Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-17 20:18:20 (4312): Detected: vboxwrapper 26206
2025-04-17 20:18:20 (4312): Detected: BOINC client v8.0.2
2025-04-17 20:18:21 (4312): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-04-17 20:18:21 (4312): Successfully copied 'init_data.xml' to the shared directory.
2025-04-17 20:18:21 (4312): Create VM. (boinc_fb05e5096f0cd3f9, slot#0)
2025-04-17 20:18:22 (4312): Setting Memory Size for VM. (4800MB)
2025-04-17 20:18:22 (4312): Setting CPU Count for VM. (8)
2025-04-17 20:18:23 (4312): Setting Chipset Options for VM.
2025-04-17 20:18:23 (4312): Setting Graphics Controller Options for VM.
2025-04-17 20:18:23 (4312): Setting Boot Options for VM.
2025-04-17 20:18:23 (4312): Setting Network Configuration for NAT.
2025-04-17 20:18:24 (4312): Enabling VM Network Access.
2025-04-17 20:18:24 (4312): Disabling USB Support for VM.
2025-04-17 20:18:24 (4312): Disabling COM Port Support for VM.
2025-04-17 20:18:24 (4312): Disabling LPT Port Support for VM.
2025-04-17 20:18:25 (4312): Disabling Audio Support for VM.
2025-04-17 20:18:25 (4312): Disabling Clipboard Support for VM.
2025-04-17 20:18:25 (4312): Disabling Drag and Drop Support for VM.
2025-04-17 20:18:25 (4312): Adding storage controller(s) to VM.
2025-04-17 20:18:26 (4312): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-17 20:18:29 (4312): Adding VirtualBox Guest Additions to VM.
2025-04-17 20:18:29 (4312): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-17 20:18:29 (4312): forwarding host port 52999 to guest port 80
2025-04-17 20:18:29 (4312): Enabling remote desktop for VM.
2025-04-17 20:18:30 (4312): Required extension pack not installed, remote desktop not enabled.
2025-04-17 20:18:30 (4312): Enabling shared directory for VM.
2025-04-17 20:18:30 (4312): Starting VM using VBoxManage interface. (boinc_fb05e5096f0cd3f9, slot#0)
2025-04-17 20:18:36 (4312): Successfully started VM. (PID = '13688')
2025-04-17 20:18:36 (4312): Reporting VM Process ID to BOINC.
2025-04-17 20:18:36 (4312): Guest Log: BIOS: VirtualBox 7.1.4
2025-04-17 20:18:36 (4312): Guest Log: CPUID EDX: 0x178bfbff
2025-04-17 20:18:36 (4312): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-17 20:18:36 (4312): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-17 20:18:36 (4312): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-17 20:18:36 (4312): Detected: Web Application Enabled (http://localhost:52999)
2025-04-17 20:18:36 (4312): Preference change detected
2025-04-17 20:18:36 (4312): Setting CPU throttle for VM. (100%)
2025-04-17 20:18:37 (4312): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-17 20:18:38 (4312): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-17 20:18:38 (4312): Guest Log: BIOS: Booting from Hard Disk...
