Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-16 19:59:30 (27436): Detected: vboxwrapper 26206
2025-04-16 19:59:30 (27436): Detected: BOINC client v8.0.2
2025-04-16 19:59:31 (27436): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-04-16 19:59:31 (27436): Successfully copied 'init_data.xml' to the shared directory.
2025-04-16 19:59:32 (27436): Create VM. (boinc_505a7f142d76c9c8, slot#3)
2025-04-16 19:59:32 (27436): Setting Memory Size for VM. (4400MB)
2025-04-16 19:59:32 (27436): Setting CPU Count for VM. (4)
2025-04-16 19:59:33 (27436): Setting Chipset Options for VM.
2025-04-16 19:59:33 (27436): Setting Graphics Controller Options for VM.
2025-04-16 19:59:33 (27436): Setting Boot Options for VM.
2025-04-16 19:59:33 (27436): Setting Network Configuration for NAT.
2025-04-16 19:59:34 (27436): Enabling VM Network Access.
2025-04-16 19:59:34 (27436): Disabling USB Support for VM.
2025-04-16 19:59:34 (27436): Disabling COM Port Support for VM.
2025-04-16 19:59:35 (27436): Disabling LPT Port Support for VM.
2025-04-16 19:59:35 (27436): Disabling Audio Support for VM.
2025-04-16 19:59:35 (27436): Disabling Clipboard Support for VM.
2025-04-16 19:59:35 (27436): Disabling Drag and Drop Support for VM.
2025-04-16 19:59:36 (27436): Adding storage controller(s) to VM.
2025-04-16 19:59:36 (27436): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-16 19:59:39 (27436): Adding VirtualBox Guest Additions to VM.
2025-04-16 19:59:39 (27436): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-16 19:59:39 (27436): forwarding host port 57197 to guest port 80
2025-04-16 19:59:39 (27436): Enabling remote desktop for VM.
2025-04-16 19:59:40 (27436): Required extension pack not installed, remote desktop not enabled.
2025-04-16 19:59:40 (27436): Enabling shared directory for VM.
2025-04-16 19:59:40 (27436): Starting VM using VBoxManage interface. (boinc_505a7f142d76c9c8, slot#3)
2025-04-16 19:59:46 (27436): Successfully started VM. (PID = '8160')
2025-04-16 19:59:46 (27436): Reporting VM Process ID to BOINC.
2025-04-16 19:59:46 (27436): Guest Log: BIOS: VirtualBox 7.1.6
2025-04-16 19:59:46 (27436): Guest Log: CPUID EDX: 0x178bfbff
2025-04-16 19:59:46 (27436): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-16 19:59:46 (27436): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-16 19:59:46 (27436): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-16 19:59:46 (27436): Detected: Web Application Enabled (http://localhost:57197)
2025-04-16 19:59:46 (27436): Preference change detected
2025-04-16 19:59:46 (27436): Setting CPU throttle for VM. (50%)
2025-04-16 19:59:47 (27436): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-16 19:59:48 (27436): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-16 19:59:48 (27436): Guest Log: BIOS: Booting from Hard Disk...
2025-04-16 19:59:52 (27436): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-16 19:59:52 (27436): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-16 19:59:52 (27436): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-16 19:59:52 (27436): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-16 19:59:52 (27436): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-16 19:59:52 (27436): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-16 19:59:52 (27436): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-16 19:59:52 (27436): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-16 19:59:52 (27436): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-16 19:59:52 (27436): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-16 19:59:52 (27436): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-16 19:59:52 (27436): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-16 19:59:52 (27436): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-16 19:59:52 (27436): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-16 19:59:52 (27436): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-16 19:59:52 (27436): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-16 19:59:52 (27436): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-16 19:59:52 (27436): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-16 19:59:52 (27436): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-16 19:59:52 (27436): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-16 19:59:52 (27436): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-16 19:59:52 (27436): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-16 19:59:52 (27436): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-16 19:59:52 (27436): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-16 19:59:52 (27436): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-16 19:59:52 (27436): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-16 19:59:52 (27436): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-16 19:59:52 (27436): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-16 19:59:52 (27436): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-16 19:59:52 (27436): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-16 19:59:52 (27436): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-16 19:59:52 (27436): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-16 19:59:59 (27436): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-16 20:00:00 (27436): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-16 20:00:08 (27436): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-16 20:00:08 (27436): Guest Log: 00:00:00.000171 main     Log opened 2025-04-16T20:00:06.077462000Z
2025-04-16 20:00:08 (27436): Guest Log: 00:00:00.000269 main     OS Product: Linux
2025-04-16 20:00:08 (27436): Guest Log: 00:00:00.000311 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-16 20:00:08 (27436): Guest Log: 00:00:00.000386 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-16 20:00:08 (27436): Guest Log: 00:00:00.000427 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-16 20:00:08 (27436): Guest Log: 00:00:00.000428 main     Process ID: 1330
2025-04-16 20:00:08 (27436): Guest Log: 00:00:00.000429 main     Package type: LINUX_64BITS_GENERIC
2025-04-16 20:00:08 (27436): Guest Log: 00:00:00.001517 main     5.2.32 r132073 started. Verbose level = 0
2025-04-16 20:00:08 (27436): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-16 20:00:08 (27436): Guest Log: [INFO] Mounting shared directory
2025-04-16 20:00:08 (27436): Guest Log: [INFO] Checking for init_data.xml
2025-04-16 20:00:12 (27436): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-16 20:00:12 (27436): Guest Log: [INFO] Detected branch: prod
2025-04-16 20:00:12 (27436): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-16 20:00:12 (27436): Guest Log: Copying input files
2025-04-16 20:00:15 (27436): Guest Log: Copied input files into RunAtlas.
2025-04-16 20:00:15 (27436): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-16 20:00:15 (27436): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-16 20:00:15 (27436): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-16 20:00:15 (27436): Guest Log: Further information can be found at the LHC@home message board.
2025-04-16 20:00:18 (27436): Guest Log: 00:00:10.009144 timesync vgsvcTimeSyncWorker: Radical guest time change: 25 212 002 011 000ns (GuestNow=1 744 858 818 082 703 000 ns GuestLast=1 744 833 606 080 692 000 ns fSetTimeLastLoop=true )
2025-04-16 20:00:23 (27436): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-16 20:00:24 (27436): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-16 20:00:24 (27436): Guest Log: 2.6.3.0 1610 0 32060 144946 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-16 20:00:25 (27436): Guest Log: copied the webapp to /var/www
2025-04-16 20:00:25 (27436): Guest Log: ATHENA_PROC_NUMBER=4
2025-04-16 20:00:25 (27436): Guest Log: ATHENA_CORE_NUMBER=4
2025-04-16 20:00:25 (27436): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-16 20:00:25 (27436): Guest Log:  *** Starting ATLAS job. (PandaID=6604383158 taskID=44075483) ***
2025-04-16 20:39:47 (27436): VM state change detected. (old = 'running', new = 'paused')
2025-04-16 20:40:07 (27436): VM state change detected. (old = 'paused', new = 'running')
2025-04-16 21:40:11 (27436): Status Report: Elapsed Time: '6000.000000'
2025-04-16 21:40:11 (27436): Status Report: CPU Time: '10618.484375'
2025-04-16 21:41:41 (27436): VM state change detected. (old = 'running', new = 'paused')
2025-04-16 21:42:01 (27436): VM state change detected. (old = 'paused', new = 'running')
2025-04-16 22:43:36 (27436): VM state change detected. (old = 'running', new = 'paused')
2025-04-16 22:43:57 (27436): VM state change detected. (old = 'paused', new = 'running')
2025-04-16 23:20:59 (27436): Status Report: Elapsed Time: '12000.000000'
2025-04-16 23:20:59 (27436): Status Report: CPU Time: '25037.062500'
2025-04-16 23:45:30 (27436): VM state change detected. (old = 'running', new = 'paused')
2025-04-16 23:45:50 (27436): VM state change detected. (old = 'paused', new = 'running')
2025-04-17 00:47:24 (27436): VM state change detected. (old = 'running', new = 'paused')
2025-04-17 00:47:44 (27436): VM state change detected. (old = 'paused', new = 'running')
2025-04-17 01:01:44 (27436): Status Report: Elapsed Time: '18000.168671'
2025-04-17 01:01:44 (27436): Status Report: CPU Time: '39453.843750'
2025-04-17 01:55:20 (27436): Guest Log:  *** Job finished ***
2025-04-17 01:55:20 (27436): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-17 01:55:20 (27436): Guest Log: 2025-04-17 08:53:35,058 | INFO     | [payload] validate_pre thread has finished
2025-04-17 01:55:20 (27436): Guest Log: 2025-04-17 08:53:35,147 | INFO     | [payload] run_realtimelog thread has finished
2025-04-17 01:55:20 (27436): Guest Log: 2025-04-17 08:53:36,911 | INFO     | [data] queue_monitor thread has finished
2025-04-17 01:55:20 (27436): Guest Log: 2025-04-17 08:53:38,897 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140031278405440)>', '<ExcThread(monitor, started 140030580332288)>']
2025-04-17 01:55:20 (27436): Guest Log: 2025-04-17 08:53:38,915 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-17 01:55:20 (27436): Guest Log: 2025-04-17 08:53:38,915 | INFO     | [monitor] control thread has ended
2025-04-17 01:55:20 (27436): Guest Log: 2025-04-17 08:53:43,905 | INFO     | all workflow threads have been joined
2025-04-17 01:55:20 (27436): Guest Log: 2025-04-17 08:53:43,906 | INFO     | end of generic workflow (traces error code: 0)
2025-04-17 01:55:20 (27436): Guest Log: 2025-04-17 08:53:43,906 | INFO     | traces error code: 0
2025-04-17 01:55:20 (27436): Guest Log: 2025-04-17 08:53:43,906 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-17 01:55:20 (27436): Guest Log: 2025-04-17 08:53:43,979 [wrapper] ==== pilot stdout END ====
2025-04-17 01:55:20 (27436): Guest Log: 2025-04-17 08:53:44,021 [wrapper] ==== wrapper stdout RESUME ====
2025-04-17 01:55:20 (27436): Guest Log: 2025-04-17 08:53:44,036 [wrapper] pilotpid: 5943
2025-04-17 01:55:20 (27436): Guest Log: 2025-04-17 08:53:44,051 [wrapper] Pilot exit status: 0
2025-04-17 01:55:20 (27436): Guest Log: 2025-04-17 08:53:44,284 [wrapper] pandaids: 6604383158
2025-04-17 01:55:20 (27436): Guest Log: 2025-04-17 08:53:44,482 [wrapper] cleanup supervisor_pilot 20850 5944
2025-04-17 01:55:20 (27436): Guest Log: 2025-04-17 08:53:44,492 [wrapper] Test setup, not cleaning
2025-04-17 01:55:20 (27436): Guest Log: 2025-04-17 08:53:44,502 [wrapper] apfmon messages muted
2025-04-17 01:55:20 (27436): Guest Log: 2025-04-17 08:53:44,513 [wrapper] ==== wrapper stdout END ====
2025-04-17 01:55:20 (27436): Guest Log: 2025-04-17 08:53:44,526 [wrapper] ==== wrapper stderr END ====
2025-04-17 01:55:20 (27436): Guest Log:  *** Error codes and diagnostics ***
2025-04-17 01:55:20 (27436): Guest Log:     "exeErrorCode": 0,
2025-04-17 01:55:20 (27436): Guest Log:     "exeErrorDiag": "",
2025-04-17 01:55:20 (27436): Guest Log:     "pilotErrorCode": 0,
2025-04-17 01:55:20 (27436): Guest Log:     "pilotErrorDiag": "",
2025-04-17 01:55:20 (27436): Guest Log:  *** Listing of results directory ***
2025-04-17 01:55:20 (27436): Guest Log: total 196992
2025-04-17 01:55:20 (27436): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 16 18:53 pilot3.tar.gz
2025-04-17 01:55:20 (27436): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 16 19:00 queuedata.json
2025-04-17 01:55:20 (27436): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 16 19:01 runpilot2-wrapper.sh
2025-04-17 01:55:20 (27436): Guest Log: -rwxr-xr-x. 1 atlas atlas      9003 Apr 17 03:00 init_data.xml
2025-04-17 01:55:20 (27436): Guest Log: -rwxr-xr-x. 1 atlas atlas    508894 Apr 17 03:00 input.tar.gz
2025-04-17 01:55:20 (27436): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 17 03:00 start_atlas.sh
2025-04-17 01:55:20 (27436): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 17 03:00 EVNT.44075481._001732.pool.root.1 -> /data/./ATLAS.root_0
2025-04-17 01:55:20 (27436): Guest Log: -rw-r--r--. 1 atlas atlas      2579 Apr 17 03:00 pandaJob.out
2025-04-17 01:55:20 (27436): Guest Log: -rw-------. 1 atlas atlas       424 Apr 17 03:00 setup.sh.local
2025-04-17 01:55:20 (27436): Guest Log: -rw-------. 1 atlas atlas    986528 Apr 17 03:01 agis_schedconf.cvmfs.json
2025-04-17 01:55:20 (27436): Guest Log: drwx------. 4 atlas atlas      4096 Apr 17 03:01 pilot3
2025-04-17 01:55:20 (27436): Guest Log: -rw-------. 1 atlas atlas 194275811 Apr 17 08:52 HITS.44075483._044269.pool.root.1
2025-04-17 01:55:20 (27436): Guest Log: -rw-------. 1 atlas atlas        95 Apr 17 08:52 pilot_heartbeat.json
2025-04-17 01:55:20 (27436): Guest Log: -rw-------. 1 atlas atlas      1031 Apr 17 08:53 memory_monitor_summary.json
2025-04-17 01:55:20 (27436): Guest Log: -rw-------. 1 atlas atlas   1618536 Apr 17 08:53 agis_ddmendpoints.agis.ALL.json
2025-04-17 01:55:20 (27436): Guest Log: -rw-------. 1 atlas atlas    354467 Apr 17 08:53 log.44075483._044269.job.log.tgz.1
2025-04-17 01:55:20 (27436): Guest Log: -rw-------. 1 atlas atlas      7693 Apr 17 08:53 heartbeat.json
2025-04-17 01:55:20 (27436): Guest Log: -rw-------. 1 atlas atlas      4536 Apr 17 08:53 pilotlog.txt
2025-04-17 01:55:20 (27436): Guest Log: -rw-------. 1 atlas atlas   1472000 Apr 17 08:53 log.44075483._044269.job.log.1
2025-04-17 01:55:20 (27436): Guest Log: -rw-------. 1 atlas atlas       357 Apr 17 08:53 output.list
2025-04-17 01:55:20 (27436): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 17 08:53 runtime_log
2025-04-17 01:55:20 (27436): Guest Log: -rw-------. 1 atlas atlas   1843200 Apr 17 08:53 result.tar.gz
2025-04-17 01:55:20 (27436): Guest Log: -rw-r--r--. 1 atlas atlas     10947 Apr 17 08:53 runtime_log.err
2025-04-17 01:55:20 (27436): Guest Log: -rw-------. 1 atlas atlas       663 Apr 17 08:53 7XRMDmOCNP7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmxx2KDmxx8OXo.diag
2025-04-17 01:55:20 (27436): Guest Log: Looking for outputfile HITS.44075483._044269.pool.root.1
2025-04-17 01:55:20 (27436): Guest Log: HITS file was successfully produced
2025-04-17 01:55:20 (27436): Guest Log: -rw-------. 1 atlas atlas 194275811 Apr 17 08:52 /home/atlas/RunAtlas/HITS.44075483._044269.pool.root.1
2025-04-17 01:55:23 (27436): Guest Log: Successfully finished the ATLAS job!
2025-04-17 01:55:23 (27436): Guest Log: Copying the results back to the shared directory!
2025-04-17 01:55:23 (27436): Guest Log:  *** Contents of shared directory: ***
2025-04-17 01:55:23 (27436): Guest Log: total 409124
2025-04-17 01:55:23 (27436): Guest Log: -rwxrwxrwx. 1 root root 222277559 Apr 17 02:59 ATLAS.root_0
2025-04-17 01:55:23 (27436): Guest Log: -rwxrwxrwx. 1 root root 194275811 Apr 17  2025 HITS.pool.root.1
2025-04-17 01:55:23 (27436): Guest Log: -rwxrwxrwx. 1 root root      9003 Apr 17 02:59 init_data.xml
2025-04-17 01:55:23 (27436): Guest Log: -rwxrwxrwx. 1 root root    508894 Apr 16 21:43 input.tar.gz
2025-04-17 01:55:23 (27436): Guest Log: -rwxrwxrwx. 1 root root   1843200 Apr 17  2025 result.tar.gz
2025-04-17 01:55:23 (27436): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 16 21:43 start_atlas.sh
2025-04-17 01:55:23 (27436): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-17 01:55:23 (27436): VM Completion File Detected.
2025-04-17 01:55:23 (27436): Powering off VM.
2025-04-17 01:55:24 (27436): Successfully stopped VM.
2025-04-17 01:55:24 (27436): Deregistering VM. (boinc_505a7f142d76c9c8, slot#3)
2025-04-17 01:55:24 (27436): Removing network bandwidth throttle group from VM.
2025-04-17 01:55:24 (27436): Removing VM from VirtualBox.
01:55:29 (27436): called boinc_finish(0)

</stderr_txt>
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