Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:18:02 (24452): wrapper (7.7.26015): starting
14:18:02 (24452): wrapper: running run_atlas (--nthreads 10)
[2025-04-16 14:18:03] Arguments: --nthreads 10
[2025-04-16 14:18:03] Threads: 10
[2025-04-16 14:18:03] Checking for CVMFS
[2025-04-16 14:18:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-16 14:18:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-16 14:18:04] Running cvmfs_config stat atlas.cern.ch
[2025-04-16 14:18:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-16 14:18:07] 2.11.2.0 10268 38632 394928 144935 3 147 10906206 18432001 16814 130560 0 119268166 98.904 318552610 35139 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-16 14:18:07] CVMFS is ok
[2025-04-16 14:18:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-16 14:18:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-16 14:18:07] Further information can be found at the LHC@home message board.
[2025-04-16 14:18:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-16 14:18:07] Checking for apptainer binary...
[2025-04-16 14:18:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-16 14:18:07] Running /usr/bin/apptainer --version
[2025-04-16 14:18:07] apptainer version 1.3.2-1.el7
[2025-04-16 14:18:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-16 14:18:41] c-211-22.aglt2.org
[2025-04-16 14:18:41] apptainer works
[2025-04-16 14:18:41] Set ATHENA_PROC_NUMBER=10
[2025-04-16 14:18:41] Set ATHENA_CORE_NUMBER=10
[2025-04-16 14:18:41] Starting ATLAS job with PandaID=6604097539
[2025-04-16 14:18:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-18 13:48:16]  *** The last 200 lines of the pilot log: ***
[2025-04-18 13:48:16] 2025-04-18 17:47:42,733 | INFO     | -- intersect: -1788940390.7911134
[2025-04-18 13:48:16] 2025-04-18 17:47:42,733 | INFO     | intersect: -1788940390.7911134
[2025-04-18 13:48:16] 2025-04-18 17:47:42,754 | INFO     | chi2: 14.114048544360342
[2025-04-18 13:48:16] 2025-04-18 17:47:42,754 | INFO     | current chi2=14.114048544360342 (change=14.289054213706379 %)
[2025-04-18 13:48:16] 2025-04-18 17:47:42,754 | INFO     | right removable region: 2785
[2025-04-18 13:48:16] 2025-04-18 17:47:42,777 | INFO     | sum of square deviations: 6705380016257.014
[2025-04-18 13:48:16] 2025-04-18 17:47:44,645 | INFO     | sum of deviations: 5294134270177.795
[2025-04-18 13:48:16] 2025-04-18 17:47:44,646 | INFO     | mean x: 1744913359.3248384
[2025-04-18 13:48:16] 2025-04-18 17:47:44,646 | INFO     | mean y: 2554844.371500359
[2025-04-18 13:48:16] 2025-04-18 17:47:44,646 | INFO     | -- intersect: -1375115860.5991168
[2025-04-18 13:48:16] 2025-04-18 17:47:44,646 | INFO     | intersect: -1375115860.5991168
[2025-04-18 13:48:16] 2025-04-18 17:47:44,669 | INFO     | chi2: 11.924616789011957
[2025-04-18 13:48:16] 2025-04-18 17:47:44,669 | INFO     | current chi2=11.924616789011957 (change=27.584903799007627 %)
[2025-04-18 13:48:16] 2025-04-18 17:47:44,812 | INFO     | monitor loop #6057: job 0:6604097539 is in state 'finished'
[2025-04-18 13:48:16] 2025-04-18 17:47:44,816 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-18 13:48:16] 2025-04-18 17:47:44,834 | INFO     | sum of square deviations: 6669341166677.84
[2025-04-18 13:48:16] 2025-04-18 17:47:46,989 | INFO     | sum of deviations: 4406464448073.037
[2025-04-18 13:48:16] 2025-04-18 17:47:46,989 | INFO     | mean x: 1744913511.8281193
[2025-04-18 13:48:16] 2025-04-18 17:47:46,989 | INFO     | mean y: 2558600.554476807
