Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:11:12 (1210571): wrapper (7.7.26015): starting
15:11:12 (1210571): wrapper: running run_atlas (--nthreads 10)
[2025-04-16 15:11:12] Arguments: --nthreads 10
[2025-04-16 15:11:12] Threads: 10
[2025-04-16 15:11:12] Checking for CVMFS
[2025-04-16 15:11:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-16 15:11:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-16 15:11:14] Running cvmfs_config stat atlas.cern.ch
[2025-04-16 15:11:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-16 15:11:15] 2.12.6.0 6121 45426 233828 144935 2 262 32213613 32935936 19873 130560 0 108373948 99.657 100551018 24524 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-04-16 15:11:15] CVMFS is ok
[2025-04-16 15:11:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-16 15:11:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-16 15:11:15] Further information can be found at the LHC@home message board.
[2025-04-16 15:11:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-16 15:11:15] Checking for apptainer binary...
[2025-04-16 15:11:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-16 15:11:15] Running /usr/bin/apptainer --version
[2025-04-16 15:11:15] apptainer version 1.4.0-1.el9
[2025-04-16 15:11:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-16 15:11:17] c-8-1.aglt2.org
[2025-04-16 15:11:17] apptainer works
[2025-04-16 15:11:17] Set ATHENA_PROC_NUMBER=10
[2025-04-16 15:11:17] Set ATHENA_CORE_NUMBER=10
[2025-04-16 15:11:17] Starting ATLAS job with PandaID=6604148335
[2025-04-16 15:11:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-17 06:27:44]  *** The last 200 lines of the pilot log: ***
[2025-04-17 06:27:44] 2025-04-17 10:27:16,746 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-17 06:27:44] 2025-04-17 10:27:19,294 | INFO     | monitor loop #2644: job 0:6604148335 is in state 'finished'
[2025-04-17 06:27:44] 2025-04-17 10:27:19,299 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-17 06:27:44] 2025-04-17 10:27:20,763 | INFO     | 54858s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-04-17 06:27:44] 2025-04-17 10:27:21,127 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-17 06:27:44] 2025-04-17 10:27:21,128 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6604148335/memory_monitor_summary.json (trf name=prmon)
[2025-04-17 06:27:44] 2025-04-17 10:27:21,128 | INFO     | extracted standard info from prmon json
[2025-04-17 06:27:44] 2025-04-17 10:27:21,129 | INFO     | extracted standard memory fields from prmon json
[2025-04-17 06:27:44] 2025-04-17 10:27:21,129 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-17 06:27:44] 2025-04-17 10:27:21,129 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-17 06:27:44] 2025-04-17 10:27:21,130 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-17 06:27:44] 2025-04-17 10:27:21,164 | INFO     | fitting pss+swap vs Time
[2025-04-17 06:27:44] 2025-04-17 10:27:21,166 | INFO     | sum of square deviations: 221549861023.47314
[2025-04-17 06:27:44] 2025-04-17 10:27:21,211 | INFO     | sum of deviations: 303388954743.0338
[2025-04-17 06:27:44] 2025-04-17 10:27:21,211 | INFO     | mean x: 1744858296.567114
[2025-04-17 06:27:44] 2025-04-17 10:27:21,211 | INFO     | mean y: 2164632.749440716
[2025-04-17 06:27:44] 2025-04-17 10:27:21,211 | INFO     | -- intersect: -2387233096.162339
[2025-04-17 06:27:44] 2025-04-17 10:27:21,211 | INFO     | intersect: -2387233096.162339
