Stderr output

<core_client_version>7.24.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-17 15:13:26 (86510): Detected: vboxwrapper 26206
2025-04-17 15:13:26 (86510): Detected: BOINC client v7.24.4
2025-04-17 15:13:26 (86510): Detected: VirtualBox VboxManage Interface (Version: 7.1.0)
2025-04-17 15:13:26 (86510): Detected: Sandbox Configuration Enabled
2025-04-17 15:13:26 (86510): Successfully copied 'init_data.xml' to the shared directory.
2025-04-17 15:13:26 (86510): Create VM. (boinc_4ac29c043cade025, slot#0)
2025-04-17 15:13:27 (86510): Setting Memory Size for VM. (4800MB)
2025-04-17 15:13:27 (86510): Setting CPU Count for VM. (8)
2025-04-17 15:13:27 (86510): Setting Chipset Options for VM.
2025-04-17 15:13:27 (86510): Setting Graphics Controller Options for VM.
2025-04-17 15:13:27 (86510): Setting Boot Options for VM.
2025-04-17 15:13:27 (86510): Setting Network Configuration for NAT.
2025-04-17 15:13:27 (86510): Enabling VM Network Access.
2025-04-17 15:13:27 (86510): Disabling USB Support for VM.
2025-04-17 15:13:27 (86510): Disabling COM Port Support for VM.
2025-04-17 15:13:27 (86510): Disabling Audio Support for VM.
2025-04-17 15:13:28 (86510): Disabling Clipboard Support for VM.
2025-04-17 15:13:28 (86510): Disabling Drag and Drop Support for VM.
2025-04-17 15:13:28 (86510): Adding storage controller(s) to VM.
2025-04-17 15:13:28 (86510): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-17 15:13:30 (86510): Adding VirtualBox Guest Additions to VM.
2025-04-17 15:13:30 (86510): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-17 15:13:30 (86510): forwarding host port 49218 to guest port 80
2025-04-17 15:13:30 (86510): Enabling remote desktop for VM.
2025-04-17 15:13:30 (86510): Required extension pack not installed, remote desktop not enabled.
2025-04-17 15:13:30 (86510): Enabling shared directory for VM.
2025-04-17 15:13:30 (86510): Starting VM using VBoxManage interface. (boinc_4ac29c043cade025, slot#0)
2025-04-17 15:13:36 (86510): Successfully started VM. (PID = '86582')
2025-04-17 15:13:36 (86510): Reporting VM Process ID to BOINC.
2025-04-17 15:13:36 (86510): Guest Log: BIOS: VirtualBox 7.1.0
2025-04-17 15:13:36 (86510): Guest Log: CPUID EDX: 0x178bfbff
2025-04-17 15:13:36 (86510): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-17 15:13:36 (86510): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-17 15:13:36 (86510): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-17 15:13:36 (86510): Detected: Web Application Enabled (http://localhost:49218)
2025-04-17 15:13:36 (86510): Preference change detected
2025-04-17 15:13:36 (86510): Setting CPU throttle for VM. (40%)
2025-04-17 15:13:37 (86510): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-17 15:13:39 (86510): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-17 15:13:39 (86510): Guest Log: BIOS: Booting from Hard Disk...
2025-04-17 15:13:41 (86510): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-17 15:13:41 (86510): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-17 15:13:41 (86510): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-17 15:13:41 (86510): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-17 15:13:41 (86510): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-17 15:13:41 (86510): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-17 15:13:41 (86510): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-17 15:13:41 (86510): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-17 15:13:41 (86510): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-17 15:13:41 (86510): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-17 15:13:41 (86510): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-17 15:13:41 (86510): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-17 15:13:41 (86510): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-17 15:13:41 (86510): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-17 15:13:41 (86510): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-17 15:13:41 (86510): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-17 15:13:41 (86510): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-17 15:13:41 (86510): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-17 15:13:41 (86510): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-17 15:13:41 (86510): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-17 15:13:41 (86510): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-17 15:13:41 (86510): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-17 15:13:41 (86510): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-17 15:13:41 (86510): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-17 15:13:41 (86510): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-17 15:13:41 (86510): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-17 15:13:41 (86510): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-17 15:13:41 (86510): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-17 15:13:41 (86510): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-17 15:13:41 (86510): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-17 15:13:41 (86510): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-17 15:13:41 (86510): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-17 15:14:00 (86510): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-17 15:14:00 (86510): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-17 15:14:34 (86510): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-17 15:14:34 (86510): Guest Log: 00:00:00.000200 main     Log opened 2025-04-17T06:14:32.081484000Z
2025-04-17 15:14:34 (86510): Guest Log: 00:00:00.000361 main     OS Product: Linux
2025-04-17 15:14:34 (86510): Guest Log: 00:00:00.000436 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-17 15:14:34 (86510): Guest Log: 00:00:00.000504 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-17 15:14:34 (86510): Guest Log: 00:00:00.000575 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-17 15:14:34 (86510): Guest Log: 00:00:00.000577 main     Process ID: 1387
2025-04-17 15:14:34 (86510): Guest Log: 00:00:00.000578 main     Package type: LINUX_64BITS_GENERIC
2025-04-17 15:14:34 (86510): Guest Log: 00:00:00.004112 main     5.2.32 r132073 started. Verbose level = 0
2025-04-17 15:14:35 (86510): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-17 15:14:35 (86510): Guest Log: [INFO] Mounting shared directory
2025-04-17 15:14:35 (86510): Guest Log: [INFO] Checking for init_data.xml
2025-04-17 15:14:52 (86510): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-17 15:14:52 (86510): Guest Log: [INFO] Detected branch: prod
2025-04-17 15:14:52 (86510): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-17 15:14:52 (86510): Guest Log: Copying input files
2025-04-17 15:15:07 (86510): Guest Log: Copied input files into RunAtlas.
2025-04-17 15:15:07 (86510): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-17 15:15:07 (86510): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-17 15:15:07 (86510): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-17 15:15:07 (86510): Guest Log: Further information can be found at the LHC@home message board.
2025-04-17 15:15:19 (86510): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-17 15:15:20 (86510): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-17 15:15:20 (86510): Guest Log: 2.6.3.0 1668 0 32160 144952 4 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-17 15:15:23 (86510): Guest Log: copied the webapp to /var/www
2025-04-17 15:15:24 (86510): Guest Log: ATHENA_PROC_NUMBER=8
2025-04-17 15:15:24 (86510): Guest Log: ATHENA_CORE_NUMBER=8
2025-04-17 15:15:24 (86510): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-17 15:15:24 (86510): Guest Log:  *** Starting ATLAS job. (PandaID=6603899789 taskID=44075483) ***
2025-04-17 16:53:36 (86510): Status Report: Elapsed Time: '6000.000000'
2025-04-17 16:53:36 (86510): Status Report: CPU Time: '22840.040000'
2025-04-17 18:33:36 (86510): Status Report: Elapsed Time: '12000.000000'
2025-04-17 18:33:36 (86510): Status Report: CPU Time: '52074.280000'
2025-04-17 20:13:36 (86510): Status Report: Elapsed Time: '18000.000000'
2025-04-17 20:13:36 (86510): Status Report: CPU Time: '80299.530000'
2025-04-17 21:53:36 (86510): Status Report: Elapsed Time: '24000.000000'
2025-04-17 21:53:36 (86510): Status Report: CPU Time: '107306.890000'
2025-04-17 22:21:55 (86510): Guest Log:  *** Job finished ***
2025-04-17 22:21:55 (86510): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-17 22:21:55 (86510): Guest Log: 2025-04-17 13:21:18,019 | INFO     | [job] create_data_payload thread has finished
2025-04-17 22:21:55 (86510): Guest Log: 2025-04-17 13:21:18,767 | INFO     | [job] queue monitor thread has finished
2025-04-17 22:21:55 (86510): Guest Log: 2025-04-17 13:21:19,883 | INFO     | [data] queue_monitor thread has finished
2025-04-17 22:21:55 (86510): Guest Log: 2025-04-17 13:21:20,490 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140302713526080)>', '<ExcThread(monitor, started 140302102796032)>']
2025-04-17 22:21:55 (86510): Guest Log: 2025-04-17 13:21:20,775 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-17 22:21:55 (86510): Guest Log: 2025-04-17 13:21:20,775 | INFO     | [monitor] control thread has ended
2025-04-17 22:21:55 (86510): Guest Log: 2025-04-17 13:21:25,534 | INFO     | all workflow threads have been joined
2025-04-17 22:21:55 (86510): Guest Log: 2025-04-17 13:21:25,534 | INFO     | end of generic workflow (traces error code: 0)
2025-04-17 22:21:55 (86510): Guest Log: 2025-04-17 13:21:25,534 | INFO     | traces error code: 0
2025-04-17 22:21:55 (86510): Guest Log: 2025-04-17 13:21:25,535 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-17 22:21:55 (86510): Guest Log: 2025-04-17 13:21:25,950 [wrapper] ==== pilot stdout END ====
2025-04-17 22:21:55 (86510): Guest Log: 2025-04-17 13:21:26,174 [wrapper] ==== wrapper stdout RESUME ====
2025-04-17 22:21:55 (86510): Guest Log: 2025-04-17 13:21:26,419 [wrapper] pilotpid: 6042
2025-04-17 22:21:55 (86510): Guest Log: 2025-04-17 13:21:26,534 [wrapper] Pilot exit status: 0
2025-04-17 22:21:55 (86510): Guest Log: 2025-04-17 13:21:27,645 [wrapper] pandaids: 6603899789
2025-04-17 22:21:55 (86510): Guest Log: 2025-04-17 13:21:28,890 [wrapper] cleanup supervisor_pilot 17058 6043
2025-04-17 22:21:55 (86510): Guest Log: 2025-04-17 13:21:28,918 [wrapper] Test setup, not cleaning
2025-04-17 22:21:55 (86510): Guest Log: 2025-04-17 13:21:29,131 [wrapper] apfmon messages muted
2025-04-17 22:21:55 (86510): Guest Log: 2025-04-17 13:21:29,251 [wrapper] ==== wrapper stdout END ====
2025-04-17 22:21:55 (86510): Guest Log: 2025-04-17 13:21:29,453 [wrapper] ==== wrapper stderr END ====
2025-04-17 22:21:55 (86510): Guest Log:  *** Error codes and diagnostics ***
2025-04-17 22:21:55 (86510): Guest Log:     "exeErrorCode": 0,
2025-04-17 22:21:55 (86510): Guest Log:     "exeErrorDiag": "",
2025-04-17 22:21:55 (86510): Guest Log:     "pilotErrorCode": 0,
2025-04-17 22:21:55 (86510): Guest Log:     "pilotErrorDiag": "",
2025-04-17 22:21:55 (86510): Guest Log:  *** Listing of results directory ***
2025-04-17 22:21:55 (86510): Guest Log: total 208756
2025-04-17 22:21:55 (86510): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 16 10:02 runpilot2-wrapper.sh
2025-04-17 22:21:55 (86510): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 16 10:02 queuedata.json
2025-04-17 22:21:55 (86510): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 16 10:02 pilot3.tar.gz
2025-04-17 22:21:55 (86510): Guest Log: -rw-r-----. 1 atlas atlas     17569 Apr 17 06:14 start_atlas.sh
2025-04-17 22:21:55 (86510): Guest Log: -rw-r-----. 1 atlas atlas    508881 Apr 17 06:14 input.tar.gz
2025-04-17 22:21:55 (86510): Guest Log: -rw-r--r--. 1 atlas atlas      7896 Apr 17 06:14 init_data.xml
2025-04-17 22:21:55 (86510): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 17 06:15 EVNT.44075481._001533.pool.root.1 -> /data/./ATLAS.root_0
2025-04-17 22:21:55 (86510): Guest Log: -rw-r--r--. 1 atlas atlas      2579 Apr 17 06:15 pandaJob.out
2025-04-17 22:21:55 (86510): Guest Log: -rw-------. 1 atlas atlas       424 Apr 17 06:15 setup.sh.local
2025-04-17 22:21:55 (86510): Guest Log: -rw-------. 1 atlas atlas    986440 Apr 17 06:17 agis_schedconf.cvmfs.json
2025-04-17 22:21:55 (86510): Guest Log: drwx------. 4 atlas atlas      4096 Apr 17 06:17 pilot3
2025-04-17 22:21:55 (86510): Guest Log: -rw-------. 1 atlas atlas 207123605 Apr 17 13:14 HITS.44075483._039083.pool.root.1
2025-04-17 22:21:55 (86510): Guest Log: -rw-------. 1 atlas atlas      1036 Apr 17 13:16 memory_monitor_summary.json
2025-04-17 22:21:55 (86510): Guest Log: -rw-------. 1 atlas atlas   1618536 Apr 17 13:17 agis_ddmendpoints.agis.ALL.json
2025-04-17 22:21:55 (86510): Guest Log: -rw-------. 1 atlas atlas    386821 Apr 17 13:17 log.44075483._039083.job.log.tgz.1
2025-04-17 22:21:55 (86510): Guest Log: -rw-------. 1 atlas atlas        95 Apr 17 13:20 pilot_heartbeat.json
2025-04-17 22:21:55 (86510): Guest Log: -rw-------. 1 atlas atlas      7709 Apr 17 13:21 heartbeat.json
2025-04-17 22:21:55 (86510): Guest Log: -rw-------. 1 atlas atlas      4413 Apr 17 13:21 pilotlog.txt
2025-04-17 22:21:55 (86510): Guest Log: -rw-------. 1 atlas atlas   1038502 Apr 17 13:21 log.44075483._039083.job.log.1
2025-04-17 22:21:55 (86510): Guest Log: -rw-------. 1 atlas atlas       357 Apr 17 13:21 output.list
2025-04-17 22:21:55 (86510): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 17 13:21 runtime_log
2025-04-17 22:21:55 (86510): Guest Log: -rw-------. 1 atlas atlas   1443840 Apr 17 13:21 result.tar.gz
2025-04-17 22:21:55 (86510): Guest Log: -rw-r--r--. 1 atlas atlas     10962 Apr 17 13:21 runtime_log.err
2025-04-17 22:21:55 (86510): Guest Log: -rw-------. 1 atlas atlas       671 Apr 17 13:21 MwhLDm2lEP7n9Rq4apOajLDm4fhM0noT9bVoFjIUDm4R2KDmmtrURn.diag
2025-04-17 22:21:56 (86510): Guest Log: Looking for outputfile HITS.44075483._039083.pool.root.1
2025-04-17 22:21:56 (86510): Guest Log: HITS file was successfully produced
2025-04-17 22:21:56 (86510): Guest Log: -rw-------. 1 atlas atlas 207123605 Apr 17 13:14 /home/atlas/RunAtlas/HITS.44075483._039083.pool.root.1
2025-04-17 22:21:57 (86510): Guest Log: Successfully finished the ATLAS job!
2025-04-17 22:21:57 (86510): Guest Log: Copying the results back to the shared directory!
2025-04-17 22:21:58 (86510): Guest Log:  *** Contents of shared directory: ***
2025-04-17 22:21:59 (86510): Guest Log: total 237524
2025-04-17 22:21:59 (86510): Guest Log: -rw-rw----. 1 root root 225204940 Apr 17 06:13 ATLAS.root_0
2025-04-17 22:21:59 (86510): Guest Log: -rw-rw-r--. 1 root root      7896 Apr 17 06:13 init_data.xml
2025-04-17 22:21:59 (86510): Guest Log: -rw-rw----. 1 root root    508881 Apr 17 06:13 input.tar.gz
2025-04-17 22:21:59 (86510): Guest Log: -rw-r--r--. 1 root root   1443840 Apr 17  2025 result.tar.gz
2025-04-17 22:21:59 (86510): Guest Log: -rw-rw----. 1 root root     17569 Apr 17 06:13 start_atlas.sh
2025-04-17 22:21:59 (86510): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-17 22:21:59 (86510): VM Completion File Detected.
2025-04-17 22:21:59 (86510): Powering off VM.
2025-04-17 22:22:00 (86510): Successfully stopped VM.
2025-04-17 22:22:00 (86510): Deregistering VM. (boinc_4ac29c043cade025, slot#0)
2025-04-17 22:22:01 (86510): Removing network bandwidth throttle group from VM.
2025-04-17 22:22:01 (86510): Removing VM from VirtualBox.
22:22:06 (86510): called boinc_finish(0)

</stderr_txt>
]]>

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