2025-04-17 20:18:41 (4312): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-17 20:18:41 (4312): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-17 20:18:41 (4312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-17 20:18:41 (4312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-17 20:18:41 (4312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-17 20:18:41 (4312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-17 20:18:41 (4312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-17 20:18:41 (4312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-17 20:18:41 (4312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-17 20:18:41 (4312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-17 20:18:41 (4312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-17 20:18:41 (4312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-17 20:18:41 (4312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-17 20:18:41 (4312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-17 20:18:41 (4312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-17 20:18:41 (4312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-17 20:18:41 (4312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-17 20:18:41 (4312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-17 20:18:41 (4312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-17 20:18:41 (4312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-17 20:18:41 (4312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-17 20:18:41 (4312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-17 20:18:41 (4312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-17 20:18:41 (4312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-17 20:18:41 (4312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-17 20:18:41 (4312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-17 20:18:41 (4312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-17 20:18:41 (4312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-17 20:18:41 (4312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-17 20:18:41 (4312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-17 20:18:41 (4312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-17 20:18:41 (4312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-17 20:18:56 (4312): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-17 20:18:56 (4312): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-17 20:19:14 (4312): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-17 20:19:14 (4312): Guest Log: 00:00:00.000182 main     Log opened 2025-04-17T20:19:12.846603000Z
2025-04-17 20:19:14 (4312): Guest Log: 00:00:00.000289 main     OS Product: Linux
2025-04-17 20:19:14 (4312): Guest Log: 00:00:00.000309 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-17 20:19:14 (4312): Guest Log: 00:00:00.000341 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-17 20:19:14 (4312): Guest Log: 00:00:00.000358 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-17 20:19:14 (4312): Guest Log: 00:00:00.000359 main     Process ID: 1396
2025-04-17 20:19:14 (4312): Guest Log: 00:00:00.000359 main     Package type: LINUX_64BITS_GENERIC
2025-04-17 20:19:14 (4312): Guest Log: 00:00:00.001160 main     5.2.32 r132073 started. Verbose level = 0
2025-04-17 20:19:15 (4312): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-17 20:19:15 (4312): Guest Log: [INFO] Mounting shared directory
2025-04-17 20:19:15 (4312): Guest Log: [INFO] Checking for init_data.xml
2025-04-17 20:19:23 (4312): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-17 20:19:23 (4312): Guest Log: [INFO] Detected branch: prod
2025-04-17 20:19:24 (4312): Guest Log: 00:00:10.004348 timesync vgsvcTimeSyncWorker: Radical guest time change: -28 788 234 435 000ns (GuestNow=1 744 892 364 614 146 000 ns GuestLast=1 744 921 152 848 581 000 ns fSetTimeLastLoop=true )
2025-04-17 20:19:25 (4312): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-17 20:19:25 (4312): Guest Log: Copying input files
2025-04-17 20:19:26 (4312): Guest Log: Copied input files into RunAtlas.
2025-04-17 20:19:26 (4312): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-17 20:19:26 (4312): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-17 20:19:26 (4312): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-17 20:19:26 (4312): Guest Log: Further information can be found at the LHC@home message board.