[2025-04-17 06:27:44] 2025-04-17 10:27:21,216 | INFO     | chi2: 9.229741490310662
[2025-04-17 06:27:44] 2025-04-17 10:27:21,217 | INFO     | sum of square deviations: 217853350720.53497
[2025-04-17 06:27:44] 2025-04-17 10:27:21,414 | INFO     | sum of deviations: 457745874808.1572
[2025-04-17 06:27:44] 2025-04-17 10:27:21,414 | INFO     | mean x: 1744858144.070866
[2025-04-17 06:27:44] 2025-04-17 10:27:21,414 | INFO     | mean y: 2170988.31496063
[2025-04-17 06:27:44] 2025-04-17 10:27:21,414 | INFO     | -- intersect: -3664064187.4682236
[2025-04-17 06:27:44] 2025-04-17 10:27:21,414 | INFO     | intersect: -3664064187.4682236
[2025-04-17 06:27:44] 2025-04-17 10:27:21,442 | INFO     | chi2: 7.197926524147002
[2025-04-17 06:27:44] 2025-04-17 10:27:21,442 | INFO     | current chi2=7.197926524147002 (change=22.01377978242023 %)
[2025-04-17 06:27:44] 2025-04-17 10:27:21,442 | INFO     | right removable region: 888
[2025-04-17 06:27:44] 2025-04-17 10:27:21,444 | INFO     | sum of square deviations: 217852877480.24753
[2025-04-17 06:27:44] 2025-04-17 10:27:21,624 | INFO     | sum of deviations: 73777092333.06145
[2025-04-17 06:27:44] 2025-04-17 10:27:21,625 | INFO     | mean x: 1744858449.0731158
[2025-04-17 06:27:44] 2025-04-17 10:27:21,625 | INFO     | mean y: 2174099.7682789653
[2025-04-17 06:27:44] 2025-04-17 10:27:21,625 | INFO     | -- intersect: -588731948.3607457
[2025-04-17 06:27:44] 2025-04-17 10:27:21,625 | INFO     | intersect: -588731948.3607457
[2025-04-17 06:27:44] 2025-04-17 10:27:21,638 | INFO     | chi2: 6.00565462580905
[2025-04-17 06:27:44] 2025-04-17 10:27:21,639 | INFO     | current chi2=6.00565462580905 (change=34.93149692097274 %)
[2025-04-17 06:27:44] 2025-04-17 10:27:21,640 | INFO     | sum of square deviations: 214197351887.7694
[2025-04-17 06:27:44] 2025-04-17 10:27:21,734 | INFO     | sum of deviations: -66665230894.07686
[2025-04-17 06:27:44] 2025-04-17 10:27:21,734 | INFO     | mean x: 1744858601.5769231
[2025-04-17 06:27:44] 2025-04-17 10:27:21,734 | INFO     | mean y: 2179956.7511312217
[2025-04-17 06:27:44] 2025-04-17 10:27:21,735 | INFO     | -- intersect: 545237097.8711076
[2025-04-17 06:27:44] 2025-04-17 10:27:21,735 | INFO     | intersect: 545237097.8711076
[2025-04-17 06:27:44] 2025-04-17 10:27:21,736 | INFO     | chi2: 4.813577929367863
[2025-04-17 06:27:44] 2025-04-17 10:27:21,736 | INFO     | current chi2=4.813577929367863 (change=19.849238271516427 %)
[2025-04-17 06:27:44] 2025-04-17 10:27:21,736 | INFO     | left removable region: 20
[2025-04-17 06:27:44] 2025-04-17 10:27:21,738 | INFO     | sum of square deviations: 202775077229.62747
[2025-04-17 06:27:44] 2025-04-17 10:27:21,823 | INFO     | sum of deviations: -153119810716.544
[2025-04-17 06:27:44] 2025-04-17 10:27:21,823 | INFO     | mean x: 1744858723.592166
[2025-04-17 06:27:44] 2025-04-17 10:27:21,823 | INFO     | mean y: 2197185.831797235
[2025-04-17 06:27:44] 2025-04-17 10:27:21,823 | INFO     | -- intersect: 1319777438.4630928
[2025-04-17 06:27:44] 2025-04-17 10:27:21,823 | INFO     | intersect: 1319777438.4630928
[2025-04-17 06:27:44] 2025-04-17 10:27:21,839 | INFO     | chi2: 0.8686852619671059
[2025-04-17 06:27:44] 2025-04-17 10:27:21,839 | INFO     | -- intersect: 1319777438.4630928
[2025-04-17 06:27:44] 2025-04-17 10:27:21,839 | INFO     | current memory leak: -0.76 B/s (using 868 data points, chi2=0.87)
[2025-04-17 06:27:44] 2025-04-17 10:27:21,841 | INFO     | ..............................