[2025-04-18 13:48:16] 2025-04-18 17:47:47,014 | INFO     | -- intersect: -1150313799.0835981
[2025-04-18 13:48:16] 2025-04-18 17:47:47,014 | INFO     | intersect: -1150313799.0835981
[2025-04-18 13:48:16] 2025-04-18 17:47:47,045 | INFO     | chi2: 8.543024788160983
[2025-04-18 13:48:16] 2025-04-18 17:47:47,070 | INFO     | current chi2=8.543024788160983 (change=28.35807691503321 %)
[2025-04-18 13:48:16] 2025-04-18 17:47:47,096 | INFO     | sum of square deviations: 6633431668361.098
[2025-04-18 13:48:16] 2025-04-18 17:47:47,469 | INFO     | monitor loop #6058: job 0:6604097539 is in state 'finished'
[2025-04-18 13:48:16] 2025-04-18 17:47:47,469 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-18 13:48:16] 2025-04-18 17:47:50,032 | INFO     | sum of deviations: 3686582107853.608
[2025-04-18 13:48:16] 2025-04-18 17:47:50,086 | INFO     | mean x: 1744913664.331412
[2025-04-18 13:48:16] 2025-04-18 17:47:50,086 | INFO     | mean y: 2561657.5515129683
[2025-04-18 13:48:16] 2025-04-18 17:47:50,086 | INFO     | -- intersect: -967187910.4368439
[2025-04-18 13:48:16] 2025-04-18 17:47:50,133 | INFO     | intersect: -967187910.4368439
[2025-04-18 13:48:16] 2025-04-18 17:47:50,087 | INFO     | monitor loop #6059: job 0:6604097539 is in state 'finished'
[2025-04-18 13:48:16] 2025-04-18 17:47:50,146 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-18 13:48:16] 2025-04-18 17:47:50,261 | INFO     | chi2: 6.337501241229366
[2025-04-18 13:48:16] 2025-04-18 17:47:50,262 | INFO     | current chi2=6.337501241229366 (change=25.816658638144833 %)
[2025-04-18 13:48:16] 2025-04-18 17:47:50,434 | INFO     | sum of square deviations: 6597651288744.276
[2025-04-18 13:48:16] 2025-04-18 17:47:52,381 | INFO     | sum of deviations: 3094831070904.249
[2025-04-18 13:48:16] 2025-04-18 17:47:52,382 | INFO     | mean x: 1744913816.8347168
[2025-04-18 13:48:16] 2025-04-18 17:47:52,382 | INFO     | mean y: 2564179.5463731503
[2025-04-18 13:48:16] 2025-04-18 17:47:52,382 | INFO     | -- intersect: -815941264.2928729
[2025-04-18 13:48:16] 2025-04-18 17:47:52,383 | INFO     | intersect: -815941264.2928729
[2025-04-18 13:48:16] 2025-04-18 17:47:52,395 | INFO     | chi2: 4.867571259342487
[2025-04-18 13:48:16] 2025-04-18 17:47:52,395 | INFO     | current chi2=4.867571259342487 (change=23.19415690720619 %)
[2025-04-18 13:48:16] 2025-04-18 17:47:52,395 | INFO     | left removable region: 40
[2025-04-18 13:48:16] 2025-04-18 17:47:52,399 | INFO     | sum of square deviations: 6413670278399.814
[2025-04-18 13:48:16] 2025-04-18 17:47:52,685 | INFO     | monitor loop #6060: job 0:6604097539 is in state 'finished'
[2025-04-18 13:48:16] 2025-04-18 17:47:52,685 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-18 13:48:16] 2025-04-18 17:47:53,470 | INFO     | sum of deviations: 2326267259292.595
[2025-04-18 13:48:16] 2025-04-18 17:47:53,475 | INFO     | mean x: 1744914243.8459017
[2025-04-18 13:48:16] 2025-04-18 17:47:53,475 | INFO     | mean y: 2572388.422222222
[2025-04-18 13:48:16] 2025-04-18 17:47:53,475 | INFO     | -- intersect: -630315911.0281754
[2025-04-18 13:48:16] 2025-04-18 17:47:53,476 | INFO     | intersect: -630315911.0281754
[2025-04-18 13:48:16] 2025-04-18 17:47:53,480 | INFO     | chi2: 0.25230105914259604
[2025-04-18 13:48:16] 2025-04-18 17:47:53,480 | INFO     | -- intersect: -630315911.0281754
[2025-04-18 13:48:16] 2025-04-18 17:47:53,480 | INFO     | current memory leak: 0.36 B/s (using 2745 data points, chi2=0.25)
[2025-04-18 13:48:16] 2025-04-18 17:47:53,483 | INFO     | ..............................