2025-04-17 20:19:38 (4312): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-17 20:19:38 (4312): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-17 20:19:38 (4312): Guest Log: 2.6.3.0 1675 0 29992 144965 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-04-17 20:19:41 (4312): Guest Log: copied the webapp to /var/www
2025-04-17 20:19:41 (4312): Guest Log: ATHENA_PROC_NUMBER=8
2025-04-17 20:19:41 (4312): Guest Log: ATHENA_CORE_NUMBER=8
2025-04-17 20:19:42 (4312): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-17 20:19:42 (4312): Guest Log:  *** Starting ATLAS job. (PandaID=6605109291 taskID=44075483) ***
2025-04-17 21:57:18 (4312): VM state change detected. (old = 'running', new = 'paused')
2025-04-17 22:57:23 (4312): VM state change detected. (old = 'paused', new = 'running')
2025-04-17 22:57:25 (4312): Guest Log: 01:38:05.220414 timesync vgsvcTimeSyncWorker: Radical host time change: 3 615 100 000 000ns (HostNow=1 744 901 844 921 000 000 ns HostLast=1 744 898 229 821 000 000 ns)
2025-04-17 22:57:35 (4312): Guest Log: 01:38:15.220818 timesync vgsvcTimeSyncWorker: Radical guest time change: 3 615 093 012 000ns (GuestNow=1 744 901 854 921 497 000 ns GuestLast=1 744 898 239 828 485 000 ns fSetTimeLastLoop=true )
2025-04-17 22:58:49 (4312): Status Report: Elapsed Time: '6000.000000'
2025-04-17 22:58:49 (4312): Status Report: CPU Time: '2164.453125'
2025-04-18 00:16:43 (4312): Guest Log:  *** Job finished ***
2025-04-18 00:16:43 (4312): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-18 00:16:43 (4312): Guest Log: 2025-04-17 16:16:30,575 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-04-18 00:16:43 (4312): Guest Log: 2025-04-17 16:16:31,576 | INFO     | [job] queue monitor thread has finished
2025-04-18 00:16:43 (4312): Guest Log: 2025-04-17 16:16:31,980 | INFO     | [data] queue_monitor thread has finished
2025-04-18 00:16:43 (4312): Guest Log: 2025-04-17 16:16:33,714 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139906125993792)>', '<ExcThread(monitor, started 139905824954112)>']
2025-04-18 00:16:43 (4312): Guest Log: 2025-04-17 16:16:34,699 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-18 00:16:43 (4312): Guest Log: 2025-04-17 16:16:34,700 | INFO     | [monitor] control thread has ended
2025-04-18 00:16:43 (4312): Guest Log: 2025-04-17 16:16:38,720 | INFO     | all workflow threads have been joined
2025-04-18 00:16:43 (4312): Guest Log: 2025-04-17 16:16:38,720 | INFO     | end of generic workflow (traces error code: 0)
2025-04-18 00:16:43 (4312): Guest Log: 2025-04-17 16:16:38,720 | INFO     | traces error code: 0
2025-04-18 00:16:43 (4312): Guest Log: 2025-04-17 16:16:38,720 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-18 00:16:43 (4312): Guest Log: 2025-04-17 16:16:38,924 [wrapper] ==== pilot stdout END ====
2025-04-18 00:16:43 (4312): Guest Log: 2025-04-17 16:16:38,930 [wrapper] ==== wrapper stdout RESUME ====
2025-04-18 00:16:43 (4312): Guest Log: 2025-04-17 16:16:38,933 [wrapper] pilotpid: 6033
2025-04-18 00:16:43 (4312): Guest Log: 2025-04-17 16:16:38,937 [wrapper] Pilot exit status: 0
2025-04-18 00:16:43 (4312): Guest Log: 2025-04-17 16:16:39,295 [wrapper] pandaids: 6605109291
2025-04-18 00:16:43 (4312): Guest Log: 2025-04-17 16:16:39,321 [wrapper] cleanup supervisor_pilot 10715 6034
2025-04-18 00:16:43 (4312): Guest Log: 2025-04-17 16:16:39,324 [wrapper] Test setup, not cleaning
2025-04-18 00:16:43 (4312): Guest Log: 2025-04-17 16:16:39,330 [wrapper] apfmon messages muted
2025-04-18 00:16:43 (4312): Guest Log: 2025-04-17 16:16:39,335 [wrapper] ==== wrapper stdout END ====
2025-04-18 00:16:43 (4312): Guest Log: 2025-04-17 16:16:39,338 [wrapper] ==== wrapper stderr END ====
2025-04-18 00:16:43 (4312): Guest Log:  *** Error codes and diagnostics ***
2025-04-18 00:16:43 (4312): Guest Log:     "exeErrorCode": 68,
2025-04-18 00:16:43 (4312): Guest Log:     "exeErrorDiag": "Fatal error in athena logfile: \"Logfile error in log.EVNTtoHITS: \"ToolSvc.G4AtlasDetectorConstructionTool                      0   FATAL Failed to initialize SDs for worker thread\"\"",
2025-04-18 00:16:43 (4312): Guest Log:     "pilotErrorCode": 1305,
