Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:16:38 (1930080): wrapper (7.7.26015): starting
11:16:38 (1930080): wrapper: running run_atlas (--nthreads 4)
[2025-04-17 11:16:38] Arguments: --nthreads 4
[2025-04-17 11:16:38] Threads: 4
[2025-04-17 11:16:38] Checking for CVMFS
[2025-04-17 11:16:38] No cvmfs_config command found, will try listing directly
[2025-04-17 11:16:38] CVMFS is ok
[2025-04-17 11:16:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-17 11:16:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-17 11:16:38] Further information can be found at the LHC@home message board.
[2025-04-17 11:16:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-17 11:16:38] Checking for apptainer binary...
[2025-04-17 11:16:38] which: no apptainer in ((null))
[2025-04-17 11:16:38] apptainer is not installed, using version from CVMFS
[2025-04-17 11:16:38] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-17 11:16:38] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot24/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut05.grid.cesnet.cz
[2025-04-17 11:16:38] apptainer works
[2025-04-17 11:16:38] Set ATHENA_PROC_NUMBER=4
[2025-04-17 11:16:38] Set ATHENA_CORE_NUMBER=4
[2025-04-17 11:16:38] Starting ATLAS job with PandaID=6602370714
[2025-04-17 11:16:38] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot24/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-18 12:25:09]  *** The last 200 lines of the pilot log: ***
[2025-04-18 12:25:09] 2025-04-18 10:24:49,551 | INFO     | number of running child processes to parent process 1943788: 1
[2025-04-18 12:25:09] 2025-04-18 10:24:49,551 | INFO     | maximum number of monitored processes: 10
[2025-04-18 12:25:09] 2025-04-18 10:24:51,531 | INFO     | job 6602370714 has state=finished
[2025-04-18 12:25:09] 2025-04-18 10:24:51,531 | INFO     | preparing for final server update for job 6602370714 in state='finished'
[2025-04-18 12:25:09] 2025-04-18 10:24:51,532 | INFO     | this job has now completed (state=finished)
[2025-04-18 12:25:09] 2025-04-18 10:24:51,532 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-18 12:25:09] 2025-04-18 10:24:51,532 | INFO     | log transfer has been attempted: DONE
[2025-04-18 12:25:09] 2025-04-18 10:24:51,532 | INFO     | job 6602370714 has finished - writing final server update
[2025-04-18 12:25:09] 2025-04-18 10:24:51,533 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3461432/.job.ad'
[2025-04-18 12:25:09] 2025-04-18 10:24:51,533 | INFO     | total number of processed events: 1000 (read)
[2025-04-18 12:25:09] 2025-04-18 10:24:51,537 | INFO     | executing command: lscpu
[2025-04-18 12:25:09] 2025-04-18 10:24:51,596 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-18 12:25:09] 2025-04-18 10:24:52,055 | INFO     | monitor loop #6611: job 0:6602370714 is in state 'finished'
[2025-04-18 12:25:09] 2025-04-18 10:24:52,055 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-18 12:25:09] 2025-04-18 10:24:52,288 | INFO     | PID=1933857 has CPU usage=15.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-04-18 12:25:09] 2025-04-18 10:24:52,288 | INFO     | .. there are 12 such processes running
[2025-04-18 12:25:09] 2025-04-18 10:24:54,558 | INFO     | monitor loop #6612: job 0:6602370714 is in state 'finished'
[2025-04-18 12:25:09] 2025-04-18 10:24:54,558 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-18 12:25:09] 2025-04-18 10:24:55,253 | INFO     | CPU arch script returned: x86-64-v4
[2025-04-18 12:25:09] 2025-04-18 10:24:55,254 | INFO     | using path: /scratch/boinc/var/slot24/slots/0/PanDA_Pilot-6602370714/memory_monitor_summary.json (trf name=prmon)