[2025-04-18 13:48:16] 2025-04-18 17:47:53,483 | INFO     | . Timing measurements:
[2025-04-18 13:48:16] 2025-04-18 17:47:53,483 | INFO     | . get job = 1 s
[2025-04-18 13:48:16] 2025-04-18 17:47:53,484 | INFO     | . initial setup = 11 s
[2025-04-18 13:48:16] 2025-04-18 17:47:53,484 | INFO     | . payload setup = 131 s
[2025-04-18 13:48:16] 2025-04-18 17:47:53,484 | INFO     | . stage-in = 1 s
[2025-04-18 13:48:16] 2025-04-18 17:47:53,484 | INFO     | . payload execution = 170342 s
[2025-04-18 13:48:16] 2025-04-18 17:47:53,484 | INFO     | . stage-out = 21 s
[2025-04-18 13:48:16] 2025-04-18 17:47:53,484 | INFO     | . log creation = 5 s
[2025-04-18 13:48:16] 2025-04-18 17:47:53,485 | INFO     | ..............................
[2025-04-18 13:48:16] 2025-04-18 17:47:53,705 | INFO     | 
[2025-04-18 13:48:16] 2025-04-18 17:47:53,705 | INFO     | job summary report
[2025-04-18 13:48:16] 2025-04-18 17:47:53,705 | INFO     | --------------------------------------------------
[2025-04-18 13:48:16] 2025-04-18 17:47:53,705 | INFO     | PanDA job id: 6604097539
[2025-04-18 13:48:16] 2025-04-18 17:47:53,705 | INFO     | task id: 44075483
[2025-04-18 13:48:16] 2025-04-18 17:47:53,706 | INFO     | errors: (none)
[2025-04-18 13:48:16] 2025-04-18 17:47:53,706 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-18 13:48:16] 2025-04-18 17:47:53,706 | INFO     | pilot state: finished 
[2025-04-18 13:48:16] 2025-04-18 17:47:53,706 | INFO     | transexitcode: 0
[2025-04-18 13:48:16] 2025-04-18 17:47:53,706 | INFO     | exeerrorcode: 0
[2025-04-18 13:48:16] 2025-04-18 17:47:53,706 | INFO     | exeerrordiag: 
[2025-04-18 13:48:16] 2025-04-18 17:47:53,707 | INFO     | exitcode: 0
[2025-04-18 13:48:16] 2025-04-18 17:47:53,707 | INFO     | exitmsg: OK
[2025-04-18 13:48:16] 2025-04-18 17:47:53,707 | INFO     | cpuconsumptiontime: 97335 s
[2025-04-18 13:48:16] 2025-04-18 17:47:53,707 | INFO     | nevents: 400
[2025-04-18 13:48:16] 2025-04-18 17:47:53,707 | INFO     | neventsw: 0
[2025-04-18 13:48:16] 2025-04-18 17:47:53,707 | INFO     | pid: 43272
[2025-04-18 13:48:16] 2025-04-18 17:47:53,708 | INFO     | pgrp: 43272
[2025-04-18 13:48:16] 2025-04-18 17:47:53,708 | INFO     | corecount: 10
[2025-04-18 13:48:16] 2025-04-18 17:47:53,708 | INFO     | event service: False
[2025-04-18 13:48:16] 2025-04-18 17:47:53,708 | INFO     | sizes: {0: 2416538, 2: 2417139, 3: 2417251, 4: 2417422, 5: 2417450, 6: 2417506, 17: 2417662, 28: 2417690, 39: 2417718, 51: 2417746, 62: 2417774, 75: 2418316, 86: 2
[2025-04-18 13:48:16] 2025-04-18 17:47:53,708 | INFO     | --------------------------------------------------
[2025-04-18 13:48:16] 2025-04-18 17:47:53,708 | INFO     | 
[2025-04-18 13:48:16] 2025-04-18 17:47:53,717 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-04-18 13:48:16] 2025-04-18 17:47:54,336 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-18 13:48:16] 2025-04-18 17:47:54,336 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-18 13:48:16] 2025-04-18 17:47:54,336 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-18 13:48:16] 2025-04-18 17:47:54,337 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-18 13:48:16] 2025-04-18 17:47:54,345 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-18 13:48:16] 2025-04-18 17:47:54,345 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-18 13:48:16] 2025-04-18 17:47:54,345 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-18 13:48:16] 2025-04-18 17:47:54,345 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-18 13:48:16] 2025-04-18 17:47:54,345 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-18 13:48:16] 2025-04-18 17:47:54,346 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-18 13:48:16] 2025-04-18 17:47:54,346 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-18 13:48:16] 2025-04-18 17:47:54,346 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-18 13:48:16] 2025-04-18 17:47:54,346 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-18 13:48:16] 2025-04-18 17:47:54,346 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-18 13:48:16] 2025-04-18 17:47:54,346 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-18 13:48:16] 2025-04-18 17:47:54,347 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-18 13:48:16] 2025-04-18 17:47:54,347 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-18 13:48:16] 2025-04-18 17:47:54,347 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-18 13:48:16] 2025-04-18 17:47:54,347 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-18 13:48:16] 2025-04-18 17:47:54,347 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-18 13:48:16] 2025-04-18 17:47:54,348 | INFO     | job 6604097539 has completed (purged errors)
[2025-04-18 13:48:16] 2025-04-18 17:47:54,348 | INFO     | overall cleanup function is called
[2025-04-18 13:48:16] 2025-04-18 17:47:54,394 | INFO     | PID=33468 has CPU usage=8.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-04-18 13:48:16] 2025-04-18 17:47:54,395 | INFO     | .. there are 41 such processes running
[2025-04-18 13:48:16] 2025-04-18 17:47:55,377 | INFO     | --- collectZombieJob: --- 10, [43272]
[2025-04-18 13:48:16] 2025-04-18 17:47:55,377 | INFO     | zombie collector waiting for pid 43272
[2025-04-18 13:48:16] 2025-04-18 17:47:55,377 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-18 13:48:16] 2025-04-18 17:47:55,377 | INFO     | collected zombie processes
[2025-04-18 13:48:16] 2025-04-18 17:47:55,377 | INFO     | will attempt to kill all subprocesses of pid=43272
[2025-04-18 13:48:16] 2025-04-18 17:47:58,696 | INFO     | process IDs to be killed: [43272] (in reverse order)
[2025-04-18 13:48:16] 2025-04-18 17:47:59,552 | WARNING  | found no corresponding commands to process id(s)
[2025-04-18 13:48:16] 2025-04-18 17:47:59,553 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-18 13:48:16] 2025-04-18 17:47:59,579 | INFO     | did not find any defunct processes belonging to 43272
[2025-04-18 13:48:16] 2025-04-18 17:47:59,604 | INFO     | did not find any defunct processes belonging to 43272
[2025-04-18 13:48:16] 2025-04-18 17:47:59,606 | INFO     | ready for new job
[2025-04-18 13:48:16] 2025-04-18 17:47:59,606 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-18 13:48:16] 2025-04-18 17:47:59,619 | INFO     | **************************************
[2025-04-18 13:48:16] 2025-04-18 17:47:59,619 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-18 13:48:16] 2025-04-18 17:47:59,619 | INFO     | **************************************
[2025-04-18 13:48:16] 2025-04-18 17:47:59,619 | INFO     | 
[2025-04-18 13:48:16] 2025-04-18 17:47:59,622 | INFO     | architecture information:
[2025-04-18 13:48:16] 2025-04-18 17:47:59,629 | INFO     | executing command: cat /etc/os-release