2025-04-18 00:16:43 (4312): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformLogfileErrorException: Fatal error in athena logfile: \"Logfile error in log.EVNTtoHITS: \"ToolSvc.G4AtlasDetectorConstructionTool                      0   FATAL Failed to initialize",
2025-04-18 00:16:43 (4312): Guest Log:  *** Listing of results directory ***
2025-04-18 00:16:43 (4312): Guest Log: total 5992
2025-04-18 00:16:43 (4312): Guest Log: -rwx------. 1 atlas atlas   37140 Apr 17 08:07 runpilot2-wrapper.sh
2025-04-18 00:16:43 (4312): Guest Log: -rw-r--r--. 1 atlas atlas    5111 Apr 17 08:07 queuedata.json
2025-04-18 00:16:43 (4312): Guest Log: -rw-r--r--. 1 atlas atlas  495897 Apr 17 08:07 pilot3.tar.gz
2025-04-18 00:16:43 (4312): Guest Log: -rwxr-xr-x. 1 atlas atlas   12292 Apr 17 12:19 init_data.xml
2025-04-18 00:16:43 (4312): Guest Log: -rwxr-xr-x. 1 atlas atlas  508879 Apr 17 12:19 input.tar.gz
2025-04-18 00:16:43 (4312): Guest Log: -rwxr-xr-x. 1 atlas atlas   17569 Apr 17 12:19 start_atlas.sh
2025-04-18 00:16:43 (4312): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Apr 17 12:19 EVNT.44075481._002057.pool.root.1 -> /data/./ATLAS.root_0
2025-04-18 00:16:43 (4312): Guest Log: -rw-r--r--. 1 atlas atlas    2578 Apr 17 12:19 pandaJob.out
2025-04-18 00:16:43 (4312): Guest Log: -rw-------. 1 atlas atlas     424 Apr 17 12:19 setup.sh.local
2025-04-18 00:16:43 (4312): Guest Log: -rw-------. 1 atlas atlas  990266 Apr 17 12:21 agis_schedconf.cvmfs.json
2025-04-18 00:16:43 (4312): Guest Log: drwx------. 4 atlas atlas    4096 Apr 17 12:22 pilot3
2025-04-18 00:16:43 (4312): Guest Log: -rw-------. 1 atlas atlas    1039 Apr 17 16:14 memory_monitor_summary.json
2025-04-18 00:16:43 (4312): Guest Log: -rw-------. 1 atlas atlas  324434 Apr 17 16:14 log.44075483._052731.job.log.tgz.1
2025-04-18 00:16:43 (4312): Guest Log: -rw-------. 1 atlas atlas 1618536 Apr 17 16:14 agis_ddmendpoints.agis.ALL.json
2025-04-18 00:16:43 (4312): Guest Log: -rw-------. 1 atlas atlas      97 Apr 17 16:16 pilot_heartbeat.json
2025-04-18 00:16:43 (4312): Guest Log: -rw-------. 1 atlas atlas   14329 Apr 17 16:16 heartbeat.json
2025-04-18 00:16:43 (4312): Guest Log: -rw-------. 1 atlas atlas    4722 Apr 17 16:16 pilotlog.txt
2025-04-18 00:16:43 (4312): Guest Log: -rw-------. 1 atlas atlas  836680 Apr 17 16:16 log.44075483._052731.job.log.1
2025-04-18 00:16:43 (4312): Guest Log: -rw-------. 1 atlas atlas     188 Apr 17 16:16 output.list
2025-04-18 00:16:43 (4312): Guest Log: -rw-r--r--. 1 atlas atlas     620 Apr 17 16:16 runtime_log
2025-04-18 00:16:43 (4312): Guest Log: -rw-------. 1 atlas atlas 1187840 Apr 17 16:16 result.tar.gz
2025-04-18 00:16:43 (4312): Guest Log: -rw-r--r--. 1 atlas atlas   10786 Apr 17 16:16 runtime_log.err
2025-04-18 00:16:43 (4312): Guest Log: -rw-------. 1 atlas atlas     659 Apr 17 16:16 opAMDm1SZP7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmSj3KDm5HNUcn.diag
2025-04-18 00:16:43 (4312): Guest Log: Looking for outputfile HITS.44075483._052731.pool.root.1
2025-04-18 00:16:43 (4312): Guest Log: No HITS file was produced
2025-04-18 00:16:43 (4312): Guest Log: Successfully finished the ATLAS job!
2025-04-18 00:16:43 (4312): Guest Log: Copying the results back to the shared directory!
2025-04-18 00:16:43 (4312): Guest Log:  *** Contents of shared directory: ***
2025-04-18 00:16:43 (4312): Guest Log: total 218856
2025-04-18 00:16:43 (4312): Guest Log: -rwxrwxrwx. 1 root root 222368871 Apr 17 12:18 ATLAS.root_0
2025-04-18 00:16:43 (4312): Guest Log: -rwxrwxrwx. 1 root root     12292 Apr 17 12:18 init_data.xml
2025-04-18 00:16:43 (4312): Guest Log: -rwxrwxrwx. 1 root root    508879 Apr 17 11:02 input.tar.gz
2025-04-18 00:16:43 (4312): Guest Log: -rwxrwxrwx. 1 root root   1187840 Apr 17 16:16 result.tar.gz
2025-04-18 00:16:43 (4312): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 17 11:02 start_atlas.sh
2025-04-18 00:16:43 (4312): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-18 00:16:43 (4312): VM Completion File Detected.
2025-04-18 00:16:43 (4312): Powering off VM.
2025-04-18 00:16:44 (4312): Successfully stopped VM.
2025-04-18 00:16:44 (4312): Deregistering VM. (boinc_fb05e5096f0cd3f9, slot#0)
2025-04-18 00:16:44 (4312): Removing network bandwidth throttle group from VM.
2025-04-18 00:16:44 (4312): Removing VM from VirtualBox.
00:16:49 (4312): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN