setup, not cleaning
2025-04-18 13:56:03 (19444): Guest Log: 2025-04-18 11:56:02,715 [wrapper] apfmon messages muted
2025-04-18 13:56:03 (19444): Guest Log: 2025-04-18 11:56:02,720 [wrapper] ==== wrapper stdout END ====
2025-04-18 13:56:03 (19444): Guest Log: 2025-04-18 11:56:02,724 [wrapper] ==== wrapper stderr END ====
2025-04-18 13:56:03 (19444): Guest Log:  *** Error codes and diagnostics ***
2025-04-18 13:56:03 (19444): Guest Log:     "exeErrorCode": 0,
2025-04-18 13:56:03 (19444): Guest Log:     "exeErrorDiag": "",
2025-04-18 13:56:03 (19444): Guest Log:     "pilotErrorCode": 0,
2025-04-18 13:56:03 (19444): Guest Log:     "pilotErrorDiag": "",
2025-04-18 13:56:03 (19444): Guest Log:  *** Listing of results directory ***
2025-04-18 13:56:03 (19444): Guest Log: total 210696
2025-04-18 13:56:03 (19444): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 16 08:53 pilot3.tar.gz
2025-04-18 13:56:03 (19444): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 16 08:54 runpilot2-wrapper.sh
2025-04-18 13:56:03 (19444): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 16 08:54 queuedata.json
2025-04-18 13:56:03 (19444): Guest Log: -rwxr-xr-x. 1 atlas atlas      9395 Apr 17 21:07 init_data.xml
2025-04-18 13:56:03 (19444): Guest Log: -rwxr-xr-x. 1 atlas atlas    508890 Apr 17 21:07 input.tar.gz
2025-04-18 13:56:03 (19444): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 17 21:07 start_atlas.sh
2025-04-18 13:56:03 (19444): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 17 21:07 EVNT.44075481._001506.pool.root.1 -> /data/./ATLAS.root_0
2025-04-18 13:56:03 (19444): Guest Log: -rw-r--r--. 1 atlas atlas      2579 Apr 17 21:07 pandaJob.out
2025-04-18 13:56:03 (19444): Guest Log: -rw-------. 1 atlas atlas       460 Apr 17 21:07 setup.sh.local
2025-04-18 13:56:03 (19444): Guest Log: -rw-------. 1 atlas atlas    990274 Apr 17 21:07 agis_schedconf.cvmfs.json
2025-04-18 13:56:03 (19444): Guest Log: drwx------. 4 atlas atlas      4096 Apr 17 21:07 pilot3
2025-04-18 13:56:03 (19444): Guest Log: -rw-------. 1 atlas atlas 201347456 Apr 18 11:54 HITS.44075483._038375.pool.root.1
2025-04-18 13:56:03 (19444): Guest Log: -rw-------. 1 atlas atlas        95 Apr 18 11:55 pilot_heartbeat.json
2025-04-18 13:56:03 (19444): Guest Log: -rw-------. 1 atlas atlas      1022 Apr 18 11:55 memory_monitor_summary.json
2025-04-18 13:56:03 (19444): Guest Log: -rw-------. 1 atlas atlas   1618536 Apr 18 11:55 agis_ddmendpoints.agis.ALL.json
2025-04-18 13:56:03 (19444): Guest Log: -rw-------. 1 atlas atlas    645662 Apr 18 11:55 log.44075483._038375.job.log.tgz.1
2025-04-18 13:56:03 (19444): Guest Log: -rw-------. 1 atlas atlas      7690 Apr 18 11:55 heartbeat.json
2025-04-18 13:56:03 (19444): Guest Log: -rw-------. 1 atlas atlas      4599 Apr 18 11:56 pilotlog.txt
2025-04-18 13:56:03 (19444): Guest Log: -rw-------. 1 atlas atlas   4655512 Apr 18 11:56 log.44075483._038375.job.log.1
2025-04-18 13:56:03 (19444): Guest Log: -rw-------. 1 atlas atlas       357 Apr 18 11:56 output.list
2025-04-18 13:56:03 (19444): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 18 11:56 runtime_log
2025-04-18 13:56:03 (19444): Guest Log: -rw-------. 1 atlas atlas   5324800 Apr 18 11:56 result.tar.gz
2025-04-18 13:56:03 (19444): Guest Log: -rw-r--r--. 1 atlas atlas     11168 Apr 18 11:56 runtime_log.err
2025-04-18 13:56:03 (19444): Guest Log: -rw-------. 1 atlas atlas       656 Apr 18 11:56 BJoMDmjiDP7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmyL2KDmezoPpn.diag
2025-04-18 13:56:03 (19444): Guest Log: Looking for outputfile HITS.44075483._038375.pool.root.1
2025-04-18 13:56:03 (19444): Guest Log: HITS file was successfully produced
2025-04-18 13:56:03 (19444): Guest Log: -rw-------. 1 atlas atlas 201347456 Apr 18 11:54 /home/atlas/RunAtlas/HITS.44075483._038375.pool.root.1
2025-04-18 13:56:05 (19444): Guest Log: Successfully finished the ATLAS job!
2025-04-18 13:56:05 (19444): Guest Log: Copying the results back to the shared directory!
2025-04-18 13:56:05 (19444): Guest Log:  *** Contents of shared directory: ***
2025-04-18 13:56:05 (19444): Guest Log: total 420888
2025-04-18 13:56:05 (19444): Guest Log: -rwxrwxrwx. 1 root root 223765730 Apr 17 21:06 ATLAS.root_0
2025-04-18 13:56:05 (19444): Guest Log: -rwxrwxrwx. 1 root root 201347456 Apr 18 11:56 HITS.pool.root.1
2025-04-18 13:56:05 (19444): Guest Log: -rwxrwxrwx. 1 root root      9395 Apr 17 21:06 init_data.xml
2025-04-18 13:56:05 (19444): Guest Log: -rwxrwxrwx. 1 root root    508890 Apr 17 12:31 input.tar.gz
2025-04-18 13:56:05 (19444): Guest Log: -rwxrwxrwx. 1 root root   5324800 Apr 18 11:56 result.tar.gz
2025-04-18 13:56:05 (19444): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 17 12:31 start_atlas.sh
2025-04-18 13:56:05 (19444): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-18 13:56:05 (19444): VM Completion File Detected.
2025-04-18 13:56:05 (19444): Powering off VM.
2025-04-18 13:56:06 (19444): Successfully stopped VM.
2025-04-18 13:56:06 (19444): Deregistering VM. (boinc_ce6a1c2ba6cc47f4, slot#9)
2025-04-18 13:56:06 (19444): Removing network bandwidth throttle group from VM.
2025-04-18 13:56:06 (19444): Removing VM from VirtualBox.
13:56:12 (19444): called boinc_finish(0)

</stderr_txt>
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