Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:15:12 (24806): wrapper (7.7.26015): starting
05:15:12 (24806): wrapper: running run_atlas (--nthreads 10)
[2025-04-17 05:15:12] Arguments: --nthreads 10
[2025-04-17 05:15:12] Threads: 10
[2025-04-17 05:15:12] Checking for CVMFS
[2025-04-17 05:15:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-17 05:15:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-17 05:15:13] Running cvmfs_config stat atlas.cern.ch
[2025-04-17 05:15:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-17 05:15:14] 2.11.2.0 38287 33307 112896 144955 1 59 11005288 18432000 9085 130560 0 65918788 98.377 233039614 39322 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-17 05:15:14] CVMFS is ok
[2025-04-17 05:15:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-17 05:15:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-17 05:15:14] Further information can be found at the LHC@home message board.
[2025-04-17 05:15:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-17 05:15:14] Checking for apptainer binary...
[2025-04-17 05:15:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-17 05:15:14] Running /usr/bin/apptainer --version
[2025-04-17 05:15:14] apptainer version 1.3.2-1.el7
[2025-04-17 05:15:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-17 05:15:31] c-210-10.aglt2.org
[2025-04-17 05:15:31] apptainer works
[2025-04-17 05:15:31] Set ATHENA_PROC_NUMBER=10
[2025-04-17 05:15:31] Set ATHENA_CORE_NUMBER=10
[2025-04-17 05:15:31] Starting ATLAS job with PandaID=6605003902
[2025-04-17 05:15:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-17 17:00:55]  *** The last 200 lines of the pilot log: ***
[2025-04-17 17:00:55] 2025-04-17 21:00:38,944 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-17 17:00:55] 2025-04-17 21:00:39,043 | INFO     | fitting pss+swap vs Time
[2025-04-17 17:00:55] 2025-04-17 21:00:39,047 | INFO     | sum of square deviations: 100983084664.97533
[2025-04-17 17:00:55] 2025-04-17 21:00:39,060 | INFO     | sufficient remaining disk space (57106497536 B)
[2025-04-17 17:00:55] 2025-04-17 21:00:39,062 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-04-17 17:00:55] 2025-04-17 21:00:39,070 | INFO     | sum of deviations: 980946266526.6835
[2025-04-17 17:00:55] 2025-04-17 21:00:39,070 | INFO     | mean x: 1744902624.7776163
[2025-04-17 17:00:55] 2025-04-17 21:00:39,071 | INFO     | mean y: 2489357.1613372094
[2025-04-17 17:00:55] 2025-04-17 21:00:39,071 | INFO     | -- intersect: -16947435681.342451
[2025-04-17 17:00:55] 2025-04-17 21:00:39,071 | INFO     | intersect: -16947435681.342451
[2025-04-17 17:00:55] 2025-04-17 21:00:39,073 | INFO     | chi2: 11.141049513720901
[2025-04-17 17:00:55] 2025-04-17 21:00:39,075 | INFO     | sum of square deviations: 98797674561.75368
[2025-04-17 17:00:55] 2025-04-17 21:00:39,081 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6605003902: 4463178 B (within 2537553920 B limit)
[2025-04-17 17:00:55] 2025-04-17 21:00:39,084 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6605003902/HITS.44075483._051563.pool.root.1 does not exist (skip from workdir size calculation)
[2025-04-17 17:00:55] 2025-04-17 21:00:39,084 | INFO     | total size of present files: 0 B (workdir size: 4463178 B)
[2025-04-17 17:00:55] 2025-04-17 21:00:39,084 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6605003902/HITS.44075483._051563.pool.root.1 since it does not exist