[2025-04-17 06:27:44] 2025-04-17 10:27:21,841 | INFO     | . Timing measurements:
[2025-04-17 06:27:44] 2025-04-17 10:27:21,841 | INFO     | . get job = 1 s
[2025-04-17 06:27:44] 2025-04-17 10:27:21,841 | INFO     | . initial setup = 19 s
[2025-04-17 06:27:44] 2025-04-17 10:27:21,841 | INFO     | . payload setup = 76 s
[2025-04-17 06:27:44] 2025-04-17 10:27:21,841 | INFO     | . stage-in = 1 s
[2025-04-17 06:27:44] 2025-04-17 10:27:21,841 | INFO     | . payload execution = 54556 s
[2025-04-17 06:27:44] 2025-04-17 10:27:21,841 | INFO     | . stage-out = 10 s
[2025-04-17 06:27:44] 2025-04-17 10:27:21,842 | INFO     | . log creation = 2 s
[2025-04-17 06:27:44] 2025-04-17 10:27:21,852 | INFO     | ..............................
[2025-04-17 06:27:44] 2025-04-17 10:27:21,852 | INFO     | monitor loop #2645: job 0:6604148335 is in state 'finished'
[2025-04-17 06:27:44] 2025-04-17 10:27:21,881 | WARNING  | exception caught: deque index out of range
[2025-04-17 06:27:44] 2025-04-17 10:27:22,843 | INFO     | 
[2025-04-17 06:27:44] 2025-04-17 10:27:22,843 | INFO     | job summary report
[2025-04-17 06:27:44] 2025-04-17 10:27:22,843 | INFO     | --------------------------------------------------
[2025-04-17 06:27:44] 2025-04-17 10:27:22,843 | INFO     | PanDA job id: 6604148335
[2025-04-17 06:27:44] 2025-04-17 10:27:22,843 | INFO     | task id: 44075483
[2025-04-17 06:27:44] 2025-04-17 10:27:22,843 | INFO     | errors: (none)
[2025-04-17 06:27:44] 2025-04-17 10:27:22,844 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-17 06:27:44] 2025-04-17 10:27:22,844 | INFO     | pilot state: finished 
[2025-04-17 06:27:44] 2025-04-17 10:27:22,844 | INFO     | transexitcode: 0
[2025-04-17 06:27:44] 2025-04-17 10:27:22,844 | INFO     | exeerrorcode: 0
[2025-04-17 06:27:44] 2025-04-17 10:27:22,844 | INFO     | exeerrordiag: 
[2025-04-17 06:27:44] 2025-04-17 10:27:22,844 | INFO     | exitcode: 0
[2025-04-17 06:27:44] 2025-04-17 10:27:22,844 | INFO     | exitmsg: OK
[2025-04-17 06:27:44] 2025-04-17 10:27:22,844 | INFO     | cpuconsumptiontime: 52676 s
[2025-04-17 06:27:44] 2025-04-17 10:27:22,844 | INFO     | nevents: 400
[2025-04-17 06:27:44] 2025-04-17 10:27:22,844 | INFO     | neventsw: 0
[2025-04-17 06:27:44] 2025-04-17 10:27:22,845 | INFO     | pid: 1239833
[2025-04-17 06:27:44] 2025-04-17 10:27:22,845 | INFO     | pgrp: 1239833
[2025-04-17 06:27:44] 2025-04-17 10:27:22,845 | INFO     | corecount: 10
[2025-04-17 06:27:44] 2025-04-17 10:27:22,845 | INFO     | event service: False
[2025-04-17 06:27:44] 2025-04-17 10:27:22,845 | INFO     | sizes: {0: 2416538, 1: 2417139, 2: 2417223, 3: 2417450, 4: 2417450, 16: 2417478, 27: 2417634, 39: 2417662, 51: 2417690, 62: 2417718, 64: 2417952, 73: 2418288, 5463
[2025-04-17 06:27:44] 2025-04-17 10:27:22,845 | INFO     | --------------------------------------------------
[2025-04-17 06:27:44] 2025-04-17 10:27:22,845 | INFO     | 
[2025-04-17 06:27:44] 2025-04-17 10:27:22,845 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-04-17 06:27:44] 2025-04-17 10:27:23,257 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-17 06:27:44] 2025-04-17 10:27:23,258 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-17 06:27:44] 2025-04-17 10:27:23,258 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-17 06:27:44] 2025-04-17 10:27:23,258 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-17 06:27:44] 2025-04-17 10:27:23,258 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-17 06:27:44] 2025-04-17 10:27:23,258 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-17 06:27:44] 2025-04-17 10:27:23,258 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-17 06:27:44] 2025-04-17 10:27:23,258 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-17 06:27:44] 2025-04-17 10:27:23,258 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-17 06:27:44] 2025-04-17 10:27:23,258 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-17 06:27:44] 2025-04-17 10:27:23,259 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-17 06:27:44] 2025-04-17 10:27:23,259 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-17 06:27:44] 2025-04-17 10:27:23,259 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-17 06:27:44] 2025-04-17 10:27:23,259 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-17 06:27:44] 2025-04-17 10:27:23,259 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-17 06:27:44] 2025-04-17 10:27:23,259 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-17 06:27:44] 2025-04-17 10:27:23,259 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-17 06:27:44] 2025-04-17 10:27:23,259 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-17 06:27:44] 2025-04-17 10:27:23,260 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-17 06:27:44] 2025-04-17 10:27:23,260 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-17 06:27:44] 2025-04-17 10:27:23,260 | INFO     | job 6604148335 has completed (purged errors)
[2025-04-17 06:27:44] 2025-04-17 10:27:23,260 | INFO     | overall cleanup function is called
[2025-04-17 06:27:44] 2025-04-17 10:27:24,322 | INFO     | --- collectZombieJob: --- 10, [1239833]
[2025-04-17 06:27:44] 2025-04-17 10:27:24,323 | INFO     | zombie collector waiting for pid 1239833
[2025-04-17 06:27:44] 2025-04-17 10:27:24,323 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-17 06:27:44] 2025-04-17 10:27:24,324 | INFO     | collected zombie processes
[2025-04-17 06:27:44] 2025-04-17 10:27:24,324 | INFO     | will attempt to kill all subprocesses of pid=1239833
[2025-04-17 06:27:44] 2025-04-17 10:27:28,937 | INFO     | PID=1221806 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-04-17 06:27:44] 2025-04-17 10:27:28,942 | INFO     | .. there are 40 such processes running
[2025-04-17 06:27:44] 2025-04-17 10:27:29,104 | INFO     | process IDs to be killed: [1239833] (in reverse order)
[2025-04-17 06:27:44] 2025-04-17 10:27:29,279 | WARNING  | found no corresponding commands to process id(s)
[2025-04-17 06:27:44] 2025-04-17 10:27:29,280 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-17 06:27:44] 2025-04-17 10:27:29,318 | INFO     | did not find any defunct processes belonging to 1239833
[2025-04-17 06:27:44] 2025-04-17 10:27:29,352 | INFO     | did not find any defunct processes belonging to 1239833
[2025-04-17 06:27:44] 2025-04-17 10:27:29,358 | INFO     | ready for new job
[2025-04-17 06:27:44] 2025-04-17 10:27:29,358 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-17 06:27:44] 2025-04-17 10:27:29,365 | INFO     | **************************************
[2025-04-17 06:27:44] 2025-04-17 10:27:29,366 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-17 06:27:44] 2025-04-17 10:27:29,366 | INFO     | **************************************
[2025-04-17 06:27:44] 2025-04-17 10:27:29,366 | INFO     | 
[2025-04-17 06:27:44] 2025-04-17 10:27:29,381 | INFO     | architecture information:
[2025-04-17 06:27:44] 2025-04-17 10:27:29,385 | INFO     | executing command: cat /etc/os-release
[2025-04-17 06:27:44] 2025-04-17 10:27:29,537 | INFO     | cat /etc/os-release:
[2025-04-17 06:27:44] NAME="CentOS Linux"
[2025-04-17 06:27:44] VERSION="7 (Core)"
[2025-04-17 06:27:44] ID="centos"
[2025-04-17 06:27:44] ID_LIKE="rhel fedora"
[2025-04-17 06:27:44] VERSION_ID="7"
[2025-04-17 06:27:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-17 06:27:44] ANSI_COLOR="0;31"
[2025-04-17 06:27:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-17 06:27:44] HOME_URL="https://www.centos.org/"
[2025-04-17 06:27:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-17 06:27:44] 
[2025-04-17 06:27:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-17 06:27:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-17 06:27:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-17 06:27:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-17 06:27:44] 
[2025-04-17 06:27:44] 2025-04-17 10:27:29,537 | INFO     | **************************************
[2025-04-17 06:27:44] 2025-04-17 10:27:30,041 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-04-17 06:27:44] 2025-04-17 10:27:30,141 | INFO     | sufficient remaining disk space (75868667904 B)
[2025-04-17 06:27:44] 2025-04-17 10:27:30,142 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-17 06:27:44] 2025-04-17 10:27:30,142 | INFO     | current server update state: UPDATING_FINAL
[2025-04-17 06:27:44] 2025-04-17 10:27:30,142 | INFO     | update_server=False
[2025-04-17 06:27:44] 2025-04-17 10:27:30,142 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-17 06:27:44] 2025-04-17 10:27:30,168 | INFO     | all data control threads have been joined
[2025-04-17 06:27:44] 2025-04-17 10:27:30,609 | INFO     | all payload control threads have been joined
[2025-04-17 06:27:44] 2025-04-17 10:27:30,895 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-17 06:27:44] 2025-04-17 10:27:30,895 | INFO     | aborting loop
[2025-04-17 06:27:44] 2025-04-17 10:27:30,958 | INFO     | found 0 job(s) in 20 queues
[2025-04-17 06:27:44] 2025-04-17 10:27:30,958 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-17 06:27:44] 2025-04-17 10:27:30,958 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-17 06:27:44] 2025-04-17 10:27:31,094 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-17 06:27:44] 2025-04-17 10:27:31,149 | INFO     | [job] retrieve thread has finished
[2025-04-17 06:27:44] 2025-04-17 10:27:31,177 | INFO     | [data] control thread has finished
[2025-04-17 06:27:44] 2025-04-17 10:27:31,185 | INFO     | [data] copytool_in thread has finished
[2025-04-17 06:27:44] 2025-04-17 10:27:31,366 | INFO     | [payload] failed_post thread has finished
[2025-04-17 06:27:44] 2025-04-17 10:27:31,611 | INFO     | [job] validate thread has finished
[2025-04-17 06:27:44] 2025-04-17 10:27:31,621 | INFO     | [payload] control thread has finished
[2025-04-17 06:27:44] 2025-04-17 10:27:31,714 | INFO     | all job control threads have been joined
[2025-04-17 06:27:44] 2025-04-17 10:27:31,818 | INFO     | [payload] validate_pre thread has finished
[2025-04-17 06:27:44] 2025-04-17 10:27:31,818 | INFO     | [job] create_data_payload thread has finished
[2025-04-17 06:27:44] 2025-04-17 10:27:31,852 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-17 06:27:44] 2025-04-17 10:27:31,917 | INFO     | [job] job monitor thread has finished