[2025-04-18 13:48:16] 2025-04-18 17:47:59,851 | INFO     | cat /etc/os-release:
[2025-04-18 13:48:16] NAME="CentOS Linux"
[2025-04-18 13:48:16] VERSION="7 (Core)"
[2025-04-18 13:48:16] ID="centos"
[2025-04-18 13:48:16] ID_LIKE="rhel fedora"
[2025-04-18 13:48:16] VERSION_ID="7"
[2025-04-18 13:48:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-18 13:48:16] ANSI_COLOR="0;31"
[2025-04-18 13:48:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-18 13:48:16] HOME_URL="https://www.centos.org/"
[2025-04-18 13:48:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-18 13:48:16] 
[2025-04-18 13:48:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-18 13:48:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-18 13:48:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-18 13:48:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-18 13:48:16] 
[2025-04-18 13:48:16] 2025-04-18 17:47:59,851 | INFO     | **************************************
[2025-04-18 13:48:16] 2025-04-18 17:48:00,355 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-04-18 13:48:16] 2025-04-18 17:48:00,492 | INFO     | sufficient remaining disk space (57072943104 B)
[2025-04-18 13:48:16] 2025-04-18 17:48:00,492 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-18 13:48:16] 2025-04-18 17:48:00,498 | INFO     | current server update state: UPDATING_FINAL
[2025-04-18 13:48:16] 2025-04-18 17:48:00,498 | INFO     | update_server=False
[2025-04-18 13:48:16] 2025-04-18 17:48:00,498 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-18 13:48:16] 2025-04-18 17:48:00,499 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-18 13:48:16] 2025-04-18 17:48:00,501 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-18 13:48:16] 2025-04-18 17:48:00,501 | INFO     | found 0 job(s) in 20 queues
[2025-04-18 13:48:16] 2025-04-18 17:48:00,501 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-18 13:48:16] 2025-04-18 17:48:00,501 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-18 13:48:16] 2025-04-18 17:48:01,155 | INFO     | all payload control threads have been joined
[2025-04-18 13:48:16] 2025-04-18 17:48:01,250 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-18 13:48:16] 2025-04-18 17:48:01,250 | INFO     | aborting loop
[2025-04-18 13:48:16] 2025-04-18 17:48:01,463 | INFO     | all data control threads have been joined
[2025-04-18 13:48:16] 2025-04-18 17:48:01,504 | INFO     | [job] retrieve thread has finished
[2025-04-18 13:48:16] 2025-04-18 17:48:01,538 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-18 13:48:16] 2025-04-18 17:48:01,668 | INFO     | all job control threads have been joined
[2025-04-18 13:48:16] 2025-04-18 17:48:01,956 | INFO     | [job] validate thread has finished
[2025-04-18 13:48:16] 2025-04-18 17:48:01,957 | INFO     | [payload] validate_pre thread has finished
[2025-04-18 13:48:16] 2025-04-18 17:48:01,965 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-18 13:48:16] 2025-04-18 17:48:02,161 | INFO     | [payload] control thread has finished
[2025-04-18 13:48:16] 2025-04-18 17:48:02,162 | INFO     | [payload] validate_post thread has finished
[2025-04-18 13:48:16] 2025-04-18 17:48:02,174 | INFO     | [payload] failed_post thread has finished
[2025-04-18 13:48:16] 2025-04-18 17:48:02,256 | INFO     | [job] job monitor thread has finished
[2025-04-18 13:48:16] 2025-04-18 17:48:02,468 | INFO     | [data] control thread has finished
[2025-04-18 13:48:16] 2025-04-18 17:48:02,514 | INFO     | [data] copytool_out thread has finished
[2025-04-18 13:48:16] 2025-04-18 17:48:02,673 | INFO     | [job] control thread has finished
[2025-04-18 13:48:16] 2025-04-18 17:48:02,732 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-18 13:48:16] 2025-04-18 17:48:02,750 | INFO     | [job] create_data_payload thread has finished
[2025-04-18 13:48:16] 2025-04-18 17:48:02,766 | INFO     | [data] copytool_in thread has finished
[2025-04-18 13:48:16] 2025-04-18 17:48:02,988 | INFO     | [payload] execute_payloads thread has finished
[2025-04-18 13:48:16] 2025-04-18 17:48:03,738 | INFO     | [job] queue monitor thread has finished
[2025-04-18 13:48:16] 2025-04-18 17:48:05,546 | INFO     | [data] queue_monitor thread has finished
[2025-04-18 13:48:16] 2025-04-18 17:48:07,471 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139734468740928)>', '<ExcThread(monitor, started 139733791397632)>']
[2025-04-18 13:48:16] 2025-04-18 17:48:07,604 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-18 13:48:16] 2025-04-18 17:48:07,604 | INFO     | [monitor] control thread has ended
[2025-04-18 13:48:16] 2025-04-18 17:48:12,497 | INFO     | all workflow threads have been joined
[2025-04-18 13:48:16] 2025-04-18 17:48:12,497 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-18 13:48:16] 2025-04-18 17:48:12,497 | INFO     | traces error code: 0
[2025-04-18 13:48:16] 2025-04-18 17:48:12,498 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-18 13:48:16] 2025-04-18 17:48:13,298 [wrapper] ==== pilot stdout END ====
[2025-04-18 13:48:16] 2025-04-18 17:48:13,328 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-18 13:48:16] 2025-04-18 17:48:13,391 [wrapper] pilotpid: 33468
[2025-04-18 13:48:16] 2025-04-18 17:48:13,434 [wrapper] Pilot exit status: 0
[2025-04-18 13:48:16] 2025-04-18 17:48:13,756 [wrapper] pandaids: 6604097539
[2025-04-18 13:48:16] 2025-04-18 17:48:14,216 [wrapper] cleanup supervisor_pilot  7156 33469
[2025-04-18 13:48:16] 2025-04-18 17:48:14,387 [wrapper] Test setup, not cleaning
[2025-04-18 13:48:16] 2025-04-18 17:48:14,608 [wrapper] apfmon messages muted
[2025-04-18 13:48:16] 2025-04-18 17:48:14,662 [wrapper] ==== wrapper stdout END ====
[2025-04-18 13:48:16] 2025-04-18 17:48:14,700 [wrapper] ==== wrapper stderr END ====
[2025-04-18 13:48:16]  *** Error codes and diagnostics ***
[2025-04-18 13:48:16]     "exeErrorCode": 0,
[2025-04-18 13:48:16]     "exeErrorDiag": "",
[2025-04-18 13:48:16]     "pilotErrorCode": 0,
[2025-04-18 13:48:16]     "pilotErrorDiag": "",
[2025-04-18 13:48:16]  *** Listing of results directory ***
[2025-04-18 13:48:16] total 440248
[2025-04-18 13:48:16] -rw-r--r-- 1 boincer umatlas    495897 Apr 16 11:02 pilot3.tar.gz
[2025-04-18 13:48:16] -rwx------ 1 boincer umatlas     37140 Apr 16 11:10 runpilot2-wrapper.sh
[2025-04-18 13:48:16] -rw-r--r-- 1 boincer umatlas      5111 Apr 16 11:10 queuedata.json
[2025-04-18 13:48:16] -rw-r--r-- 1 boincer umatlas       100 Apr 16 14:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-18 13:48:16] -rwxr-xr-x 1 boincer umatlas      7986 Apr 16 14:18 run_atlas
[2025-04-18 13:48:16] -rw-r--r-- 1 boincer umatlas       105 Apr 16 14:18 job.xml
