Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:21:33 (16455): wrapper (7.7.26015): starting
18:21:33 (16455): wrapper: running run_atlas (--nthreads 12)
[2025-04-16 18:21:33] Arguments: --nthreads 12
[2025-04-16 18:21:33] Threads: 12
[2025-04-16 18:21:33] Checking for CVMFS
[2025-04-16 18:21:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-16 18:21:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-16 18:21:33] Running cvmfs_config stat atlas.cern.ch
[2025-04-16 18:21:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-16 18:21:34] 2.11.2.0 11312 213429 100160 144941 3 59 17357529 18432001 3623 130560 0 22392781 99.325 44631398 29220 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-16 18:21:34] CVMFS is ok
[2025-04-16 18:21:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-16 18:21:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-16 18:21:34] Further information can be found at the LHC@home message board.
[2025-04-16 18:21:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-16 18:21:34] Checking for apptainer binary...
[2025-04-16 18:21:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-16 18:21:34] Running /usr/bin/apptainer --version
[2025-04-16 18:21:37] apptainer version 1.3.2-1.el7
[2025-04-16 18:21:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-16 18:21:40] c-206-14.aglt2.org
[2025-04-16 18:21:40] apptainer works
[2025-04-16 18:21:40] Set ATHENA_PROC_NUMBER=12
[2025-04-16 18:21:40] Set ATHENA_CORE_NUMBER=12
[2025-04-16 18:21:40] Starting ATLAS job with PandaID=6604464132
[2025-04-16 18:21:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:30:59 (30166): wrapper (7.7.26015): starting
20:30:59 (30166): wrapper: running run_atlas (--nthreads 12)
[2025-04-16 20:30:59] Arguments: --nthreads 12
[2025-04-16 20:30:59] Threads: 12
[2025-04-16 20:30:59] This job has been restarted, cleaning up previous attempt
[2025-04-16 20:30:59] Checking for CVMFS
[2025-04-16 20:31:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-16 20:31:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-16 20:31:01] Running cvmfs_config stat atlas.cern.ch
[2025-04-16 20:31:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-16 20:31:01] 2.11.2.0 11312 213558 104688 144943 1 74 17488607 18432001 5009 130560 0 22505957 99.328 44672975 29228 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-16 20:31:01] CVMFS is ok
[2025-04-16 20:31:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-16 20:31:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-16 20:31:02] Further information can be found at the LHC@home message board.
[2025-04-16 20:31:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-16 20:31:02] Checking for apptainer binary...
[2025-04-16 20:31:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-16 20:31:02] Running /usr/bin/apptainer --version
[2025-04-16 20:31:04] apptainer version 1.3.2-1.el7
[2025-04-16 20:31:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-16 20:31:19] c-206-14.aglt2.org
[2025-04-16 20:31:19] apptainer works
[2025-04-16 20:31:19] Set ATHENA_PROC_NUMBER=12
[2025-04-16 20:31:19] Set ATHENA_CORE_NUMBER=12
[2025-04-16 20:31:20] Starting ATLAS job with PandaID=6604464132
[2025-04-16 20:31:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-17 05:10:34]  *** The last 200 lines of the pilot log: ***
[2025-04-17 05:10:34] 2025-04-17 09:10:20,090 | INFO     | sum of deviations: 731283628271.1274
[2025-04-17 05:10:34] 2025-04-17 09:10:20,091 | INFO     | mean x: 1744865455.406
[2025-04-17 05:10:34] 2025-04-17 09:10:20,091 | INFO     | mean y: 2563595.758
[2025-04-17 05:10:34] 2025-04-17 09:10:20,091 | INFO     | -- intersect: -32921319531.580925
[2025-04-17 05:10:34] 2025-04-17 09:10:20,091 | INFO     | intersect: -32921319531.580925
[2025-04-17 05:10:34] 2025-04-17 09:10:20,092 | INFO     | chi2: 9.41813328912129
[2025-04-17 05:10:34] 2025-04-17 09:10:20,092 | INFO     | current chi2=9.41813328912129 (change=8.112832928700872 %)
[2025-04-17 05:10:34] 2025-04-17 09:10:20,092 | INFO     | right removable region: 499
[2025-04-17 05:10:34] 2025-04-17 09:10:20,092 | INFO     | sum of square deviations: 38755527052.58191
[2025-04-17 05:10:34] 2025-04-17 09:10:20,097 | INFO     | sum of deviations: 525532607677.5159
[2025-04-17 05:10:34] 2025-04-17 09:10:20,097 | INFO     | mean x: 1744865760.406
[2025-04-17 05:10:34] 2025-04-17 09:10:20,097 | INFO     | mean y: 2582916.628
[2025-04-17 05:10:34] 2025-04-17 09:10:20,097 | INFO     | -- intersect: -23658141703.869377
[2025-04-17 05:10:34] 2025-04-17 09:10:20,098 | INFO     | intersect: -23658141703.869377
[2025-04-17 05:10:34] 2025-04-17 09:10:20,098 | INFO     | chi2: 5.912142997004204
[2025-04-17 05:10:34] 2025-04-17 09:10:20,098 | INFO     | current chi2=5.912142997004204 (change=42.318710657595545 %)
[2025-04-17 05:10:34] 2025-04-17 09:10:20,099 | INFO     | sum of square deviations: 37604198043.26456
[2025-04-17 05:10:34] 2025-04-17 09:10:20,103 | INFO     | sum of deviations: 397668556926.9947
[2025-04-17 05:10:34] 2025-04-17 09:10:20,103 | INFO     | mean x: 1744865912.9131312
[2025-04-17 05:10:34] 2025-04-17 09:10:20,104 | INFO     | mean y: 2599846.139393939
[2025-04-17 05:10:34] 2025-04-17 09:10:20,104 | INFO     | -- intersect: -18449550331.905727
[2025-04-17 05:10:34] 2025-04-17 09:10:20,104 | INFO     | intersect: -18449550331.905727
[2025-04-17 05:10:34] 2025-04-17 09:10:20,104 | INFO     | chi2: 3.8176631889694255
[2025-04-17 05:10:34] 2025-04-17 09:10:20,104 | INFO     | current chi2=3.8176631889694255 (change=35.42674473699455 %)
[2025-04-17 05:10:34] 2025-04-17 09:10:20,105 | INFO     | sum of square deviations: 36475862281.55314
[2025-04-17 05:10:34] 2025-04-17 09:10:20,109 | INFO     | sum of deviations: 291361637393.0288
[2025-04-17 05:10:34] 2025-04-17 09:10:20,110 | INFO     | mean x: 1744866065.4224489
[2025-04-17 05:10:34] 2025-04-17 09:10:20,110 | INFO     | mean y: 2614211.342857143
[2025-04-17 05:10:34] 2025-04-17 09:10:20,110 | INFO     | -- intersect: -13935014731.5683
[2025-04-17 05:10:34] 2025-04-17 09:10:20,110 | INFO     | intersect: -13935014731.5683
[2025-04-17 05:10:34] 2025-04-17 09:10:20,110 | INFO     | chi2: 2.4217826379916016
[2025-04-17 05:10:34] 2025-04-17 09:10:20,111 | INFO     | current chi2=2.4217826379916016 (change=36.563742841720945 %)
[2025-04-17 05:10:34] 2025-04-17 09:10:20,111 | INFO     | sum of square deviations: 35370377182.47414
[2025-04-17 05:10:34] 2025-04-17 09:10:20,115 | INFO     | sum of deviations: 193052479479.2785
[2025-04-17 05:10:34] 2025-04-17 09:10:20,116 | INFO     | mean x: 1744866217.927835
[2025-04-17 05:10:34] 2025-04-17 09:10:20,116 | INFO     | mean y: 2627771.7793814433
[2025-04-17 05:10:34] 2025-04-17 09:10:20,116 | INFO     | -- intersect: -9520899444.026157
[2025-04-17 05:10:34] 2025-04-17 09:10:20,116 | INFO     | intersect: -9520899444.026157
[2025-04-17 05:10:34] 2025-04-17 09:10:20,116 | INFO     | chi2: 1.2329841765907097
[2025-04-17 05:10:34] 2025-04-17 09:10:20,117 | INFO     | current chi2=1.2329841765907097 (change=49.087743992861775 %)
[2025-04-17 05:10:34] 2025-04-17 09:10:20,117 | INFO     | sum of square deviations: 34287480717.7312
[2025-04-17 05:10:34] 2025-04-17 09:10:20,121 | INFO     | sum of deviations: 148269794554.8252
[2025-04-17 05:10:34] 2025-04-17 09:10:20,122 | INFO     | mean x: 1744866370.43125
[2025-04-17 05:10:34] 2025-04-17 09:10:20,122 | INFO     | mean y: 2634075.025
[2025-04-17 05:10:34] 2025-04-17 09:10:20,122 | INFO     | -- intersect: -7542714047.786393
[2025-04-17 05:10:34] 2025-04-17 09:10:20,122 | INFO     | intersect: -7542714047.786393
[2025-04-17 05:10:34] 2025-04-17 09:10:20,122 | INFO     | chi2: 1.0144048730000401
[2025-04-17 05:10:34] 2025-04-17 09:10:20,123 | INFO     | current chi2=1.0144048730000401 (change=17.727664940117652 %)
[2025-04-17 05:10:34] 2025-04-17 09:10:20,123 | INFO     | left removable region: 50
[2025-04-17 05:10:34] 2025-04-17 09:10:20,123 | INFO     | sum of square deviations: 28063302920.49452
[2025-04-17 05:10:34] 2025-04-17 09:10:20,127 | INFO     | sum of deviations: 99871357197.2027
[2025-04-17 05:10:34] 2025-04-17 09:10:20,128 | INFO     | mean x: 1744866949.9420936
[2025-04-17 05:10:34] 2025-04-17 09:10:20,128 | INFO     | mean y: 2650845.5077951
[2025-04-17 05:10:34] 2025-04-17 09:10:20,128 | INFO     | -- intersect: -6206961434.021761
[2025-04-17 05:10:34] 2025-04-17 09:10:20,128 | INFO     | intersect: -6206961434.021761
[2025-04-17 05:10:34] 2025-04-17 09:10:20,129 | INFO     | chi2: 0.00769416636402695
[2025-04-17 05:10:34] 2025-04-17 09:10:20,129 | INFO     | -- intersect: -6206961434.021761
[2025-04-17 05:10:34] 2025-04-17 09:10:20,129 | INFO     | current memory leak: 3.56 B/s (using 449 data points, chi2=0.01)
[2025-04-17 05:10:34] 2025-04-17 09:10:20,130 | INFO     | ..............................
[2025-04-17 05:10:34] 2025-04-17 09:10:20,131 | INFO     | . Timing measurements:
[2025-04-17 05:10:34] 2025-04-17 09:10:20,131 | INFO     | . get job = 0 s
[2025-04-17 05:10:34] 2025-04-17 09:10:20,131 | INFO     | . initial setup = 8 s
[2025-04-17 05:10:34] 2025-04-17 09:10:20,131 | INFO     | . payload setup = 66 s
[2025-04-17 05:10:34] 2025-04-17 09:10:20,131 | INFO     | . stage-in = 0 s
[2025-04-17 05:10:34] 2025-04-17 09:10:20,131 | INFO     | . payload execution = 30854 s
[2025-04-17 05:10:34] 2025-04-17 09:10:20,132 | INFO     | . stage-out = 3 s
[2025-04-17 05:10:34] 2025-04-17 09:10:20,132 | INFO     | . log creation = 0 s
[2025-04-17 05:10:34] 2025-04-17 09:10:20,132 | INFO     | ..............................
[2025-04-17 05:10:34] 2025-04-17 09:10:20,276 | INFO     | 
[2025-04-17 05:10:34] 2025-04-17 09:10:20,290 | INFO     | job summary report
[2025-04-17 05:10:34] 2025-04-17 09:10:20,290 | INFO     | --------------------------------------------------
[2025-04-17 05:10:34] 2025-04-17 09:10:20,290 | INFO     | PanDA job id: 6604464132
[2025-04-17 05:10:34] 2025-04-17 09:10:20,290 | INFO     | task id: 44075483
[2025-04-17 05:10:34] 2025-04-17 09:10:20,291 | INFO     | errors: (none)
[2025-04-17 05:10:34] 2025-04-17 09:10:20,291 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-17 05:10:34] 2025-04-17 09:10:20,291 | INFO     | pilot state: finished 
[2025-04-17 05:10:34] 2025-04-17 09:10:20,291 | INFO     | transexitcode: 0
[2025-04-17 05:10:34] 2025-04-17 09:10:20,291 | INFO     | exeerrorcode: 0
[2025-04-17 05:10:34] 2025-04-17 09:10:20,291 | INFO     | exeerrordiag: 
[2025-04-17 05:10:34] 2025-04-17 09:10:20,292 | INFO     | exitcode: 0
[2025-04-17 05:10:34] 2025-04-17 09:10:20,292 | INFO     | exitmsg: OK
[2025-04-17 05:10:34] 2025-04-17 09:10:20,292 | INFO     | cpuconsumptiontime: 91387 s
[2025-04-17 05:10:34] 2025-04-17 09:10:20,292 | INFO     | nevents: 400
[2025-04-17 05:10:34] 2025-04-17 09:10:20,292 | INFO     | neventsw: 0
[2025-04-17 05:10:34] 2025-04-17 09:10:20,293 | INFO     | pid: 13165
[2025-04-17 05:10:34] 2025-04-17 09:10:20,293 | INFO     | pgrp: 13165
[2025-04-17 05:10:34] 2025-04-17 09:10:20,293 | INFO     | corecount: 12
[2025-04-17 05:10:34] 2025-04-17 09:10:20,293 | INFO     | event service: False
[2025-04-17 05:10:34] 2025-04-17 09:10:20,293 | INFO     | sizes: {0: 2416537, 1: 2417222, 3: 2417250, 5: 2417250, 6: 2417449, 17: 2417477, 27: 2417633, 39: 2417661, 49: 2417895, 50: 2417923, 30922: 2455708, 30926: 2474107
[2025-04-17 05:10:34] 2025-04-17 09:10:20,293 | INFO     | --------------------------------------------------
[2025-04-17 05:10:34] 2025-04-17 09:10:20,293 | INFO     | 
[2025-04-17 05:10:34] 2025-04-17 09:10:20,294 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-04-17 05:10:34] 2025-04-17 09:10:20,310 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-17 05:10:34] 2025-04-17 09:10:20,310 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-17 05:10:34] 2025-04-17 09:10:20,310 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-17 05:10:34] 2025-04-17 09:10:20,310 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-17 05:10:34] 2025-04-17 09:10:20,311 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-17 05:10:34] 2025-04-17 09:10:20,311 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-17 05:10:34] 2025-04-17 09:10:20,311 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-17 05:10:34] 2025-04-17 09:10:20,311 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-17 05:10:34] 2025-04-17 09:10:20,311 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-17 05:10:34] 2025-04-17 09:10:20,311 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-17 05:10:34] 2025-04-17 09:10:20,311 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-17 05:10:34] 2025-04-17 09:10:20,311 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-17 05:10:34] 2025-04-17 09:10:20,311 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-17 05:10:34] 2025-04-17 09:10:20,312 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-17 05:10:34] 2025-04-17 09:10:20,312 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-17 05:10:34] 2025-04-17 09:10:20,312 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-17 05:10:34] 2025-04-17 09:10:20,312 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-17 05:10:34] 2025-04-17 09:10:20,312 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-17 05:10:34] 2025-04-17 09:10:20,312 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-17 05:10:34] 2025-04-17 09:10:20,313 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-17 05:10:34] 2025-04-17 09:10:20,313 | INFO     | job 6604464132 has completed (purged errors)
[2025-04-17 05:10:34] 2025-04-17 09:10:20,313 | INFO     | overall cleanup function is called
[2025-04-17 05:10:34] 2025-04-17 09:10:21,320 | INFO     | --- collectZombieJob: --- 10, [13165]
[2025-04-17 05:10:34] 2025-04-17 09:10:21,321 | INFO     | zombie collector waiting for pid 13165
[2025-04-17 05:10:34] 2025-04-17 09:10:21,321 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-17 05:10:34] 2025-04-17 09:10:21,321 | INFO     | collected zombie processes
[2025-04-17 05:10:34] 2025-04-17 09:10:21,321 | INFO     | will attempt to kill all subprocesses of pid=13165
[2025-04-17 05:10:34] 2025-04-17 09:10:21,533 | INFO     | process IDs to be killed: [13165] (in reverse order)
[2025-04-17 05:10:34] 2025-04-17 09:10:21,579 | WARNING  | found no corresponding commands to process id(s)
[2025-04-17 05:10:34] 2025-04-17 09:10:21,579 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-17 05:10:34] 2025-04-17 09:10:21,584 | INFO     | did not find any defunct processes belonging to 13165
[2025-04-17 05:10:34] 2025-04-17 09:10:21,589 | INFO     | did not find any defunct processes belonging to 13165
[2025-04-17 05:10:34] 2025-04-17 09:10:21,590 | INFO     | ready for new job
[2025-04-17 05:10:34] 2025-04-17 09:10:21,590 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-17 05:10:34] 2025-04-17 09:10:21,592 | INFO     | **************************************
[2025-04-17 05:10:34] 2025-04-17 09:10:21,592 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-17 05:10:34] 2025-04-17 09:10:21,593 | INFO     | **************************************
[2025-04-17 05:10:34] 2025-04-17 09:10:21,593 | INFO     | 
[2025-04-17 05:10:34] 2025-04-17 09:10:21,594 | INFO     | architecture information:
[2025-04-17 05:10:34] 2025-04-17 09:10:21,595 | INFO     | executing command: cat /etc/os-release
[2025-04-17 05:10:34] 2025-04-17 09:10:21,607 | INFO     | cat /etc/os-release:
[2025-04-17 05:10:34] NAME="CentOS Linux"
[2025-04-17 05:10:34] VERSION="7 (Core)"
[2025-04-17 05:10:34] ID="centos"
[2025-04-17 05:10:34] ID_LIKE="rhel fedora"
[2025-04-17 05:10:34] VERSION_ID="7"
[2025-04-17 05:10:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-17 05:10:34] ANSI_COLOR="0;31"
[2025-04-17 05:10:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-17 05:10:34] HOME_URL="https://www.centos.org/"
[2025-04-17 05:10:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-17 05:10:34] 
[2025-04-17 05:10:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-17 05:10:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-17 05:10:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-17 05:10:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-17 05:10:34] 
[2025-04-17 05:10:34] 2025-04-17 09:10:21,607 | INFO     | **************************************
[2025-04-17 05:10:34] 2025-04-17 09:10:22,110 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-04-17 05:10:34] 2025-04-17 09:10:22,126 | INFO     | sufficient remaining disk space (29278339072 B)
[2025-04-17 05:10:34] 2025-04-17 09:10:22,127 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-17 05:10:34] 2025-04-17 09:10:22,127 | INFO     | current server update state: UPDATING_FINAL
[2025-04-17 05:10:34] 2025-04-17 09:10:22,127 | INFO     | update_server=False
[2025-04-17 05:10:34] 2025-04-17 09:10:22,127 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-17 05:10:34] 2025-04-17 09:10:22,128 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-17 05:10:34] 2025-04-17 09:10:22,372 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-17 05:10:34] 2025-04-17 09:10:22,388 | INFO     | found 0 job(s) in 20 queues
[2025-04-17 05:10:34] 2025-04-17 09:10:22,388 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-17 05:10:34] 2025-04-17 09:10:22,388 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-17 05:10:34] 2025-04-17 09:10:22,464 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-17 05:10:34] 2025-04-17 09:10:22,487 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-17 05:10:34] 2025-04-17 09:10:22,488 | INFO     | aborting loop
[2025-04-17 05:10:34] 2025-04-17 09:10:22,696 | INFO     | all job control threads have been joined
[2025-04-17 05:10:34] 2025-04-17 09:10:22,876 | INFO     | all data control threads have been joined
[2025-04-17 05:10:34] 2025-04-17 09:10:23,130 | INFO     | [job] queue monitor thread has finished
[2025-04-17 05:10:34] 2025-04-17 09:10:23,130 | INFO     | [job] retrieve thread has finished
[2025-04-17 05:10:34] 2025-04-17 09:10:23,347 | INFO     | [payload] failed_post thread has finished
[2025-04-17 05:10:34] 2025-04-17 09:10:23,377 | INFO     | [payload] validate_pre thread has finished
[2025-04-17 05:10:34] 2025-04-17 09:10:23,444 | INFO     | all payload control threads have been joined
[2025-04-17 05:10:34] 2025-04-17 09:10:23,493 | INFO     | [job] job monitor thread has finished
[2025-04-17 05:10:34] 2025-04-17 09:10:23,702 | INFO     | [job] control thread has finished
[2025-04-17 05:10:34] 2025-04-17 09:10:23,740 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-17 05:10:34] 2025-04-17 09:10:23,882 | INFO     | [data] control thread has finished
[2025-04-17 05:10:34] 2025-04-17 09:10:24,000 | INFO     | [payload] validate_post thread has finished
[2025-04-17 05:10:34] 2025-04-17 09:10:24,242 | INFO     | [payload] execute_payloads thread has finished
[2025-04-17 05:10:34] 2025-04-17 09:10:24,287 | INFO     | [data] copytool_in thread has finished
[2025-04-17 05:10:34] 2025-04-17 09:10:24,296 | INFO     | [job] validate thread has finished
[2025-04-17 05:10:34] 2025-04-17 09:10:24,296 | INFO     | [job] create_data_payload thread has finished
[2025-04-17 05:10:34] 2025-04-17 09:10:24,378 | INFO     | [data] copytool_out thread has finished
[2025-04-17 05:10:34] 2025-04-17 09:10:24,449 | INFO     | [payload] control thread has finished
[2025-04-17 05:10:34] 2025-04-17 09:10:26,471 | INFO     | [data] queue_monitor thread has finished
[2025-04-17 05:10:34] 2025-04-17 09:10:26,638 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140666422183744)>', '<ExcThread(monitor, started 140665983842048)>']
[2025-04-17 05:10:34] 2025-04-17 09:10:27,412 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-17 05:10:34] 2025-04-17 09:10:27,413 | INFO     | [monitor] control thread has ended
[2025-04-17 05:10:34] 2025-04-17 09:10:31,664 | INFO     | all workflow threads have been joined
[2025-04-17 05:10:34] 2025-04-17 09:10:31,664 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-17 05:10:34] 2025-04-17 09:10:31,680 | INFO     | traces error code: 0
[2025-04-17 05:10:34] 2025-04-17 09:10:31,685 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-17 05:10:34] 2025-04-17 09:10:32,755 [wrapper] ==== pilot stdout END ====
[2025-04-17 05:10:34] 2025-04-17 09:10:32,758 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-17 05:10:34] 2025-04-17 09:10:32,760 [wrapper] pilotpid: 3828
[2025-04-17 05:10:34] 2025-04-17 09:10:32,762 [wrapper] Pilot exit status: 0
[2025-04-17 05:10:34] 2025-04-17 09:10:32,825 [wrapper] pandaids: 6604464132 6604464132
[2025-04-17 05:10:34] 2025-04-17 09:10:32,890 [wrapper] cleanup supervisor_pilot 13568 3829
[2025-04-17 05:10:34] 2025-04-17 09:10:32,902 [wrapper] Test setup, not cleaning
[2025-04-17 05:10:34] 2025-04-17 09:10:32,905 [wrapper] apfmon messages muted
[2025-04-17 05:10:34] 2025-04-17 09:10:32,907 [wrapper] ==== wrapper stdout END ====
[2025-04-17 05:10:34] 2025-04-17 09:10:32,910 [wrapper] ==== wrapper stderr END ====
[2025-04-17 05:10:34]  *** Error codes and diagnostics ***
[2025-04-17 05:10:34]     "exeErrorCode": 0,
[2025-04-17 05:10:34]     "exeErrorDiag": "",
[2025-04-17 05:10:34]     "pilotErrorCode": 0,
[2025-04-17 05:10:34]     "pilotErrorDiag": "",
[2025-04-17 05:10:34]  *** Listing of results directory ***
[2025-04-17 05:10:34] total 643544
[2025-04-17 05:10:34] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-04-17 05:10:34] -rw-r--r-- 1 boincer umatlas    495897 Apr 16 15:07 pilot3.tar.gz
[2025-04-17 05:10:34] -rw-r--r-- 1 boincer umatlas      5111 Apr 16 15:09 queuedata.json
[2025-04-17 05:10:34] -rwx------ 1 boincer umatlas     37140 Apr 16 15:10 runpilot2-wrapper.sh
[2025-04-17 05:10:34] -rw-r--r-- 1 boincer umatlas       100 Apr 16 18:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-17 05:10:34] -rwxr-xr-x 1 boincer umatlas      7986 Apr 16 18:21 run_atlas
[2025-04-17 05:10:34] -rw-r--r-- 1 boincer umatlas       105 Apr 16 18:21 job.xml
[2025-04-17 05:10:34] -rw-r--r-- 3 boincer umatlas 226232783 Apr 16 18:21 EVNT.44075481._001748.pool.root.1
[2025-04-17 05:10:34] -rw-r--r-- 3 boincer umatlas 226232783 Apr 16 18:21 ATLAS.root_0
[2025-04-17 05:10:34] -rw-r--r-- 2 boincer umatlas     17569 Apr 16 18:21 start_atlas.sh
[2025-04-17 05:10:34] drwxrwx--x 2 boincer umatlas      4096 Apr 16 18:21 shared
[2025-04-17 05:10:34] -rw-r--r-- 2 boincer umatlas    508891 Apr 16 18:21 input.tar.gz
[2025-04-17 05:10:34] -rw-r--r-- 1 boincer umatlas         0 Apr 16 18:21 boinc_lockfile
[2025-04-17 05:10:34] -rw-r--r-- 1 boincer umatlas      2578 Apr 16 20:31 pandaJob.out
[2025-04-17 05:10:34] -rw------- 1 boincer umatlas       424 Apr 16 20:31 setup.sh.local
[2025-04-17 05:10:34] -rw------- 1 boincer umatlas    986560 Apr 16 20:33 agis_schedconf.cvmfs.json
[2025-04-17 05:10:34] -rw------- 1 boincer umatlas 196533273 Apr 17 05:08 HITS.44075483._044692.pool.root.1
[2025-04-17 05:10:34] -rw-r--r-- 1 boincer umatlas       532 Apr 17 05:09 boinc_task_state.xml
[2025-04-17 05:10:34] -rw------- 1 boincer umatlas        96 Apr 17 05:09 pilot_heartbeat.json
[2025-04-17 05:10:34] -rw------- 1 boincer umatlas      1069 Apr 17 05:10 memory_monitor_summary.json
[2025-04-17 05:10:34] -rw------- 1 boincer umatlas   1618536 Apr 17 05:10 agis_ddmendpoints.agis.ALL.json
[2025-04-17 05:10:34] -rw------- 1 boincer umatlas    589876 Apr 17 05:10 log.44075483._044692.job.log.tgz.1
[2025-04-17 05:10:34] -rw------- 1 boincer umatlas      7787 Apr 17 05:10 heartbeat.json
[2025-04-17 05:10:34] -rw-r--r-- 1 boincer umatlas      5868 Apr 17 05:10 init_data.xml
[2025-04-17 05:10:34] -rw-r--r-- 1 boincer umatlas      8192 Apr 17 05:10 boinc_mmap_file
[2025-04-17 05:10:34] -rw-r--r-- 1 boincer umatlas        29 Apr 17 05:10 wrapper_checkpoint.txt
[2025-04-17 05:10:34] -rw------- 1 boincer umatlas      4353 Apr 17 05:10 pilotlog.txt
[2025-04-17 05:10:34] -rw------- 1 boincer umatlas   2473996 Apr 17 05:10 log.44075483._044692.job.log.1
[2025-04-17 05:10:34] -rw------- 1 boincer umatlas       357 Apr 17 05:10 output.list
[2025-04-17 05:10:34] -rw-r--r-- 1 boincer umatlas       620 Apr 17 05:10 runtime_log
[2025-04-17 05:10:34] -rw------- 1 boincer umatlas   3082240 Apr 17 05:10 result.tar.gz
[2025-04-17 05:10:34] -rw-r--r-- 1 boincer umatlas     11101 Apr 17 05:10 runtime_log.err
[2025-04-17 05:10:34] -rw------- 1 boincer umatlas       788 Apr 17 05:10 CgeKDmEKNP7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmN0aLDm6wsJXo.diag
[2025-04-17 05:10:34] -rw-r--r-- 1 boincer umatlas     22966 Apr 17 05:10 stderr.txt
[2025-04-17 05:10:34] HITS file was successfully produced:
[2025-04-17 05:10:34] -rw------- 1 boincer umatlas 196533273 Apr 17 05:08 shared/HITS.pool.root.1
[2025-04-17 05:10:34]  *** Contents of shared directory: ***
[2025-04-17 05:10:34] total 416396
[2025-04-17 05:10:34] -rw-r--r-- 3 boincer umatlas 226232783 Apr 16 18:21 ATLAS.root_0
[2025-04-17 05:10:34] -rw-r--r-- 2 boincer umatlas     17569 Apr 16 18:21 start_atlas.sh
[2025-04-17 05:10:34] -rw-r--r-- 2 boincer umatlas    508891 Apr 16 18:21 input.tar.gz
[2025-04-17 05:10:34] -rw------- 1 boincer umatlas 196533273 Apr 17 05:08 HITS.pool.root.1
[2025-04-17 05:10:34] -rw------- 1 boincer umatlas   3082240 Apr 17 05:10 result.tar.gz
05:10:36 (30166): run_atlas exited; CPU time 91824.354881
05:10:36 (30166): called boinc_finish(0)

</stderr_txt>
]]>

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