[2025-04-17 06:27:44] 2025-04-17 10:27:32,116 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-17 06:27:44] 2025-04-17 10:27:32,175 | INFO     | [payload] validate_post thread has finished
[2025-04-17 06:27:44] 2025-04-17 10:27:32,189 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-17 06:27:44] 2025-04-17 10:27:32,340 | INFO     | [payload] execute_payloads thread has finished
[2025-04-17 06:27:44] 2025-04-17 10:27:32,721 | INFO     | [job] control thread has finished
[2025-04-17 06:27:44] 2025-04-17 10:27:33,135 | INFO     | [data] copytool_out thread has finished
[2025-04-17 06:27:44] 2025-04-17 10:27:33,236 | INFO     | [job] queue monitor thread has finished
[2025-04-17 06:27:44] 2025-04-17 10:27:36,134 | INFO     | [data] queue_monitor thread has finished
[2025-04-17 06:27:44] 2025-04-17 10:27:36,244 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140245645956928)>', '<ExcThread(monitor, started 140244624070400)>']
[2025-04-17 06:27:44] 2025-04-17 10:27:37,045 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-17 06:27:44] 2025-04-17 10:27:37,045 | INFO     | [monitor] control thread has ended
[2025-04-17 06:27:44] 2025-04-17 10:27:41,279 | INFO     | all workflow threads have been joined
[2025-04-17 06:27:44] 2025-04-17 10:27:41,279 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-17 06:27:44] 2025-04-17 10:27:41,280 | INFO     | traces error code: 0
[2025-04-17 06:27:44] 2025-04-17 10:27:41,280 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-17 06:27:44] 2025-04-17 10:27:42,257 [wrapper] ==== pilot stdout END ====
[2025-04-17 06:27:44] 2025-04-17 10:27:42,260 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-17 06:27:44] 2025-04-17 10:27:42,263 [wrapper] pilotpid: 1221806
[2025-04-17 06:27:44] 2025-04-17 10:27:42,298 [wrapper] Pilot exit status: 0
[2025-04-17 06:27:44] 2025-04-17 10:27:42,427 [wrapper] pandaids: 6604148335
[2025-04-17 06:27:44] 2025-04-17 10:27:43,128 [wrapper] cleanup supervisor_pilot 2137291 1221807
[2025-04-17 06:27:44] 2025-04-17 10:27:43,148 [wrapper] Test setup, not cleaning
[2025-04-17 06:27:44] 2025-04-17 10:27:43,211 [wrapper] apfmon messages muted
[2025-04-17 06:27:44] 2025-04-17 10:27:43,283 [wrapper] ==== wrapper stdout END ====
[2025-04-17 06:27:44] 2025-04-17 10:27:43,360 [wrapper] ==== wrapper stderr END ====
[2025-04-17 06:27:44]  *** Error codes and diagnostics ***
[2025-04-17 06:27:44]     "exeErrorCode": 0,
[2025-04-17 06:27:44]     "exeErrorDiag": "",
[2025-04-17 06:27:44]     "pilotErrorCode": 0,
[2025-04-17 06:27:44]     "pilotErrorDiag": "",
[2025-04-17 06:27:44]  *** Listing of results directory ***
[2025-04-17 06:27:44] total 425848
[2025-04-17 06:27:44] -rw-r--r--. 1 boincer umatlas      5111 Apr 16 12:43 queuedata.json
[2025-04-17 06:27:44] -rwx------. 1 boincer umatlas     37140 Apr 16 12:43 runpilot2-wrapper.sh
[2025-04-17 06:27:44] -rw-r--r--. 1 boincer umatlas    495897 Apr 16 12:43 pilot3.tar.gz
[2025-04-17 06:27:44] -rw-r--r--. 1 boincer umatlas       100 Apr 16 15:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-17 06:27:44] -rwxr-xr-x. 1 boincer umatlas      7986 Apr 16 15:11 run_atlas
[2025-04-17 06:27:44] -rw-r--r--. 1 boincer umatlas       105 Apr 16 15:11 job.xml
[2025-04-17 06:27:44] -rw-r--r--. 2 boincer umatlas 223254978 Apr 16 15:11 EVNT.44075481._001675.pool.root.1
[2025-04-17 06:27:44] -rw-r--r--. 2 boincer umatlas     17569 Apr 16 15:11 start_atlas.sh
[2025-04-17 06:27:44] drwxrwx--x. 2 boincer umatlas      4096 Apr 16 15:11 shared
[2025-04-17 06:27:44] -rw-r--r--. 2 boincer umatlas    508889 Apr 16 15:11 input.tar.gz
[2025-04-17 06:27:44] -rw-r--r--. 1 boincer umatlas         0 Apr 16 15:11 boinc_lockfile
[2025-04-17 06:27:44] -rw-r--r--. 1 boincer umatlas      2579 Apr 16 15:11 pandaJob.out
[2025-04-17 06:27:44] -rw-------. 1 boincer umatlas       467 Apr 16 15:11 setup.sh.local
[2025-04-17 06:27:44] -rw-------. 1 boincer umatlas    986552 Apr 16 15:13 agis_schedconf.cvmfs.json
[2025-04-17 06:27:44] drwx------. 4 boincer umatlas      4096 Apr 16 15:13 pilot3
[2025-04-17 06:27:44] -rw-------. 1 boincer umatlas 199987181 Apr 17 06:22 HITS.44075483._042784.pool.root.1
[2025-04-17 06:27:44] -rw-r--r--. 1 boincer umatlas      6657 Apr 17 06:22 init_data.xml
[2025-04-17 06:27:44] -rw-r--r--. 1 boincer umatlas       531 Apr 17 06:22 boinc_task_state.xml
[2025-04-17 06:27:44] -rw-------. 1 boincer umatlas      1041 Apr 17 06:26 memory_monitor_summary.json
[2025-04-17 06:27:44] -rw-------. 1 boincer umatlas   1618536 Apr 17 06:26 agis_ddmendpoints.agis.ALL.json
[2025-04-17 06:27:44] -rw-------. 1 boincer umatlas    735765 Apr 17 06:26 log.44075483._042784.job.log.tgz.1
[2025-04-17 06:27:44] -rw-------. 1 boincer umatlas        95 Apr 17 06:26 pilot_heartbeat.json
[2025-04-17 06:27:44] -rw-------. 1 boincer umatlas      7723 Apr 17 06:27 heartbeat.json
[2025-04-17 06:27:44] -rw-------. 1 boincer umatlas      4353 Apr 17 06:27 pilotlog.txt
[2025-04-17 06:27:44] -rw-------. 1 boincer umatlas   3750823 Apr 17 06:27 log.44075483._042784.job.log.1
[2025-04-17 06:27:44] -rw-r--r--. 1 boincer umatlas        28 Apr 17 06:27 wrapper_checkpoint.txt
[2025-04-17 06:27:44] -rw-r--r--. 1 boincer umatlas      8192 Apr 17 06:27 boinc_mmap_file
[2025-04-17 06:27:44] -rw-------. 1 boincer umatlas       357 Apr 17 06:27 output.list
[2025-04-17 06:27:44] -rw-r--r--. 1 boincer umatlas       620 Apr 17 06:27 runtime_log
[2025-04-17 06:27:44] -rw-------. 1 boincer umatlas   4505600 Apr 17 06:27 result.tar.gz
[2025-04-17 06:27:44] -rw-------. 1 boincer umatlas       655 Apr 17 06:27 tpmKDmU2KP7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmVp2KDmX7besm.diag
[2025-04-17 06:27:44] -rw-r--r--. 1 boincer umatlas     11406 Apr 17 06:27 runtime_log.err
[2025-04-17 06:27:44] -rw-r--r--. 1 boincer umatlas     21256 Apr 17 06:27 stderr.txt
[2025-04-17 06:27:44] HITS file was successfully produced:
[2025-04-17 06:27:44] -rw-------. 1 boincer umatlas 199987181 Apr 17 06:22 shared/HITS.pool.root.1
[2025-04-17 06:27:44]  *** Contents of shared directory: ***
[2025-04-17 06:27:44] total 418248
[2025-04-17 06:27:44] -rw-r--r--. 2 boincer umatlas 223254978 Apr 16 15:11 ATLAS.root_0
[2025-04-17 06:27:44] -rw-r--r--. 2 boincer umatlas     17569 Apr 16 15:11 start_atlas.sh
[2025-04-17 06:27:44] -rw-r--r--. 2 boincer umatlas    508889 Apr 16 15:11 input.tar.gz
[2025-04-17 06:27:44] -rw-------. 1 boincer umatlas 199987181 Apr 17 06:22 HITS.pool.root.1
[2025-04-17 06:27:44] -rw-------. 1 boincer umatlas   4505600 Apr 17 06:27 result.tar.gz
06:27:46 (1210571): run_atlas exited; CPU time 55247.041725
06:27:46 (1210571): called boinc_finish(0)

</stderr_txt>
]]>

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