[2025-04-18 12:25:09] 2025-04-18 10:24:55,254 | INFO     | extracted standard info from prmon json
[2025-04-18 12:25:09] 2025-04-18 10:24:55,255 | INFO     | extracted standard memory fields from prmon json
[2025-04-18 12:25:09] 2025-04-18 10:24:55,255 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-18 12:25:09] 2025-04-18 10:24:55,279 | INFO     | fitting pss+swap vs Time
[2025-04-18 12:25:09] 2025-04-18 10:24:55,281 | INFO     | sum of square deviations: 1011350467582.0
[2025-04-18 12:25:09] 2025-04-18 10:24:55,322 | INFO     | sum of deviations: 3716649838619.0
[2025-04-18 12:25:09] 2025-04-18 10:24:55,322 | INFO     | mean x: 1744926638.0
[2025-04-18 12:25:09] 2025-04-18 10:24:55,323 | INFO     | mean y: 2729544.753202967
[2025-04-18 12:25:09] 2025-04-18 10:24:55,323 | INFO     | -- intersect: -6409766929.4216795
[2025-04-18 12:25:09] 2025-04-18 10:24:55,323 | INFO     | intersect: -6409766929.4216795
[2025-04-18 12:25:09] 2025-04-18 10:24:55,325 | INFO     | chi2: 14.691398603462254
[2025-04-18 12:25:09] 2025-04-18 10:24:55,326 | INFO     | sum of square deviations: 1001155476429.5
[2025-04-18 12:25:09] 2025-04-18 10:24:55,366 | INFO     | sum of deviations: 4174004753535.0
[2025-04-18 12:25:09] 2025-04-18 10:24:55,367 | INFO     | mean x: 1744926485.5
[2025-04-18 12:25:09] 2025-04-18 10:24:55,367 | INFO     | mean y: 2736386.5723951287
[2025-04-18 12:25:09] 2025-04-18 10:24:55,367 | INFO     | -- intersect: -7272189053.601235
[2025-04-18 12:25:09] 2025-04-18 10:24:55,367 | INFO     | intersect: -7272189053.601235
[2025-04-18 12:25:09] 2025-04-18 10:24:55,369 | INFO     | chi2: 11.847077522713247
[2025-04-18 12:25:09] 2025-04-18 10:24:55,369 | INFO     | current chi2=11.847077522713247 (change=19.360451360149593 %)
[2025-04-18 12:25:09] 2025-04-18 10:24:55,369 | INFO     | right removable region: 1477
[2025-04-18 12:25:09] 2025-04-18 10:24:55,371 | INFO     | sum of square deviations: 1001155476429.5
[2025-04-18 12:25:09] 2025-04-18 10:24:55,411 | INFO     | sum of deviations: 3249898456130.9995
[2025-04-18 12:25:09] 2025-04-18 10:24:55,411 | INFO     | mean x: 1744926790.5
[2025-04-18 12:25:09] 2025-04-18 10:24:55,412 | INFO     | mean y: 2736524.3748308527
[2025-04-18 12:25:09] 2025-04-18 10:24:55,412 | INFO     | -- intersect: -5661553404.62992
[2025-04-18 12:25:09] 2025-04-18 10:24:55,412 | INFO     | intersect: -5661553404.62992
[2025-04-18 12:25:09] 2025-04-18 10:24:55,413 | INFO     | chi2: 11.72766667273923
[2025-04-18 12:25:09] 2025-04-18 10:24:55,414 | INFO     | current chi2=11.72766667273923 (change=20.173245656983088 %)
[2025-04-18 12:25:09] 2025-04-18 10:24:55,414 | INFO     | left removable region: 10
[2025-04-18 12:25:09] 2025-04-18 10:24:55,415 | INFO     | sum of square deviations: 978968152518.0
[2025-04-18 12:25:09] 2025-04-18 10:24:55,455 | INFO     | sum of deviations: 3448021129855.0005
[2025-04-18 12:25:09] 2025-04-18 10:24:55,455 | INFO     | mean x: 1744926760.0
[2025-04-18 12:25:09] 2025-04-18 10:24:55,455 | INFO     | mean y: 2750743.677573279
[2025-04-18 12:25:09] 2025-04-18 10:24:55,455 | INFO     | -- intersect: -6143051163.212141
[2025-04-18 12:25:09] 2025-04-18 10:24:55,455 | INFO     | intersect: -6143051163.212141
[2025-04-18 12:25:09] 2025-04-18 10:24:55,457 | INFO     | chi2: 6.291352114682568
[2025-04-18 12:25:09] 2025-04-18 10:24:55,457 | INFO     | -- intersect: -6143051163.212141
[2025-04-18 12:25:09] 2025-04-18 10:24:55,457 | INFO     | current memory leak: 3.52 B/s (using 1467 data points, chi2=6.29)
[2025-04-18 12:25:09] 2025-04-18 10:24:55,459 | INFO     | ..............................
[2025-04-18 12:25:09] 2025-04-18 10:24:55,459 | INFO     | . Timing measurements:
[2025-04-18 12:25:09] 2025-04-18 10:24:55,459 | INFO     | . get job = 0 s
[2025-04-18 12:25:09] 2025-04-18 10:24:55,459 | INFO     | . initial setup = 1 s
[2025-04-18 12:25:09] 2025-04-18 10:24:55,459 | INFO     | . payload setup = 10 s
[2025-04-18 12:25:09] 2025-04-18 10:24:55,459 | INFO     | . stage-in = 0 s
[2025-04-18 12:25:09] 2025-04-18 10:24:55,459 | INFO     | . payload execution = 90450 s
[2025-04-18 12:25:09] 2025-04-18 10:24:55,459 | INFO     | . stage-out = 2 s
[2025-04-18 12:25:09] 2025-04-18 10:24:55,460 | INFO     | . log creation = 0 s
[2025-04-18 12:25:09] 2025-04-18 10:24:55,460 | INFO     | ..............................
[2025-04-18 12:25:09] 2025-04-18 10:24:55,754 | INFO     | 
[2025-04-18 12:25:09] 2025-04-18 10:24:55,754 | INFO     | job summary report
[2025-04-18 12:25:09] 2025-04-18 10:24:55,754 | INFO     | --------------------------------------------------
[2025-04-18 12:25:09] 2025-04-18 10:24:55,754 | INFO     | PanDA job id: 6602370714
[2025-04-18 12:25:09] 2025-04-18 10:24:55,754 | INFO     | task id: 43427932
[2025-04-18 12:25:09] 2025-04-18 10:24:55,754 | INFO     | errors: (none)
[2025-04-18 12:25:09] 2025-04-18 10:24:55,754 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-18 12:25:09] 2025-04-18 10:24:55,754 | INFO     | pilot state: finished 
[2025-04-18 12:25:09] 2025-04-18 10:24:55,755 | INFO     | transexitcode: 0
[2025-04-18 12:25:09] 2025-04-18 10:24:55,755 | INFO     | exeerrorcode: 0
[2025-04-18 12:25:09] 2025-04-18 10:24:55,755 | INFO     | exeerrordiag: 
[2025-04-18 12:25:09] 2025-04-18 10:24:55,755 | INFO     | exitcode: 0
[2025-04-18 12:25:09] 2025-04-18 10:24:55,755 | INFO     | exitmsg: OK
[2025-04-18 12:25:09] 2025-04-18 10:24:55,755 | INFO     | cpuconsumptiontime: 352942 s
[2025-04-18 12:25:09] 2025-04-18 10:24:55,755 | INFO     | nevents: 1000
[2025-04-18 12:25:09] 2025-04-18 10:24:55,755 | INFO     | neventsw: 0
[2025-04-18 12:25:09] 2025-04-18 10:24:55,755 | INFO     | pid: 1943788
[2025-04-18 12:25:09] 2025-04-18 10:24:55,755 | INFO     | pgrp: 1943788
[2025-04-18 12:25:09] 2025-04-18 10:24:55,755 | INFO     | corecount: 4
[2025-04-18 12:25:09] 2025-04-18 10:24:55,755 | INFO     | event service: False
[2025-04-18 12:25:09] 2025-04-18 10:24:55,755 | INFO     | sizes: {0: 2427061, 1: 2427260, 5: 2427466, 11: 2427522, 90464: 2511412, 90466: 2520371, 90467: 2520555, 90473: 2520777}
[2025-04-18 12:25:09] 2025-04-18 10:24:55,756 | INFO     | --------------------------------------------------
[2025-04-18 12:25:09] 2025-04-18 10:24:55,756 | INFO     | 
[2025-04-18 12:25:09] 2025-04-18 10:24:55,756 | INFO     | executing command: ls -lF /scratch/boinc/var/slot24/slots/0
[2025-04-18 12:25:09] 2025-04-18 10:24:55,775 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-18 12:25:09] 2025-04-18 10:24:55,775 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-18 12:25:09] 2025-04-18 10:24:55,775 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-18 12:25:09] 2025-04-18 10:24:55,775 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-18 12:25:09] 2025-04-18 10:24:55,775 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-18 12:25:09] 2025-04-18 10:24:55,775 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-18 12:25:09] 2025-04-18 10:24:55,775 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-18 12:25:09] 2025-04-18 10:24:55,776 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-18 12:25:09] 2025-04-18 10:24:55,776 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-18 12:25:09] 2025-04-18 10:24:55,776 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-18 12:25:09] 2025-04-18 10:24:55,776 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-18 12:25:09] 2025-04-18 10:24:55,776 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-18 12:25:09] 2025-04-18 10:24:55,776 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-18 12:25:09] 2025-04-18 10:24:55,776 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-18 12:25:09] 2025-04-18 10:24:55,776 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-18 12:25:09] 2025-04-18 10:24:55,776 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-18 12:25:09] 2025-04-18 10:24:55,776 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-18 12:25:09] 2025-04-18 10:24:55,776 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-18 12:25:09] 2025-04-18 10:24:55,776 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-18 12:25:09] 2025-04-18 10:24:55,777 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-18 12:25:09] 2025-04-18 10:24:55,777 | INFO     | job 6602370714 has completed (purged errors)
[2025-04-18 12:25:09] 2025-04-18 10:24:55,777 | INFO     | overall cleanup function is called
[2025-04-18 12:25:09] 2025-04-18 10:24:56,790 | INFO     | --- collectZombieJob: --- 10, [1943788]
[2025-04-18 12:25:09] 2025-04-18 10:24:56,790 | INFO     | zombie collector waiting for pid 1943788
[2025-04-18 12:25:09] 2025-04-18 10:24:56,790 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-18 12:25:09] 2025-04-18 10:24:56,791 | INFO     | collected zombie processes
[2025-04-18 12:25:09] 2025-04-18 10:24:56,791 | INFO     | will attempt to kill all subprocesses of pid=1943788
[2025-04-18 12:25:09] 2025-04-18 10:24:57,072 | INFO     | process IDs to be killed: [1943788] (in reverse order)
[2025-04-18 12:25:09] 2025-04-18 10:24:57,165 | WARNING  | found no corresponding commands to process id(s)
[2025-04-18 12:25:09] 2025-04-18 10:24:57,165 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-18 12:25:09] 2025-04-18 10:24:57,174 | INFO     | did not find any defunct processes belonging to 1943788
[2025-04-18 12:25:09] 2025-04-18 10:24:57,181 | INFO     | did not find any defunct processes belonging to 1943788
[2025-04-18 12:25:09] 2025-04-18 10:24:57,181 | INFO     | ready for new job
[2025-04-18 12:25:09] 2025-04-18 10:24:57,182 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-18 12:25:09] 2025-04-18 10:24:57,186 | INFO     | **************************************
[2025-04-18 12:25:09] 2025-04-18 10:24:57,186 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-18 12:25:09] 2025-04-18 10:24:57,187 | INFO     | **************************************
[2025-04-18 12:25:09] 2025-04-18 10:24:57,187 | INFO     | 
[2025-04-18 12:25:09] 2025-04-18 10:24:57,190 | INFO     | architecture information:
[2025-04-18 12:25:09] 2025-04-18 10:24:57,191 | INFO     | executing command: cat /etc/os-release
[2025-04-18 12:25:09] 2025-04-18 10:24:57,205 | INFO     | cat /etc/os-release:
[2025-04-18 12:25:09] NAME="CentOS Linux"
[2025-04-18 12:25:09] VERSION="7 (Core)"
[2025-04-18 12:25:09] ID="centos"
[2025-04-18 12:25:09] ID_LIKE="rhel fedora"
[2025-04-18 12:25:09] VERSION_ID="7"
[2025-04-18 12:25:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-18 12:25:09] ANSI_COLOR="0;31"
[2025-04-18 12:25:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-18 12:25:09] HOME_URL="https://www.centos.org/"
[2025-04-18 12:25:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-18 12:25:09] 
[2025-04-18 12:25:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-18 12:25:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-18 12:25:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-18 12:25:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-18 12:25:09] 
[2025-04-18 12:25:09] 2025-04-18 10:24:57,205 | INFO     | **************************************
[2025-04-18 12:25:09] 2025-04-18 10:24:57,708 | INFO     | executing command: df -mP /scratch/boinc/var/slot24/slots/0
[2025-04-18 12:25:09] 2025-04-18 10:24:57,724 | INFO     | sufficient remaining disk space (690911969280 B)
[2025-04-18 12:25:09] 2025-04-18 10:24:57,724 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-18 12:25:09] 2025-04-18 10:24:57,725 | INFO     | current server update state: UPDATING_FINAL
[2025-04-18 12:25:09] 2025-04-18 10:24:57,725 | INFO     | update_server=False
[2025-04-18 12:25:09] 2025-04-18 10:24:57,725 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-18 12:25:09] 2025-04-18 10:24:57,725 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-18 12:25:09] 2025-04-18 10:24:57,998 | INFO     | all payload control threads have been joined
[2025-04-18 12:25:09] 2025-04-18 10:24:58,066 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-18 12:25:09] 2025-04-18 10:24:58,066 | INFO     | aborting loop
[2025-04-18 12:25:09] 2025-04-18 10:24:58,142 | INFO     | all job control threads have been joined
[2025-04-18 12:25:09] 2025-04-18 10:24:58,224 | INFO     | all data control threads have been joined
[2025-04-18 12:25:09] 2025-04-18 10:24:58,304 | INFO     | found 0 job(s) in 20 queues
[2025-04-18 12:25:09] 2025-04-18 10:24:58,304 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-18 12:25:09] 2025-04-18 10:24:58,304 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-18 12:25:09] 2025-04-18 10:24:58,730 | INFO     | [job] retrieve thread has finished
[2025-04-18 12:25:09] 2025-04-18 10:24:58,752 | INFO     | [job] create_data_payload thread has finished
[2025-04-18 12:25:09] 2025-04-18 10:24:58,853 | INFO     | [payload] failed_post thread has finished
[2025-04-18 12:25:09] 2025-04-18 10:24:59,003 | INFO     | [payload] validate_post thread has finished
[2025-04-18 12:25:09] 2025-04-18 10:24:59,004 | INFO     | [payload] control thread has finished
[2025-04-18 12:25:09] 2025-04-18 10:24:59,045 | INFO     | [job] validate thread has finished
[2025-04-18 12:25:09] 2025-04-18 10:24:59,072 | INFO     | [job] job monitor thread has finished
[2025-04-18 12:25:09] 2025-04-18 10:24:59,072 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-18 12:25:09] 2025-04-18 10:24:59,147 | INFO     | [job] control thread has finished
[2025-04-18 12:25:09] 2025-04-18 10:24:59,229 | INFO     | [data] control thread has finished
[2025-04-18 12:25:09] 2025-04-18 10:24:59,570 | INFO     | [payload] execute_payloads thread has finished
[2025-04-18 12:25:09] 2025-04-18 10:24:59,580 | INFO     | [data] copytool_in thread has finished
[2025-04-18 12:25:09] 2025-04-18 10:24:59,592 | INFO     | [payload] validate_pre thread has finished
[2025-04-18 12:25:09] 2025-04-18 10:24:59,731 | INFO     | [data] copytool_out thread has finished
[2025-04-18 12:25:09] 2025-04-18 10:24:59,888 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-18 12:25:09] 2025-04-18 10:25:00,568 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-18 12:25:09] 2025-04-18 10:25:01,574 | INFO     | [job] queue monitor thread has finished
[2025-04-18 12:25:09] 2025-04-18 10:25:03,893 | INFO     | [data] queue_monitor thread has finished
[2025-04-18 12:25:09] 2025-04-18 10:25:04,555 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22420361529152)>', '<ExcThread(monitor, started 22420054320896)>']
[2025-04-18 12:25:09] 2025-04-18 10:25:05,339 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-18 12:25:09] 2025-04-18 10:25:05,339 | INFO     | [monitor] control thread has ended
[2025-04-18 12:25:09] 2025-04-18 10:25:09,581 | INFO     | all workflow threads have been joined
[2025-04-18 12:25:09] 2025-04-18 10:25:09,581 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-18 12:25:09] 2025-04-18 10:25:09,581 | INFO     | traces error code: 0
[2025-04-18 12:25:09] 2025-04-18 10:25:09,582 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-18 12:25:09] 2025-04-18 10:25:09,708 [wrapper] ==== pilot stdout END ====
[2025-04-18 12:25:09] 2025-04-18 10:25:09,711 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-18 12:25:09] 2025-04-18 10:25:09,713 [wrapper] pilotpid: 1933857
[2025-04-18 12:25:09] 2025-04-18 10:25:09,716 [wrapper] Pilot exit status: 0
[2025-04-18 12:25:09] 2025-04-18 10:25:09,725 [wrapper] pandaids: 6602370714
[2025-04-18 12:25:09] 2025-04-18 10:25:09,780 [wrapper] cleanup supervisor_pilot 1669727 1933858
[2025-04-18 12:25:09] 2025-04-18 10:25:09,783 [wrapper] Test setup, not cleaning
[2025-04-18 12:25:09] 2025-04-18 10:25:09,785 [wrapper] apfmon messages muted
[2025-04-18 12:25:09] 2025-04-18 10:25:09,787 [wrapper] ==== wrapper stdout END ====
[2025-04-18 12:25:09] 2025-04-18 10:25:09,790 [wrapper] ==== wrapper stderr END ====
[2025-04-18 12:25:09]  *** Error codes and diagnostics ***
[2025-04-18 12:25:09]     "exeErrorCode": 0,
[2025-04-18 12:25:09]     "exeErrorDiag": "",
[2025-04-18 12:25:09]     "pilotErrorCode": 0,
[2025-04-18 12:25:09]     "pilotErrorDiag": "",
[2025-04-18 12:25:09]  *** Listing of results directory ***
[2025-04-18 12:25:09] total 951628
[2025-04-18 12:25:09] -rw-r--r-- 1 boinc boinc    495897 Apr 14 20:51 pilot3.tar.gz
[2025-04-18 12:25:09] -rw-r--r-- 1 boinc boinc      5111 Apr 14 20:52 queuedata.json
[2025-04-18 12:25:09] -rwx------ 1 boinc boinc     37140 Apr 14 20:53 runpilot2-wrapper.sh
[2025-04-18 12:25:09] -rw-r--r-- 1 boinc boinc       100 Apr 17 11:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-18 12:25:09] -rwxr-xr-x 1 boinc boinc      7986 Apr 17 11:16 run_atlas
[2025-04-18 12:25:09] -rw-r--r-- 1 boinc boinc       105 Apr 17 11:16 job.xml
[2025-04-18 12:25:09] -rw-r--r-- 1 boinc boinc      6634 Apr 17 11:16 init_data.xml
[2025-04-18 12:25:09] -rw-r--r-- 2 boinc boinc 321519701 Apr 17 11:16 EVNT.43427925._000003.pool.root.1
[2025-04-18 12:25:09] -rw-r--r-- 2 boinc boinc     17569 Apr 17 11:16 start_atlas.sh
[2025-04-18 12:25:09] drwxrwx--x 2 boinc boinc      4096 Apr 17 11:16 shared
[2025-04-18 12:25:09] -rw-r--r-- 2 boinc boinc    509058 Apr 17 11:16 input.tar.gz
[2025-04-18 12:25:09] -rw-r--r-- 1 boinc boinc         0 Apr 17 11:16 boinc_lockfile
[2025-04-18 12:25:09] -rw-r--r-- 1 boinc boinc      2809 Apr 17 11:16 pandaJob.out
[2025-04-18 12:25:09] -rw------- 1 boinc boinc       424 Apr 17 11:16 setup.sh.local
[2025-04-18 12:25:09] -rw------- 1 boinc boinc    990239 Apr 17 11:16 agis_schedconf.cvmfs.json
[2025-04-18 12:25:09] drwx------ 4 boinc boinc      4096 Apr 17 11:16 pilot3
[2025-04-18 12:25:09] -rw-r--r-- 1 boinc boinc       532 Apr 18 12:13 boinc_task_state.xml
[2025-04-18 12:25:09] -rw------- 1 boinc boinc 629022003 Apr 18 12:24 HITS.43427932._000025.pool.root.1
[2025-04-18 12:25:09] -rw------- 1 boinc boinc        95 Apr 18 12:24 pilot_heartbeat.json
[2025-04-18 12:25:09] -rw------- 1 boinc boinc      1043 Apr 18 12:24 memory_monitor_summary.json
[2025-04-18 12:25:09] -rw------- 1 boinc boinc   1618536 Apr 18 12:24 agis_ddmendpoints.agis.ALL.json
[2025-04-18 12:25:09] -rw------- 1 boinc boinc   1728865 Apr 18 12:24 log.43427932._000025.job.log.tgz.1
[2025-04-18 12:25:09] -rw------- 1 boinc boinc     27120 Apr 18 12:24 heartbeat.json
[2025-04-18 12:25:09] -rw-r--r-- 1 boinc boinc        29 Apr 18 12:25 wrapper_checkpoint.txt
[2025-04-18 12:25:09] -rw------- 1 boinc boinc      4363 Apr 18 12:25 pilotlog.txt
[2025-04-18 12:25:09] -rw-r--r-- 1 boinc boinc      8192 Apr 18 12:25 boinc_mmap_file
[2025-04-18 12:25:09] -rw------- 1 boinc boinc   8279900 Apr 18 12:25 log.43427932._000025.job.log.1
[2025-04-18 12:25:09] -rw------- 1 boinc boinc       353 Apr 18 12:25 output.list
[2025-04-18 12:25:09] -rw-r--r-- 1 boinc boinc       620 Apr 18 12:25 runtime_log
[2025-04-18 12:25:09] -rw------- 1 boinc boinc  10045440 Apr 18 12:25 result.tar.gz
[2025-04-18 12:25:09] -rw-r--r-- 1 boinc boinc     11424 Apr 18 12:25 runtime_log.err
[2025-04-18 12:25:09] -rw------- 1 boinc boinc       669 Apr 18 12:25 oMkLDm16dO7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmUjWLDmPQ1bjm.diag
[2025-04-18 12:25:09] -rw-r--r-- 1 boinc boinc     21261 Apr 18 12:25 stderr.txt
[2025-04-18 12:25:09] HITS file was successfully produced:
[2025-04-18 12:25:09] -rw------- 1 boinc boinc 629022003 Apr 18 12:24 shared/HITS.pool.root.1
[2025-04-18 12:25:09]  *** Contents of shared directory: ***
[2025-04-18 12:25:09] total 938608
[2025-04-18 12:25:09] -rw-r--r-- 2 boinc boinc 321519701 Apr 17 11:16 ATLAS.root_0
[2025-04-18 12:25:09] -rw-r--r-- 2 boinc boinc     17569 Apr 17 11:16 start_atlas.sh
[2025-04-18 12:25:09] -rw-r--r-- 2 boinc boinc    509058 Apr 17 11:16 input.tar.gz
[2025-04-18 12:25:09] -rw------- 1 boinc boinc 629022003 Apr 18 12:24 HITS.pool.root.1
[2025-04-18 12:25:09] -rw------- 1 boinc boinc  10045440 Apr 18 12:25 result.tar.gz
12:25:10 (1930080): run_atlas exited; CPU time 355805.603626
12:25:10 (1930080): called boinc_finish(0)

</stderr_txt>
]]>

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