[2025-04-17 17:00:55] 2025-04-17 21:00:39,120 | INFO     | sum of deviations: 1067575435357.8118
[2025-04-17 17:00:55] 2025-04-17 21:00:39,122 | INFO     | mean x: 1744902472.2869692
[2025-04-17 17:00:55] 2025-04-17 21:00:39,123 | INFO     | mean y: 2495372.551976574
[2025-04-17 17:00:55] 2025-04-17 21:00:39,123 | INFO     | -- intersect: -18852351411.76507
[2025-04-17 17:00:55] 2025-04-17 21:00:39,124 | INFO     | intersect: -18852351411.76507
[2025-04-17 17:00:55] 2025-04-17 21:00:39,127 | INFO     | chi2: 9.583680629352518
[2025-04-17 17:00:55] 2025-04-17 21:00:39,127 | INFO     | current chi2=9.583680629352518 (change=13.97865508496651 %)
[2025-04-17 17:00:55] 2025-04-17 21:00:39,129 | INFO     | right removable region: 682
[2025-04-17 17:00:55] 2025-04-17 21:00:39,130 | INFO     | sum of square deviations: 98797138371.75356
[2025-04-17 17:00:55] 2025-04-17 21:00:39,155 | INFO     | sum of deviations: 761320951093.6981
[2025-04-17 17:00:55] 2025-04-17 21:00:39,155 | INFO     | mean x: 1744902777.2869692
[2025-04-17 17:00:55] 2025-04-17 21:00:39,157 | INFO     | mean y: 2504673.6852122988
[2025-04-17 17:00:55] 2025-04-17 21:00:39,157 | INFO     | -- intersect: -13443543095.143217
[2025-04-17 17:00:55] 2025-04-17 21:00:39,157 | INFO     | intersect: -13443543095.143217
[2025-04-17 17:00:55] 2025-04-17 21:00:39,159 | INFO     | chi2: 7.415516443908597
[2025-04-17 17:00:55] 2025-04-17 21:00:39,159 | INFO     | current chi2=7.415516443908597 (change=33.43969583138533 %)
[2025-04-17 17:00:55] 2025-04-17 21:00:39,161 | INFO     | sum of square deviations: 96642960115.91159
[2025-04-17 17:00:55] 2025-04-17 21:00:39,181 | INFO     | sum of deviations: 605276337246.7078
[2025-04-17 17:00:55] 2025-04-17 21:00:39,182 | INFO     | mean x: 1744902929.7964602
[2025-04-17 17:00:55] 2025-04-17 21:00:39,182 | INFO     | mean y: 2515718.7949852506
[2025-04-17 17:00:55] 2025-04-17 21:00:39,183 | INFO     | -- intersect: -10925838016.76452
[2025-04-17 17:00:55] 2025-04-17 21:00:39,183 | INFO     | intersect: -10925838016.76452
[2025-04-17 17:00:55] 2025-04-17 21:00:39,184 | INFO     | chi2: 5.657055080874856
[2025-04-17 17:00:55] 2025-04-17 21:00:39,186 | INFO     | current chi2=5.657055080874856 (change=23.7132690128172 %)
[2025-04-17 17:00:55] 2025-04-17 21:00:39,186 | INFO     | left removable region: 20
[2025-04-17 17:00:55] 2025-04-17 21:00:39,188 | INFO     | sum of square deviations: 89961209014.88371
[2025-04-17 17:00:55] 2025-04-17 21:00:39,214 | INFO     | sum of deviations: 412004477132.3475
[2025-04-17 17:00:55] 2025-04-17 21:00:39,215 | INFO     | mean x: 1744903051.8172204
[2025-04-17 17:00:55] 2025-04-17 21:00:39,215 | INFO     | mean y: 2542535.688821752
[2025-04-17 17:00:55] 2025-04-17 21:00:39,215 | INFO     | -- intersect: -7988767022.986084
[2025-04-17 17:00:55] 2025-04-17 21:00:39,216 | INFO     | intersect: -7988767022.986084
[2025-04-17 17:00:55] 2025-04-17 21:00:39,217 | INFO     | chi2: 1.160284713258528
[2025-04-17 17:00:55] 2025-04-17 21:00:39,218 | INFO     | -- intersect: -7988767022.986084
[2025-04-17 17:00:55] 2025-04-17 21:00:39,218 | INFO     | current memory leak: 4.58 B/s (using 662 data points, chi2=1.16)
[2025-04-17 17:00:55] 2025-04-17 21:00:39,220 | INFO     | ..............................
[2025-04-17 17:00:55] 2025-04-17 21:00:39,220 | INFO     | . Timing measurements:
[2025-04-17 17:00:55] 2025-04-17 21:00:39,222 | INFO     | . get job = 0 s
[2025-04-17 17:00:55] 2025-04-17 21:00:39,222 | INFO     | . initial setup = 6 s
[2025-04-17 17:00:55] 2025-04-17 21:00:39,224 | INFO     | . payload setup = 69 s
[2025-04-17 17:00:55] 2025-04-17 21:00:39,224 | INFO     | . stage-in = 0 s
[2025-04-17 17:00:55] 2025-04-17 21:00:39,224 | INFO     | . payload execution = 41993 s
[2025-04-17 17:00:55] 2025-04-17 21:00:39,224 | INFO     | . stage-out = 2 s
[2025-04-17 17:00:55] 2025-04-17 21:00:39,226 | INFO     | . log creation = 0 s
[2025-04-17 17:00:55] 2025-04-17 21:00:39,227 | INFO     | ..............................
[2025-04-17 17:00:55] 2025-04-17 21:00:39,460 | INFO     | 
[2025-04-17 17:00:55] 2025-04-17 21:00:39,461 | INFO     | job summary report
[2025-04-17 17:00:55] 2025-04-17 21:00:39,461 | INFO     | --------------------------------------------------
[2025-04-17 17:00:55] 2025-04-17 21:00:39,461 | INFO     | PanDA job id: 6605003902
[2025-04-17 17:00:55] 2025-04-17 21:00:39,462 | INFO     | task id: 44075483
[2025-04-17 17:00:55] 2025-04-17 21:00:39,462 | INFO     | errors: (none)
[2025-04-17 17:00:55] 2025-04-17 21:00:39,462 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-17 17:00:55] 2025-04-17 21:00:39,462 | INFO     | pilot state: finished 
[2025-04-17 17:00:55] 2025-04-17 21:00:39,462 | INFO     | transexitcode: 0
[2025-04-17 17:00:55] 2025-04-17 21:00:39,462 | INFO     | exeerrorcode: 0
[2025-04-17 17:00:55] 2025-04-17 21:00:39,462 | INFO     | exeerrordiag: 
[2025-04-17 17:00:55] 2025-04-17 21:00:39,462 | INFO     | exitcode: 0
[2025-04-17 17:00:55] 2025-04-17 21:00:39,462 | INFO     | exitmsg: OK
[2025-04-17 17:00:55] 2025-04-17 21:00:39,463 | INFO     | cpuconsumptiontime: 55863 s
[2025-04-17 17:00:55] 2025-04-17 21:00:39,463 | INFO     | nevents: 400
[2025-04-17 17:00:55] 2025-04-17 21:00:39,463 | INFO     | neventsw: 0
[2025-04-17 17:00:55] 2025-04-17 21:00:39,463 | INFO     | pid: 2271
[2025-04-17 17:00:55] 2025-04-17 21:00:39,463 | INFO     | pgrp: 2271
[2025-04-17 17:00:55] 2025-04-17 21:00:39,463 | INFO     | corecount: 10
[2025-04-17 17:00:55] 2025-04-17 21:00:39,463 | INFO     | event service: False
[2025-04-17 17:00:55] 2025-04-17 21:00:39,463 | INFO     | sizes: {0: 2426597, 1: 2426852, 2: 2426852, 12: 2426880, 23: 2426908, 34: 2426936, 42: 2427298, 45: 2427354, 42067: 2469138, 42070: 2478079, 42071: 2478135, 42120:
[2025-04-17 17:00:55] 2025-04-17 21:00:39,464 | INFO     | --------------------------------------------------
[2025-04-17 17:00:55] 2025-04-17 21:00:39,464 | INFO     | 
[2025-04-17 17:00:55] 2025-04-17 21:00:39,464 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-04-17 17:00:55] 2025-04-17 21:00:39,715 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-17 17:00:55] 2025-04-17 21:00:39,716 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-17 17:00:55] 2025-04-17 21:00:39,716 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-17 17:00:55] 2025-04-17 21:00:39,716 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-17 17:00:55] 2025-04-17 21:00:39,716 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-17 17:00:55] 2025-04-17 21:00:39,716 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-17 17:00:55] 2025-04-17 21:00:39,716 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-17 17:00:55] 2025-04-17 21:00:39,717 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-17 17:00:55] 2025-04-17 21:00:39,717 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-17 17:00:55] 2025-04-17 21:00:39,717 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-17 17:00:55] 2025-04-17 21:00:39,717 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-17 17:00:55] 2025-04-17 21:00:39,717 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-17 17:00:55] 2025-04-17 21:00:39,717 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-17 17:00:55] 2025-04-17 21:00:39,717 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-17 17:00:55] 2025-04-17 21:00:39,717 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-17 17:00:55] 2025-04-17 21:00:39,717 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-17 17:00:55] 2025-04-17 21:00:39,717 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-17 17:00:55] 2025-04-17 21:00:39,718 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-17 17:00:55] 2025-04-17 21:00:39,718 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-17 17:00:55] 2025-04-17 21:00:39,718 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-17 17:00:55] 2025-04-17 21:00:39,718 | INFO     | job 6605003902 has completed (purged errors)
[2025-04-17 17:00:55] 2025-04-17 21:00:39,718 | INFO     | overall cleanup function is called
[2025-04-17 17:00:55] 2025-04-17 21:00:40,149 | INFO     | PID=31433 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-04-17 17:00:55] 2025-04-17 21:00:40,150 | INFO     | .. there are 13 such processes running
[2025-04-17 17:00:55] 2025-04-17 21:00:40,178 | INFO     | number of running child processes to parent process 2271: 1
[2025-04-17 17:00:55] 2025-04-17 21:00:40,179 | INFO     | maximum number of monitored processes: 7
[2025-04-17 17:00:55] 2025-04-17 21:00:40,179 | INFO     | aborting job monitoring since job object (job id=6605003902) has expired
[2025-04-17 17:00:55] 2025-04-17 21:00:40,739 | INFO     | --- collectZombieJob: --- 10, [2271]
[2025-04-17 17:00:55] 2025-04-17 21:00:40,739 | INFO     | zombie collector waiting for pid 2271
[2025-04-17 17:00:55] 2025-04-17 21:00:40,739 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-17 17:00:55] 2025-04-17 21:00:40,739 | INFO     | collected zombie processes
[2025-04-17 17:00:55] 2025-04-17 21:00:40,740 | INFO     | will attempt to kill all subprocesses of pid=2271
[2025-04-17 17:00:55] 2025-04-17 21:00:41,362 | INFO     | process IDs to be killed: [2271] (in reverse order)
[2025-04-17 17:00:55] 2025-04-17 21:00:41,773 | WARNING  | found no corresponding commands to process id(s)
[2025-04-17 17:00:55] 2025-04-17 21:00:41,773 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-17 17:00:55] 2025-04-17 21:00:41,782 | INFO     | did not find any defunct processes belonging to 2271
[2025-04-17 17:00:55] 2025-04-17 21:00:41,791 | INFO     | did not find any defunct processes belonging to 2271
[2025-04-17 17:00:55] 2025-04-17 21:00:41,792 | INFO     | ready for new job
[2025-04-17 17:00:55] 2025-04-17 21:00:41,792 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-17 17:00:55] 2025-04-17 21:00:41,795 | INFO     | **************************************
[2025-04-17 17:00:55] 2025-04-17 21:00:41,796 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-17 17:00:55] 2025-04-17 21:00:41,796 | INFO     | **************************************
[2025-04-17 17:00:55] 2025-04-17 21:00:41,796 | INFO     | 
[2025-04-17 17:00:55] 2025-04-17 21:00:41,799 | INFO     | architecture information:
[2025-04-17 17:00:55] 2025-04-17 21:00:41,803 | INFO     | executing command: cat /etc/os-release
[2025-04-17 17:00:55] 2025-04-17 21:00:41,932 | INFO     | cat /etc/os-release:
[2025-04-17 17:00:55] NAME="CentOS Linux"
[2025-04-17 17:00:55] VERSION="7 (Core)"
[2025-04-17 17:00:55] ID="centos"
[2025-04-17 17:00:55] ID_LIKE="rhel fedora"
[2025-04-17 17:00:55] VERSION_ID="7"
[2025-04-17 17:00:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-17 17:00:55] ANSI_COLOR="0;31"
[2025-04-17 17:00:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-17 17:00:55] HOME_URL="https://www.centos.org/"
[2025-04-17 17:00:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-17 17:00:55] 
[2025-04-17 17:00:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-17 17:00:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-17 17:00:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-17 17:00:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-17 17:00:55] 
[2025-04-17 17:00:55] 2025-04-17 21:00:41,937 | INFO     | **************************************
[2025-04-17 17:00:55] 2025-04-17 21:00:42,441 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-04-17 17:00:55] 2025-04-17 21:00:42,554 | INFO     | sufficient remaining disk space (57113837568 B)
[2025-04-17 17:00:55] 2025-04-17 21:00:42,554 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-17 17:00:55] 2025-04-17 21:00:42,554 | INFO     | current server update state: UPDATING_FINAL
[2025-04-17 17:00:55] 2025-04-17 21:00:42,554 | INFO     | update_server=False
[2025-04-17 17:00:55] 2025-04-17 21:00:42,554 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-17 17:00:55] 2025-04-17 21:00:42,555 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-17 17:00:55] 2025-04-17 21:00:42,555 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-17 17:00:55] 2025-04-17 21:00:42,556 | INFO     | found 0 job(s) in 20 queues
[2025-04-17 17:00:55] 2025-04-17 21:00:42,556 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-17 17:00:55] 2025-04-17 21:00:42,556 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-17 17:00:55] 2025-04-17 21:00:42,692 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-04-17 17:00:55] 2025-04-17 21:00:42,692 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-04-17 17:00:55] 2025-04-17 21:00:42,692 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-17 17:00:55] 2025-04-17 21:00:42,692 | INFO     | will abort loop
[2025-04-17 17:00:55] 2025-04-17 21:00:42,777 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-17 17:00:55] 2025-04-17 21:00:43,277 | INFO     | all data control threads have been joined
[2025-04-17 17:00:55] 2025-04-17 21:00:43,560 | INFO     | [job] retrieve thread has finished
[2025-04-17 17:00:55] 2025-04-17 21:00:43,698 | INFO     | [job] job monitor thread has finished
[2025-04-17 17:00:55] 2025-04-17 21:00:43,741 | INFO     | all job control threads have been joined
[2025-04-17 17:00:55] 2025-04-17 21:00:43,788 | INFO     | [payload] validate_post thread has finished
[2025-04-17 17:00:55] 2025-04-17 21:00:43,899 | INFO     | all payload control threads have been joined
[2025-04-17 17:00:55] 2025-04-17 21:00:43,966 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-17 17:00:55] 2025-04-17 21:00:43,969 | INFO     | [job] validate thread has finished
[2025-04-17 17:00:55] 2025-04-17 21:00:44,283 | INFO     | [data] control thread has finished
[2025-04-17 17:00:55] 2025-04-17 21:00:44,289 | INFO     | [data] copytool_in thread has finished
[2025-04-17 17:00:55] 2025-04-17 21:00:44,309 | INFO     | [payload] validate_pre thread has finished
[2025-04-17 17:00:55] 2025-04-17 21:00:44,322 | INFO     | [payload] failed_post thread has finished
[2025-04-17 17:00:55] 2025-04-17 21:00:44,477 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-17 17:00:55] 2025-04-17 21:00:44,543 | INFO     | [payload] execute_payloads thread has finished
[2025-04-17 17:00:55] 2025-04-17 21:00:44,585 | INFO     | [job] create_data_payload thread has finished
[2025-04-17 17:00:55] 2025-04-17 21:00:44,761 | INFO     | [job] control thread has finished
[2025-04-17 17:00:55] 2025-04-17 21:00:44,785 | INFO     | [data] copytool_out thread has finished
[2025-04-17 17:00:55] 2025-04-17 21:00:44,912 | INFO     | [payload] control thread has finished
[2025-04-17 17:00:55] 2025-04-17 21:00:45,484 | INFO     | [job] queue monitor thread has finished
[2025-04-17 17:00:55] 2025-04-17 21:00:46,570 | INFO     | [data] queue_monitor thread has finished
[2025-04-17 17:00:55] 2025-04-17 21:00:48,277 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140359247525696)>', '<ExcThread(monitor, started 140358583314176)>']
[2025-04-17 17:00:55] 2025-04-17 21:00:48,624 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-17 17:00:55] 2025-04-17 21:00:48,624 | INFO     | [monitor] control thread has ended
[2025-04-17 17:00:55] 2025-04-17 21:00:53,303 | INFO     | all workflow threads have been joined
[2025-04-17 17:00:55] 2025-04-17 21:00:53,303 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-17 17:00:55] 2025-04-17 21:00:53,304 | INFO     | traces error code: 0
[2025-04-17 17:00:55] 2025-04-17 21:00:53,304 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-17 17:00:55] 2025-04-17 21:00:53,668 [wrapper] ==== pilot stdout END ====
[2025-04-17 17:00:55] 2025-04-17 21:00:53,706 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-17 17:00:55] 2025-04-17 21:00:53,741 [wrapper] pilotpid: 31433
[2025-04-17 17:00:55] 2025-04-17 21:00:53,765 [wrapper] Pilot exit status: 0
[2025-04-17 17:00:55] 2025-04-17 21:00:53,875 [wrapper] pandaids: 6605003902
[2025-04-17 17:00:55] 2025-04-17 21:00:53,975 [wrapper] cleanup supervisor_pilot 26329 31434
[2025-04-17 17:00:55] 2025-04-17 21:00:53,980 [wrapper] Test setup, not cleaning
[2025-04-17 17:00:55] 2025-04-17 21:00:54,026 [wrapper] apfmon messages muted
[2025-04-17 17:00:55] 2025-04-17 21:00:54,030 [wrapper] ==== wrapper stdout END ====
[2025-04-17 17:00:55] 2025-04-17 21:00:54,035 [wrapper] ==== wrapper stderr END ====
[2025-04-17 17:00:55]  *** Error codes and diagnostics ***
[2025-04-17 17:00:55]     "exeErrorCode": 0,
[2025-04-17 17:00:55]     "exeErrorDiag": "",
[2025-04-17 17:00:55]     "pilotErrorCode": 0,
[2025-04-17 17:00:55]     "pilotErrorDiag": "",
[2025-04-17 17:00:55]  *** Listing of results directory ***
[2025-04-17 17:00:55] total 416320
[2025-04-17 17:00:55] -rw-r--r-- 1 boincer umatlas    495897 Apr 17 02:03 pilot3.tar.gz
[2025-04-17 17:00:55] -rw-r--r-- 1 boincer umatlas      5111 Apr 17 02:19 queuedata.json
[2025-04-17 17:00:55] -rwx------ 1 boincer umatlas     37140 Apr 17 02:19 runpilot2-wrapper.sh
[2025-04-17 17:00:55] -rw-r--r-- 1 boincer umatlas       100 Apr 17 05:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-17 17:00:55] -rwxr-xr-x 1 boincer umatlas      7986 Apr 17 05:15 run_atlas
[2025-04-17 17:00:55] -rw-r--r-- 1 boincer umatlas       105 Apr 17 05:15 job.xml
[2025-04-17 17:00:55] -rw-r--r-- 2 boincer umatlas 221304551 Apr 17 05:15 EVNT.44075481._002012.pool.root.1
[2025-04-17 17:00:55] -rw-r--r-- 2 boincer umatlas     17569 Apr 17 05:15 start_atlas.sh
[2025-04-17 17:00:55] drwxrwx--x 2 boincer umatlas      4096 Apr 17 05:15 shared
[2025-04-17 17:00:55] -rw-r--r-- 2 boincer umatlas    508890 Apr 17 05:15 input.tar.gz
[2025-04-17 17:00:55] -rw-r--r-- 1 boincer umatlas         0 Apr 17 05:15 boinc_lockfile
[2025-04-17 17:00:55] -rw-r--r-- 1 boincer umatlas      2579 Apr 17 05:15 pandaJob.out
[2025-04-17 17:00:55] -rw------- 1 boincer umatlas       424 Apr 17 05:15 setup.sh.local
[2025-04-17 17:00:55] -rw------- 1 boincer umatlas    990239 Apr 17 05:17 agis_schedconf.cvmfs.json
[2025-04-17 17:00:55] drwx------ 4 boincer umatlas      4096 Apr 17 05:17 pilot3
[2025-04-17 17:00:55] -rw-r--r-- 1 boincer umatlas      6144 Apr 17 16:55 init_data.xml
[2025-04-17 17:00:55] -rw------- 1 boincer umatlas 193536683 Apr 17 16:58 HITS.44075483._051563.pool.root.1
[2025-04-17 17:00:55] -rw-r--r-- 1 boincer umatlas       531 Apr 17 16:58 boinc_task_state.xml
[2025-04-17 17:00:55] -rw------- 1 boincer umatlas      1054 Apr 17 16:59 memory_monitor_summary.json
[2025-04-17 17:00:55] -rw------- 1 boincer umatlas   1618536 Apr 17 16:59 agis_ddmendpoints.agis.ALL.json
[2025-04-17 17:00:55] -rw------- 1 boincer umatlas    654757 Apr 17 16:59 log.44075483._051563.job.log.tgz.1
[2025-04-17 17:00:55] -rw------- 1 boincer umatlas        95 Apr 17 17:00 pilot_heartbeat.json
[2025-04-17 17:00:55] -rw-r--r-- 1 boincer umatlas      8192 Apr 17 17:00 boinc_mmap_file
[2025-04-17 17:00:55] -rw-r--r-- 1 boincer umatlas        28 Apr 17 17:00 wrapper_checkpoint.txt
[2025-04-17 17:00:55] -rw------- 1 boincer umatlas      7752 Apr 17 17:00 heartbeat.json
[2025-04-17 17:00:55] -rw------- 1 boincer umatlas      4662 Apr 17 17:00 pilotlog.txt
[2025-04-17 17:00:55] -rw------- 1 boincer umatlas   3150363 Apr 17 17:00 log.44075483._051563.job.log.1
[2025-04-17 17:00:55] -rw------- 1 boincer umatlas       357 Apr 17 17:00 output.list
[2025-04-17 17:00:55] -rw-r--r-- 1 boincer umatlas       620 Apr 17 17:00 runtime_log
[2025-04-17 17:00:55] -rw------- 1 boincer umatlas   3819520 Apr 17 17:00 result.tar.gz
[2025-04-17 17:00:55] -rw-r--r-- 1 boincer umatlas     11016 Apr 17 17:00 runtime_log.err
[2025-04-17 17:00:55] -rw------- 1 boincer umatlas       664 Apr 17 17:00 gINMDmRmXP7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmpEcLDm8k8pen.diag
[2025-04-17 17:00:55] -rw-r--r-- 1 boincer umatlas     21478 Apr 17 17:00 stderr.txt
[2025-04-17 17:00:55] HITS file was successfully produced:
[2025-04-17 17:00:55] -rw------- 1 boincer umatlas 193536683 Apr 17 16:58 shared/HITS.pool.root.1
[2025-04-17 17:00:55]  *** Contents of shared directory: ***
[2025-04-17 17:00:55] total 409380
[2025-04-17 17:00:55] -rw-r--r-- 2 boincer umatlas 221304551 Apr 17 05:15 ATLAS.root_0
[2025-04-17 17:00:55] -rw-r--r-- 2 boincer umatlas     17569 Apr 17 05:15 start_atlas.sh
[2025-04-17 17:00:55] -rw-r--r-- 2 boincer umatlas    508890 Apr 17 05:15 input.tar.gz
[2025-04-17 17:00:55] -rw------- 1 boincer umatlas 193536683 Apr 17 16:58 HITS.pool.root.1
[2025-04-17 17:00:55] -rw------- 1 boincer umatlas   3819520 Apr 17 17:00 result.tar.gz
17:00:57 (24806): run_atlas exited; CPU time 56787.810967
17:00:57 (24806): called boinc_finish(0)

</stderr_txt>
]]>

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