Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-17 19:29:24 (3344): Detected: vboxwrapper 26206
2025-04-17 19:29:24 (3344): Detected: BOINC client v8.0.2
2025-04-17 19:29:27 (3344): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-04-17 19:29:27 (3344): Successfully copied 'init_data.xml' to the shared directory.
2025-04-17 19:29:28 (3344): Create VM. (boinc_caa98caaede66bdc, slot#2)
2025-04-17 19:29:28 (3344): Setting Memory Size for VM. (4600MB)
2025-04-17 19:29:29 (3344): Setting CPU Count for VM. (6)
2025-04-17 19:29:29 (3344): Setting Chipset Options for VM.
2025-04-17 19:29:29 (3344): Setting Graphics Controller Options for VM.
2025-04-17 19:29:30 (3344): Setting Boot Options for VM.
2025-04-17 19:29:30 (3344): Setting Network Configuration for NAT.
2025-04-17 19:29:30 (3344): Enabling VM Network Access.
2025-04-17 19:29:31 (3344): Disabling USB Support for VM.
2025-04-17 19:29:31 (3344): Disabling COM Port Support for VM.
2025-04-17 19:29:31 (3344): Disabling LPT Port Support for VM.
2025-04-17 19:29:31 (3344): Disabling Audio Support for VM.
2025-04-17 19:29:32 (3344): Disabling Clipboard Support for VM.
2025-04-17 19:29:32 (3344): Disabling Drag and Drop Support for VM.
2025-04-17 19:29:32 (3344): Adding storage controller(s) to VM.
2025-04-17 19:29:32 (3344): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-17 19:29:35 (3344): Adding VirtualBox Guest Additions to VM.
2025-04-17 19:29:36 (3344): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-17 19:29:36 (3344): forwarding host port 51363 to guest port 80
2025-04-17 19:29:36 (3344): Enabling remote desktop for VM.
2025-04-17 19:29:36 (3344): Required extension pack not installed, remote desktop not enabled.
2025-04-17 19:29:36 (3344): Enabling shared directory for VM.
2025-04-17 19:29:37 (3344): Starting VM using VBoxManage interface. (boinc_caa98caaede66bdc, slot#2)
2025-04-17 19:29:48 (3344): Successfully started VM. (PID = '3508')
2025-04-17 19:29:48 (3344): Reporting VM Process ID to BOINC.
2025-04-17 19:29:48 (3344): Guest Log: BIOS: VirtualBox 7.0.6
2025-04-17 19:29:48 (3344): Guest Log: CPUID EDX: 0x178bfbff
2025-04-17 19:29:48 (3344): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-17 19:29:48 (3344): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-17 19:29:48 (3344): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-17 19:29:48 (3344): Detected: Web Application Enabled (http://localhost:51363)
2025-04-17 19:29:48 (3344): Preference change detected
2025-04-17 19:29:48 (3344): Setting CPU throttle for VM. (80%)
2025-04-17 19:29:48 (3344): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-17 19:29:50 (3344): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-17 19:29:50 (3344): Guest Log: BIOS: Booting from Hard Disk...
2025-04-17 19:29:54 (3344): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-17 19:29:54 (3344): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-17 19:29:54 (3344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-17 19:29:54 (3344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-17 19:29:54 (3344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-17 19:29:54 (3344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-17 19:29:54 (3344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-17 19:29:54 (3344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-17 19:29:54 (3344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-17 19:29:54 (3344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-17 19:29:54 (3344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-17 19:29:54 (3344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-17 19:29:54 (3344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-17 19:29:54 (3344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-17 19:29:54 (3344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-17 19:29:54 (3344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-17 19:29:54 (3344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-17 19:29:54 (3344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-17 19:29:54 (3344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-17 19:29:54 (3344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-17 19:29:54 (3344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-17 19:29:54 (3344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-17 19:29:54 (3344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-17 19:29:54 (3344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-17 19:29:54 (3344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-17 19:29:54 (3344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-17 19:29:54 (3344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-17 19:29:54 (3344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-17 19:29:54 (3344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-17 19:29:54 (3344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-17 19:29:54 (3344): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-17 19:29:54 (3344): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-17 19:30:04 (3344): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-17 19:30:04 (3344): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-17 19:30:21 (3344): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-17 19:30:21 (3344): Guest Log: 00:00:00.000186 main     Log opened 2025-04-17T19:30:18.233083000Z
2025-04-17 19:30:21 (3344): Guest Log: 00:00:00.000406 main     OS Product: Linux
2025-04-17 19:30:21 (3344): Guest Log: 00:00:00.000448 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-17 19:30:21 (3344): Guest Log: 00:00:00.000494 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-17 19:30:21 (3344): Guest Log: 00:00:00.000532 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-17 19:30:21 (3344): Guest Log: 00:00:00.000534 main     Process ID: 1338
2025-04-17 19:30:21 (3344): Guest Log: 00:00:00.000535 main     Package type: LINUX_64BITS_GENERIC
2025-04-17 19:30:21 (3344): Guest Log: 00:00:00.001932 main     5.2.32 r132073 started. Verbose level = 0
2025-04-17 19:30:21 (3344): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-17 19:30:21 (3344): Guest Log: [INFO] Mounting shared directory
2025-04-17 19:30:21 (3344): Guest Log: [INFO] Checking for init_data.xml
2025-04-17 19:30:26 (3344): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-17 19:30:26 (3344): Guest Log: [INFO] Detected branch: prod
2025-04-17 19:30:27 (3344): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-17 19:30:27 (3344): Guest Log: Copying input files
2025-04-17 19:30:29 (3344): Guest Log: Copied input files into RunAtlas.
2025-04-17 19:30:29 (3344): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-17 19:30:29 (3344): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-17 19:30:29 (3344): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-17 19:30:29 (3344): Guest Log: Further information can be found at the LHC@home message board.
2025-04-17 19:30:31 (3344): Guest Log: 00:00:10.004055 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 865 715 000ns (GuestNow=1 744 936 230 102 311 000 ns GuestLast=1 744 918 218 236 596 000 ns fSetTimeLastLoop=true )
2025-04-17 19:30:40 (3344): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-17 19:30:41 (3344): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-17 19:30:41 (3344): Guest Log: 2.6.3.0 1619 0 30120 144983 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-04-17 19:30:44 (3344): Guest Log: copied the webapp to /var/www
2025-04-17 19:30:44 (3344): Guest Log: ATHENA_PROC_NUMBER=6
2025-04-17 19:30:44 (3344): Guest Log: ATHENA_CORE_NUMBER=6
2025-04-17 19:30:44 (3344): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-17 19:30:45 (3344): Guest Log:  *** Starting ATLAS job. (PandaID=6604383135 taskID=44075483) ***
2025-04-17 21:09:54 (3344): Status Report: Elapsed Time: '6000.000000'
2025-04-17 21:09:54 (3344): Status Report: CPU Time: '24911.468750'
2025-04-17 21:29:30 (3344): VM state change detected. (old = 'running', new = 'paused')
2025-04-17 23:50:27 (3344): VM state change detected. (old = 'paused', new = 'running')
2025-04-17 23:50:29 (3344): Guest Log: 01:59:13.158038 timesync vgsvcTimeSyncWorker: Radical host time change: 8 465 742 000 000ns (HostNow=1 744 951 828 956 000 000 ns HostLast=1 744 943 363 214 000 000 ns)
2025-04-17 23:50:39 (3344): Guest Log: 01:59:23.164568 timesync vgsvcTimeSyncWorker: Radical guest time change: 8 465 787 585 000ns (GuestNow=1 744 951 839 003 027 000 ns GuestLast=1 744 943 373 215 442 000 ns fSetTimeLastLoop=true )
2025-04-18 01:11:00 (3344): Status Report: Elapsed Time: '12000.000000'
2025-04-18 01:11:00 (3344): Status Report: CPU Time: '57290.500000'
2025-04-18 01:50:38 (3344): VM state change detected. (old = 'running', new = 'paused')
2025-04-18 02:56:14 (3344): VM state change detected. (old = 'paused', new = 'running')
2025-04-18 02:56:17 (3344): Guest Log: 03:59:25.812792 timesync vgsvcTimeSyncWorker: Radical host time change: 3 946 144 000 000ns (HostNow=1 744 962 977 785 000 000 ns HostLast=1 744 959 031 641 000 000 ns)
2025-04-18 02:56:28 (3344): Guest Log: 03:59:35.814310 timesync vgsvcTimeSyncWorker: Radical guest time change: 3 946 136 162 000ns (GuestNow=1 744 962 987 786 748 000 ns GuestLast=1 744 959 041 650 586 000 ns fSetTimeLastLoop=true )
2025-04-18 03:56:58 (3344): Status Report: Elapsed Time: '18000.000000'
2025-04-18 03:56:58 (3344): Status Report: CPU Time: '89804.343750'
2025-04-18 04:19:59 (3344): Guest Log:  *** Job finished ***
2025-04-18 04:19:59 (3344): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-18 04:19:59 (3344): Guest Log: 2025-04-18 09:19:48,536 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-04-18 04:19:59 (3344): Guest Log: 2025-04-18 09:19:48,721 | INFO     | [data] copytool_out thread has finished
2025-04-18 04:19:59 (3344): Guest Log: 2025-04-18 09:19:52,544 | INFO     | [data] queue_monitor thread has finished
2025-04-18 04:19:59 (3344): Guest Log: 2025-04-18 09:19:53,113 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140125750204224)>', '<ExcThread(monitor, started 140125153507072)>']
2025-04-18 04:19:59 (3344): Guest Log: 2025-04-18 09:19:53,468 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-18 04:19:59 (3344): Guest Log: 2025-04-18 09:19:53,468 | INFO     | [monitor] control thread has ended
2025-04-18 04:19:59 (3344): Guest Log: 2025-04-18 09:19:58,119 | INFO     | all workflow threads have been joined
2025-04-18 04:19:59 (3344): Guest Log: 2025-04-18 09:19:58,120 | INFO     | end of generic workflow (traces error code: 0)
2025-04-18 04:19:59 (3344): Guest Log: 2025-04-18 09:19:58,120 | INFO     | traces error code: 0
2025-04-18 04:19:59 (3344): Guest Log: 2025-04-18 09:19:58,120 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-18 04:19:59 (3344): Guest Log: 2025-04-18 09:19:58,347 [wrapper] ==== pilot stdout END ====
2025-04-18 04:19:59 (3344): Guest Log: 2025-04-18 09:19:58,352 [wrapper] ==== wrapper stdout RESUME ====
2025-04-18 04:19:59 (3344): Guest Log: 2025-04-18 09:19:58,357 [wrapper] pilotpid: 5960
2025-04-18 04:19:59 (3344): Guest Log: 2025-04-18 09:19:58,362 [wrapper] Pilot exit status: 0
2025-04-18 04:19:59 (3344): Guest Log: 2025-04-18 09:19:58,451 [wrapper] pandaids: 6604383135
2025-04-18 04:19:59 (3344): Guest Log: 2025-04-18 09:19:58,489 [wrapper] cleanup supervisor_pilot 25387 5961
2025-04-18 04:19:59 (3344): Guest Log: 2025-04-18 09:19:58,494 [wrapper] Test setup, not cleaning
2025-04-18 04:19:59 (3344): Guest Log: 2025-04-18 09:19:58,498 [wrapper] apfmon messages muted
2025-04-18 04:19:59 (3344): Guest Log: 2025-04-18 09:19:58,504 [wrapper] ==== wrapper stdout END ====
2025-04-18 04:19:59 (3344): Guest Log: 2025-04-18 09:19:58,509 [wrapper] ==== wrapper stderr END ====
2025-04-18 04:19:59 (3344): Guest Log:  *** Error codes and diagnostics ***
2025-04-18 04:19:59 (3344): Guest Log:     "exeErrorCode": 0,
2025-04-18 04:19:59 (3344): Guest Log:     "exeErrorDiag": "",
2025-04-18 04:19:59 (3344): Guest Log:     "pilotErrorCode": 0,
2025-04-18 04:19:59 (3344): Guest Log:     "pilotErrorDiag": "",
2025-04-18 04:19:59 (3344): Guest Log:  *** Listing of results directory ***
2025-04-18 04:19:59 (3344): Guest Log: total 204868
2025-04-18 04:19:59 (3344): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 16 18:53 pilot3.tar.gz
2025-04-18 04:19:59 (3344): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 16 18:58 runpilot2-wrapper.sh
2025-04-18 04:19:59 (3344): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 16 18:58 queuedata.json
2025-04-18 04:19:59 (3344): Guest Log: -rwxr-xr-x. 1 atlas atlas      8986 Apr 18 00:30 init_data.xml
2025-04-18 04:19:59 (3344): Guest Log: -rwxr-xr-x. 1 atlas atlas    508885 Apr 18 00:30 input.tar.gz
2025-04-18 04:19:59 (3344): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 18 00:30 start_atlas.sh
2025-04-18 04:19:59 (3344): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 18 00:30 EVNT.44075481._001731.pool.root.1 -> /data/./ATLAS.root_0
2025-04-18 04:19:59 (3344): Guest Log: -rw-r--r--. 1 atlas atlas      2579 Apr 18 00:30 pandaJob.out
2025-04-18 04:19:59 (3344): Guest Log: -rw-------. 1 atlas atlas       424 Apr 18 00:30 setup.sh.local
2025-04-18 04:19:59 (3344): Guest Log: -rw-------. 1 atlas atlas    990258 Apr 18 00:32 agis_schedconf.cvmfs.json
2025-04-18 04:19:59 (3344): Guest Log: drwx------. 4 atlas atlas      4096 Apr 18 00:32 pilot3
2025-04-18 04:19:59 (3344): Guest Log: -rw-------. 1 atlas atlas 202219538 Apr 18 09:18 HITS.44075483._044246.pool.root.1
2025-04-18 04:19:59 (3344): Guest Log: -rw-------. 1 atlas atlas      1033 Apr 18 09:19 memory_monitor_summary.json
2025-04-18 04:19:59 (3344): Guest Log: -rw-------. 1 atlas atlas   1618536 Apr 18 09:19 agis_ddmendpoints.agis.ALL.json
2025-04-18 04:19:59 (3344): Guest Log: -rw-------. 1 atlas atlas    391857 Apr 18 09:19 log.44075483._044246.job.log.tgz.1
2025-04-18 04:19:59 (3344): Guest Log: -rw-------. 1 atlas atlas        97 Apr 18 09:19 pilot_heartbeat.json
2025-04-18 04:19:59 (3344): Guest Log: -rw-------. 1 atlas atlas      7731 Apr 18 09:19 heartbeat.json
2025-04-18 04:19:59 (3344): Guest Log: -rw-------. 1 atlas atlas      4536 Apr 18 09:19 pilotlog.txt
2025-04-18 04:19:59 (3344): Guest Log: -rw-------. 1 atlas atlas   1493036 Apr 18 09:19 log.44075483._044246.job.log.1
2025-04-18 04:19:59 (3344): Guest Log: -rw-------. 1 atlas atlas       357 Apr 18 09:19 output.list
2025-04-18 04:19:59 (3344): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 18 09:19 runtime_log
2025-04-18 04:19:59 (3344): Guest Log: -rw-------. 1 atlas atlas   1904640 Apr 18 09:19 result.tar.gz
2025-04-18 04:19:59 (3344): Guest Log: -rw-------. 1 atlas atlas       664 Apr 18 09:19 z7lKDmN9MP7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmbvaLDmDcrNVo.diag
2025-04-18 04:19:59 (3344): Guest Log: -rw-r--r--. 1 atlas atlas     10957 Apr 18 09:19 runtime_log.err
2025-04-18 04:19:59 (3344): Guest Log: Looking for outputfile HITS.44075483._044246.pool.root.1
2025-04-18 04:19:59 (3344): Guest Log: HITS file was successfully produced
2025-04-18 04:19:59 (3344): Guest Log: -rw-------. 1 atlas atlas 202219538 Apr 18 09:18 /home/atlas/RunAtlas/HITS.44075483._044246.pool.root.1
2025-04-18 04:20:00 (3344): Guest Log: Successfully finished the ATLAS job!
2025-04-18 04:20:00 (3344): Guest Log: Copying the results back to the shared directory!
2025-04-18 04:20:00 (3344): Guest Log:  *** Contents of shared directory: ***
2025-04-18 04:20:00 (3344): Guest Log: total 419456
2025-04-18 04:20:00 (3344): Guest Log: -rwxrwxrwx. 1 root root 224848237 Apr 18 00:29 ATLAS.root_0
2025-04-18 04:20:00 (3344): Guest Log: -rwxrwxrwx. 1 root root 202219538 Apr 18 09:20 HITS.pool.root.1
2025-04-18 04:20:00 (3344): Guest Log: -rwxrwxrwx. 1 root root      8986 Apr 18 00:29 init_data.xml
2025-04-18 04:20:00 (3344): Guest Log: -rwxrwxrwx. 1 root root    508885 Apr 17 01:43 input.tar.gz
2025-04-18 04:20:00 (3344): Guest Log: -rwxrwxrwx. 1 root root   1904640 Apr 18 09:20 result.tar.gz
2025-04-18 04:20:00 (3344): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 17 01:43 start_atlas.sh
2025-04-18 04:20:00 (3344): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-18 04:20:00 (3344): VM Completion File Detected.
2025-04-18 04:20:00 (3344): Powering off VM.
2025-04-18 04:20:01 (3344): Successfully stopped VM.
2025-04-18 04:20:01 (3344): Deregistering VM. (boinc_caa98caaede66bdc, slot#2)
2025-04-18 04:20:01 (3344): Removing network bandwidth throttle group from VM.
2025-04-18 04:20:02 (3344): Removing VM from VirtualBox.
04:20:07 (3344): called boinc_finish(0)

</stderr_txt>
]]>

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