[2025-04-18 13:48:16] -rw-r--r-- 2 boincer umatlas 228063526 Apr 16 14:18 EVNT.44075481._001641.pool.root.1
[2025-04-18 13:48:16] -rw-r--r-- 2 boincer umatlas     17569 Apr 16 14:18 start_atlas.sh
[2025-04-18 13:48:16] drwxrwx--x 2 boincer umatlas      4096 Apr 16 14:18 shared
[2025-04-18 13:48:16] -rw-r--r-- 2 boincer umatlas    508891 Apr 16 14:18 input.tar.gz
[2025-04-18 13:48:16] -rw-r--r-- 1 boincer umatlas         0 Apr 16 14:18 boinc_lockfile
[2025-04-18 13:48:16] -rw-r--r-- 1 boincer umatlas      2579 Apr 16 14:18 pandaJob.out
[2025-04-18 13:48:16] -rw------- 1 boincer umatlas       467 Apr 16 14:19 setup.sh.local
[2025-04-18 13:48:16] -rw------- 1 boincer umatlas    986552 Apr 16 14:21 agis_schedconf.cvmfs.json
[2025-04-18 13:48:16] drwx------ 4 boincer umatlas      4096 Apr 16 14:21 pilot3
[2025-04-18 13:48:16] -rw-r--r-- 1 boincer umatlas      6038 Apr 18 13:40 init_data.xml
[2025-04-18 13:48:16] -rw------- 1 boincer umatlas 196631463 Apr 18 13:41 HITS.44075483._041906.pool.root.1
[2025-04-18 13:48:16] -rw-r--r-- 1 boincer umatlas       533 Apr 18 13:42 boinc_task_state.xml
[2025-04-18 13:48:16] -rw------- 1 boincer umatlas      1062 Apr 18 13:45 memory_monitor_summary.json
[2025-04-18 13:48:16] -rw------- 1 boincer umatlas   1618536 Apr 18 13:45 agis_ddmendpoints.agis.ALL.json
[2025-04-18 13:48:16] -rw------- 1 boincer umatlas   1490645 Apr 18 13:46 log.44075483._041906.job.log.tgz.1
[2025-04-18 13:48:16] -rw------- 1 boincer umatlas        95 Apr 18 13:47 pilot_heartbeat.json
[2025-04-18 13:48:16] -rw------- 1 boincer umatlas      7763 Apr 18 13:47 heartbeat.json
[2025-04-18 13:48:16] -rw-r--r-- 1 boincer umatlas      8192 Apr 18 13:48 boinc_mmap_file
[2025-04-18 13:48:16] -rw-r--r-- 1 boincer umatlas        30 Apr 18 13:48 wrapper_checkpoint.txt
[2025-04-18 13:48:16] -rw------- 1 boincer umatlas      4476 Apr 18 13:48 pilotlog.txt
[2025-04-18 13:48:16] -rw------- 1 boincer umatlas   9638186 Apr 18 13:48 log.44075483._041906.job.log.1
[2025-04-18 13:48:16] -rw------- 1 boincer umatlas       357 Apr 18 13:48 output.list
[2025-04-18 13:48:16] -rw-r--r-- 1 boincer umatlas       620 Apr 18 13:48 runtime_log
[2025-04-18 13:48:16] -rw------- 1 boincer umatlas  11151360 Apr 18 13:48 result.tar.gz
[2025-04-18 13:48:16] -rw------- 1 boincer umatlas       668 Apr 18 13:48 vFuKDmlaJP7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmBk2KDmrRmamn.diag
[2025-04-18 13:48:16] -rw-r--r-- 1 boincer umatlas     11422 Apr 18 13:48 runtime_log.err
[2025-04-18 13:48:16] -rw-r--r-- 1 boincer umatlas     21323 Apr 18 13:48 stderr.txt
[2025-04-18 13:48:16] HITS file was successfully produced:
[2025-04-18 13:48:16] -rw------- 1 boincer umatlas 196631463 Apr 18 13:41 shared/HITS.pool.root.1
[2025-04-18 13:48:16]  *** Contents of shared directory: ***
[2025-04-18 13:48:16] total 426160
[2025-04-18 13:48:16] -rw-r--r-- 2 boincer umatlas 228063526 Apr 16 14:18 ATLAS.root_0
[2025-04-18 13:48:16] -rw-r--r-- 2 boincer umatlas     17569 Apr 16 14:18 start_atlas.sh
[2025-04-18 13:48:16] -rw-r--r-- 2 boincer umatlas    508891 Apr 16 14:18 input.tar.gz
[2025-04-18 13:48:16] -rw------- 1 boincer umatlas 196631463 Apr 18 13:41 HITS.pool.root.1
[2025-04-18 13:48:16] -rw------- 1 boincer umatlas  11151360 Apr 18 13:48 result.tar.gz
13:48:18 (24452): run_atlas exited; CPU time 104809.824123
13:48:18 (24452): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN