Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-19 12:58:46 (45413): Detected: vboxwrapper 26206
2025-04-19 12:58:46 (45413): Detected: BOINC client v8.0.2
2025-04-19 12:58:47 (45413): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-04-19 12:58:47 (45413): Detected: Sandbox Configuration Enabled
2025-04-19 12:58:48 (45413): Successfully copied 'init_data.xml' to the shared directory.
2025-04-19 12:58:49 (45413): Create VM. (boinc_51970cdfc54dea4d, slot#0)
2025-04-19 12:58:50 (45413): Setting Memory Size for VM. (4400MB)
2025-04-19 12:58:50 (45413): Setting CPU Count for VM. (4)
2025-04-19 12:58:51 (45413): Setting Chipset Options for VM.
2025-04-19 12:58:51 (45413): Setting Graphics Controller Options for VM.
2025-04-19 12:58:52 (45413): Setting Boot Options for VM.
2025-04-19 12:58:53 (45413): Setting Network Configuration for NAT.
2025-04-19 12:58:53 (45413): Enabling VM Network Access.
2025-04-19 12:58:54 (45413): Disabling USB Support for VM.
2025-04-19 12:58:54 (45413): Disabling COM Port Support for VM.
2025-04-19 12:58:55 (45413): Disabling Audio Support for VM.
2025-04-19 12:58:56 (45413): Disabling Clipboard Support for VM.
2025-04-19 12:58:56 (45413): Disabling Drag and Drop Support for VM.
2025-04-19 12:58:57 (45413): Adding storage controller(s) to VM.
2025-04-19 12:58:57 (45413): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-19 12:59:02 (45413): Adding VirtualBox Guest Additions to VM.
2025-04-19 12:59:03 (45413): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-19 12:59:03 (45413): forwarding host port 52359 to guest port 80
2025-04-19 12:59:04 (45413): Enabling remote desktop for VM.
2025-04-19 12:59:04 (45413): Required extension pack not installed, remote desktop not enabled.
2025-04-19 12:59:04 (45413): Enabling shared directory for VM.
2025-04-19 12:59:05 (45413): Starting VM using VBoxManage interface. (boinc_51970cdfc54dea4d, slot#0)
2025-04-19 12:59:12 (45413): Successfully started VM. (PID = '45497')
2025-04-19 12:59:12 (45413): Reporting VM Process ID to BOINC.
2025-04-19 12:59:12 (45413): Guest Log: BIOS: VirtualBox 7.1.6
2025-04-19 12:59:12 (45413): Guest Log: CPUID EDX: 0x178bfbff
2025-04-19 12:59:12 (45413): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-19 12:59:12 (45413): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-19 12:59:12 (45413): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-19 12:59:12 (45413): Detected: Web Application Enabled (http://localhost:52359)
2025-04-19 12:59:12 (45413): Preference change detected
2025-04-19 12:59:12 (45413): Setting CPU throttle for VM. (100%)
2025-04-19 12:59:12 (45413): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-19 12:59:14 (45413): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-19 12:59:14 (45413): Guest Log: BIOS: Booting from Hard Disk...
2025-04-19 12:59:17 (45413): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-19 12:59:17 (45413): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-19 12:59:17 (45413): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-19 12:59:17 (45413): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-19 12:59:17 (45413): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-19 12:59:17 (45413): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-19 12:59:17 (45413): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-19 12:59:17 (45413): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-19 12:59:17 (45413): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-19 12:59:17 (45413): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-19 12:59:17 (45413): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-19 12:59:17 (45413): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-19 12:59:17 (45413): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-19 12:59:17 (45413): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-19 12:59:17 (45413): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-19 12:59:17 (45413): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-19 12:59:17 (45413): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-19 12:59:17 (45413): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-19 12:59:17 (45413): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-19 12:59:17 (45413): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-19 12:59:17 (45413): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-19 12:59:17 (45413): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-19 12:59:17 (45413): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-19 12:59:17 (45413): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-19 12:59:17 (45413): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-19 12:59:17 (45413): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-19 12:59:17 (45413): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-19 12:59:17 (45413): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-19 12:59:17 (45413): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-19 12:59:17 (45413): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-19 12:59:17 (45413): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-19 12:59:17 (45413): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-19 12:59:28 (45413): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-19 12:59:28 (45413): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-19 12:59:45 (45413): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-19 12:59:45 (45413): Guest Log: 00:00:00.000234 main     Log opened 2025-04-19T02:59:44.503635000Z
2025-04-19 12:59:45 (45413): Guest Log: 00:00:00.000425 main     OS Product: Linux
2025-04-19 12:59:45 (45413): Guest Log: 00:00:00.000511 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-19 12:59:45 (45413): Guest Log: 00:00:00.000590 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-19 12:59:45 (45413): Guest Log: 00:00:00.000670 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-19 12:59:45 (45413): Guest Log: 00:00:00.000671 main     Process ID: 1316
2025-04-19 12:59:45 (45413): Guest Log: 00:00:00.000672 main     Package type: LINUX_64BITS_GENERIC
2025-04-19 12:59:45 (45413): Guest Log: 00:00:00.004021 main     5.2.32 r132073 started. Verbose level = 0
2025-04-19 12:59:45 (45413): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-19 12:59:45 (45413): Guest Log: [INFO] Mounting shared directory
2025-04-19 12:59:45 (45413): Guest Log: [INFO] Checking for init_data.xml
2025-04-19 13:00:00 (45413): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-19 13:00:00 (45413): Guest Log: [INFO] Detected branch: prod
2025-04-19 13:00:02 (45413): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-19 13:00:02 (45413): Guest Log: Copying input files
2025-04-19 13:00:07 (45413): Guest Log: Copied input files into RunAtlas.
2025-04-19 13:00:08 (45413): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-19 13:00:08 (45413): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-19 13:00:08 (45413): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-19 13:00:08 (45413): Guest Log: Further information can be found at the LHC@home message board.
2025-04-19 13:00:24 (45413): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-19 13:00:25 (45413): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-19 13:00:25 (45413): Guest Log: 2.6.3.0 1595 0 30012 145023 3 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-19 13:00:26 (45413): Guest Log: copied the webapp to /var/www
2025-04-19 13:00:26 (45413): Guest Log: ATHENA_PROC_NUMBER=4
2025-04-19 13:00:26 (45413): Guest Log: ATHENA_CORE_NUMBER=4
2025-04-19 13:00:27 (45413): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-19 13:00:27 (45413): Guest Log:  *** Starting ATLAS job. (PandaID=6604953669 taskID=44075483) ***
2025-04-19 13:15:27 (45413): VM state change detected. (old = 'running', new = 'paused')
2025-04-19 13:18:27 (45413): VM state change detected. (old = 'paused', new = 'running')
2025-04-19 14:42:27 (45413): Status Report: Elapsed Time: '6000.718031'
2025-04-19 14:42:27 (45413): Status Report: CPU Time: '16123.720000'
2025-04-19 16:22:44 (45413): Status Report: Elapsed Time: '12001.058673'
2025-04-19 16:22:44 (45413): Status Report: CPU Time: '38812.630000'
2025-04-19 18:03:05 (45413): Status Report: Elapsed Time: '18001.335620'
2025-04-19 18:03:05 (45413): Status Report: CPU Time: '61519.690000'
2025-04-19 19:43:23 (45413): Status Report: Elapsed Time: '24001.414855'
2025-04-19 19:43:23 (45413): Status Report: CPU Time: '84132.450000'
2025-04-19 21:23:43 (45413): Status Report: Elapsed Time: '30001.472831'
2025-04-19 21:23:43 (45413): Status Report: CPU Time: '106536.910000'
2025-04-19 21:24:45 (45413): Guest Log:  *** Job finished ***
2025-04-19 21:24:45 (45413): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-19 21:24:45 (45413): Guest Log: 2025-04-19 11:22:30,519 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-04-19 21:24:45 (45413): Guest Log: 2025-04-19 11:22:30,581 | INFO     | [data] copytool_out thread has finished
2025-04-19 21:24:45 (45413): Guest Log: 2025-04-19 11:22:34,528 | INFO     | [data] queue_monitor thread has finished
2025-04-19 21:24:45 (45413): Guest Log: 2025-04-19 11:22:34,547 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140347649693504)>', '<ExcThread(monitor, started 140346746976000)>']
2025-04-19 21:24:45 (45413): Guest Log: 2025-04-19 11:22:34,714 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-19 21:24:45 (45413): Guest Log: 2025-04-19 11:22:34,714 | INFO     | [monitor] control thread has ended
2025-04-19 21:24:45 (45413): Guest Log: 2025-04-19 11:22:39,553 | INFO     | all workflow threads have been joined
2025-04-19 21:24:45 (45413): Guest Log: 2025-04-19 11:22:39,553 | INFO     | end of generic workflow (traces error code: 0)
2025-04-19 21:24:45 (45413): Guest Log: 2025-04-19 11:22:39,554 | INFO     | traces error code: 0
2025-04-19 21:24:45 (45413): Guest Log: 2025-04-19 11:22:39,554 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-19 21:24:45 (45413): Guest Log: 2025-04-19 11:22:39,744 [wrapper] ==== pilot stdout END ====
2025-04-19 21:24:45 (45413): Guest Log: 2025-04-19 11:22:39,771 [wrapper] ==== wrapper stdout RESUME ====
2025-04-19 21:24:45 (45413): Guest Log: 2025-04-19 11:22:39,786 [wrapper] pilotpid: 5964
2025-04-19 21:24:45 (45413): Guest Log: 2025-04-19 11:22:39,800 [wrapper] Pilot exit status: 0
2025-04-19 21:24:45 (45413): Guest Log: 2025-04-19 11:22:40,546 [wrapper] pandaids: 6604953669
2025-04-19 21:24:45 (45413): Guest Log: 2025-04-19 11:22:40,712 [wrapper] cleanup supervisor_pilot 28780 5965
2025-04-19 21:24:45 (45413): Guest Log: 2025-04-19 11:22:40,740 [wrapper] Test setup, not cleaning
2025-04-19 21:24:45 (45413): Guest Log: 2025-04-19 11:22:40,768 [wrapper] apfmon messages muted
2025-04-19 21:24:45 (45413): Guest Log: 2025-04-19 11:22:40,794 [wrapper] ==== wrapper stdout END ====
2025-04-19 21:24:45 (45413): Guest Log: 2025-04-19 11:22:40,842 [wrapper] ==== wrapper stderr END ====
2025-04-19 21:24:45 (45413): Guest Log:  *** Error codes and diagnostics ***
2025-04-19 21:24:45 (45413): Guest Log:     "exeErrorCode": 0,
2025-04-19 21:24:45 (45413): Guest Log:     "exeErrorDiag": "",
2025-04-19 21:24:45 (45413): Guest Log:     "pilotErrorCode": 0,
2025-04-19 21:24:45 (45413): Guest Log:     "pilotErrorDiag": "",
2025-04-19 21:24:45 (45413): Guest Log:  *** Listing of results directory ***
2025-04-19 21:24:45 (45413): Guest Log: total 200020
2025-04-19 21:24:45 (45413): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 17 04:58 pilot3.tar.gz
2025-04-19 21:24:45 (45413): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 17 05:05 queuedata.json
2025-04-19 21:24:45 (45413): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 17 05:07 runpilot2-wrapper.sh
2025-04-19 21:24:45 (45413): Guest Log: -rw-r-----. 1 atlas atlas     17569 Apr 19 03:00 start_atlas.sh
2025-04-19 21:24:45 (45413): Guest Log: -rw-r-----. 1 atlas atlas    508885 Apr 19 03:00 input.tar.gz
2025-04-19 21:24:45 (45413): Guest Log: -rw-r--r--. 1 atlas atlas      6161 Apr 19 03:00 init_data.xml
2025-04-19 21:24:45 (45413): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 19 03:00 EVNT.44075481._001983.pool.root.1 -> /data/./ATLAS.root_0
2025-04-19 21:24:45 (45413): Guest Log: -rw-r--r--. 1 atlas atlas      2579 Apr 19 03:00 pandaJob.out
2025-04-19 21:24:45 (45413): Guest Log: -rw-------. 1 atlas atlas       424 Apr 19 03:00 setup.sh.local
2025-04-19 21:24:45 (45413): Guest Log: -rw-------. 1 atlas atlas    991292 Apr 19 03:04 agis_schedconf.cvmfs.json
2025-04-19 21:24:45 (45413): Guest Log: drwx------. 4 atlas atlas      4096 Apr 19 03:05 pilot3
2025-04-19 21:24:45 (45413): Guest Log: -rw-------. 1 atlas atlas 196514426 Apr 19 11:21 HITS.44075483._050806.pool.root.1
2025-04-19 21:24:45 (45413): Guest Log: -rw-------. 1 atlas atlas      1030 Apr 19 11:21 memory_monitor_summary.json
2025-04-19 21:24:45 (45413): Guest Log: -rw-------. 1 atlas atlas   1618536 Apr 19 11:22 agis_ddmendpoints.agis.ALL.json
2025-04-19 21:24:45 (45413): Guest Log: -rw-------. 1 atlas atlas    418980 Apr 19 11:22 log.44075483._050806.job.log.tgz.1
2025-04-19 21:24:45 (45413): Guest Log: -rw-------. 1 atlas atlas        95 Apr 19 11:22 pilot_heartbeat.json
2025-04-19 21:24:45 (45413): Guest Log: -rw-------. 1 atlas atlas      7691 Apr 19 11:22 heartbeat.json
2025-04-19 21:24:45 (45413): Guest Log: -rw-------. 1 atlas atlas      4413 Apr 19 11:22 pilotlog.txt
2025-04-19 21:24:45 (45413): Guest Log: -rw-------. 1 atlas atlas   1832965 Apr 19 11:22 log.44075483._050806.job.log.1
2025-04-19 21:24:45 (45413): Guest Log: -rw-------. 1 atlas atlas       357 Apr 19 11:22 output.list
2025-04-19 21:24:45 (45413): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 19 11:22 runtime_log
2025-04-19 21:24:45 (45413): Guest Log: -rw-------. 1 atlas atlas   2273280 Apr 19 11:22 result.tar.gz
2025-04-19 21:24:45 (45413): Guest Log: -rw-------. 1 atlas atlas       670 Apr 19 11:22 Yq4KDm8dWP7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmr6bLDm0LP5wm.diag
2025-04-19 21:24:45 (45413): Guest Log: -rw-r--r--. 1 atlas atlas     10962 Apr 19 11:22 runtime_log.err
2025-04-19 21:24:45 (45413): Guest Log: Looking for outputfile HITS.44075483._050806.pool.root.1
2025-04-19 21:24:45 (45413): Guest Log: HITS file was successfully produced
2025-04-19 21:24:45 (45413): Guest Log: -rw-------. 1 atlas atlas 196514426 Apr 19 11:21 /home/atlas/RunAtlas/HITS.44075483._050806.pool.root.1
2025-04-19 21:24:45 (45413): Guest Log: Successfully finished the ATLAS job!
2025-04-19 21:24:45 (45413): Guest Log: Copying the results back to the shared directory!
2025-04-19 21:24:46 (45413): Guest Log:  *** Contents of shared directory: ***
2025-04-19 21:24:46 (45413): Guest Log: total 237308
2025-04-19 21:24:46 (45413): Guest Log: -rw-rw----. 1 root root 227429791 Apr 19 02:58 ATLAS.root_0
2025-04-19 21:24:46 (45413): Guest Log: -rw-rw-r--. 1 root root      6161 Apr 19 02:58 init_data.xml
2025-04-19 21:24:46 (45413): Guest Log: -rw-rw----. 1 root root    508885 Apr 19 02:58 input.tar.gz
2025-04-19 21:24:46 (45413): Guest Log: -rw-r--r--. 1 root root   2273280 Apr 19  2025 result.tar.gz
2025-04-19 21:24:46 (45413): Guest Log: -rw-rw----. 1 root root     17569 Apr 19 02:58 start_atlas.sh
2025-04-19 21:24:46 (45413): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-19 21:24:46 (45413): VM Completion File Detected.
2025-04-19 21:24:46 (45413): Powering off VM.
2025-04-19 21:24:47 (45413): Successfully stopped VM.
2025-04-19 21:24:47 (45413): Deregistering VM. (boinc_51970cdfc54dea4d, slot#0)
2025-04-19 21:24:48 (45413): Removing network bandwidth throttle group from VM.
2025-04-19 21:24:48 (45413): Removing VM from VirtualBox.
21:24:54 (45413): called boinc_finish(0)

</stderr_txt>
]]>

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