Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
18:17:21 (3083196): wrapper (7.7.26015): starting
18:17:21 (3083196): wrapper: running run_atlas (--nthreads 12)
[2025-04-16 18:17:21] Arguments: --nthreads 12
[2025-04-16 18:17:21] Threads: 12
[2025-04-16 18:17:21] Checking for CVMFS
[2025-04-16 18:17:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-16 18:17:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-16 18:17:21] Running cvmfs_config stat atlas.cern.ch
[2025-04-16 18:17:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-16 18:17:21] 2.12.6.0 4038419 8019 122332 144935 2 185 3769555 4096000 11687 130560 0 70070643 99.983 2233190 380 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.230:3128 1
[2025-04-16 18:17:21] CVMFS is ok
[2025-04-16 18:17:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-16 18:17:21] Checking for apptainer binary...
[2025-04-16 18:17:21] apptainer is not installed, using version from CVMFS
[2025-04-16 18:17:21] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-16 18:17:22] epyc7v12
[2025-04-16 18:17:22] apptainer works
[2025-04-16 18:17:22] Set ATHENA_PROC_NUMBER=12
[2025-04-16 18:17:22] Set ATHENA_CORE_NUMBER=12
[2025-04-16 18:17:22] Starting ATLAS job with PandaID=6603700769
[2025-04-16 18:17:22] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-16 20:28:50]  *** The last 200 lines of the pilot log: ***
[2025-04-16 20:28:50] 2025-04-16 20:28:31,380 | INFO     | extracted standard memory fields from prmon json
[2025-04-16 20:28:50] 2025-04-16 20:28:31,380 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-16 20:28:50] 2025-04-16 20:28:31,380 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-16 20:28:50] 2025-04-16 20:28:31,381 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-16 20:28:50] 2025-04-16 20:28:31,384 | INFO     | fitting pss+swap vs Time
[2025-04-16 20:28:50] 2025-04-16 20:28:31,384 | INFO     | sum of square deviations: 665612480.0
[2025-04-16 20:28:50] 2025-04-16 20:28:31,385 | INFO     | sum of deviations: 70574085603.00002
[2025-04-16 20:28:50] 2025-04-16 20:28:31,385 | INFO     | mean x: 1744831385.0
[2025-04-16 20:28:50] 2025-04-16 20:28:31,385 | INFO     | mean y: 2467583.914728682
[2025-04-16 20:28:50] 2025-04-16 20:28:31,385 | INFO     | -- intersect: -184999892239.31317
[2025-04-16 20:28:50] 2025-04-16 20:28:31,385 | INFO     | intersect: -184999892239.31317
[2025-04-16 20:28:50] 2025-04-16 20:28:31,385 | INFO     | chi2: 5.763118931658067
[2025-04-16 20:28:50] 2025-04-16 20:28:31,385 | INFO     | sum of square deviations: 591173875.0
[2025-04-16 20:28:50] 2025-04-16 20:28:31,386 | INFO     | sum of deviations: 76528265194.50002
[2025-04-16 20:28:50] 2025-04-16 20:28:31,386 | INFO     | mean x: 1744831232.5
[2025-04-16 20:28:50] 2025-04-16 20:28:31,386 | INFO     | mean y: 2479171.669354839
[2025-04-16 20:28:50] 2025-04-16 20:28:31,386 | INFO     | -- intersect: -225868305934.33066
[2025-04-16 20:28:50] 2025-04-16 20:28:31,386 | INFO     | intersect: -225868305934.33066
[2025-04-16 20:28:50] 2025-04-16 20:28:31,387 | INFO     | chi2: 4.899204786621438
[2025-04-16 20:28:50] 2025-04-16 20:28:31,387 | INFO     | current chi2=4.899204786621438 (change=14.990392446891212 %)
[2025-04-16 20:28:50] 2025-04-16 20:28:31,387 | INFO     | right removable region: 123
[2025-04-16 20:28:50] 2025-04-16 20:28:31,387 | INFO     | sum of square deviations: 591173875.0
[2025-04-16 20:28:50] 2025-04-16 20:28:31,387 | INFO     | sum of deviations: 36247954146.50001
[2025-04-16 20:28:50] 2025-04-16 20:28:31,388 | INFO     | mean x: 1744831537.5
[2025-04-16 20:28:50] 2025-04-16 20:28:31,388 | INFO     | mean y: 2537668.8467741935
[2025-04-16 20:28:50] 2025-04-16 20:28:31,388 | INFO     | -- intersect: -106982185843.6175
[2025-04-16 20:28:50] 2025-04-16 20:28:31,388 | INFO     | intersect: -106982185843.6175
[2025-04-16 20:28:50] 2025-04-16 20:28:31,388 | INFO     | chi2: 3.0245245623080583
[2025-04-16 20:28:50] 2025-04-16 20:28:31,388 | INFO     | current chi2=3.0245245623080583 (change=47.51931032181747 %)
[2025-04-16 20:28:50] 2025-04-16 20:28:31,388 | INFO     | sum of square deviations: 522502820.0
[2025-04-16 20:28:50] 2025-04-16 20:28:31,389 | INFO     | sum of deviations: 7434141126.0
[2025-04-16 20:28:50] 2025-04-16 20:28:31,389 | INFO     | mean x: 1744831690.0
[2025-04-16 20:28:50] 2025-04-16 20:28:31,389 | INFO     | mean y: 2601684.336134454
[2025-04-16 20:28:50] 2025-04-16 20:28:31,389 | INFO     | -- intersect: -24822766769.32519
[2025-04-16 20:28:50] 2025-04-16 20:28:31,389 | INFO     | intersect: -24822766769.32519
[2025-04-16 20:28:50] 2025-04-16 20:28:31,389 | INFO     | chi2: 1.2309144400795062
[2025-04-16 20:28:50] 2025-04-16 20:28:31,389 | INFO     | current chi2=1.2309144400795062 (change=59.30221710151437 %)
[2025-04-16 20:28:50] 2025-04-16 20:28:31,390 | INFO     | sum of square deviations: 459366752.5
[2025-04-16 20:28:50] 2025-04-16 20:28:31,390 | INFO     | sum of deviations: -3781417480.499999
[2025-04-16 20:28:50] 2025-04-16 20:28:31,390 | INFO     | mean x: 1744831842.5
[2025-04-16 20:28:50] 2025-04-16 20:28:31,390 | INFO     | mean y: 2628623.6578947366
[2025-04-16 20:28:50] 2025-04-16 20:28:31,390 | INFO     | -- intersect: 14365743920.650402
[2025-04-16 20:28:50] 2025-04-16 20:28:31,390 | INFO     | intersect: 14365743920.650402
[2025-04-16 20:28:50] 2025-04-16 20:28:31,391 | INFO     | chi2: 0.9483904415296524
[2025-04-16 20:28:50] 2025-04-16 20:28:31,391 | INFO     | current chi2=0.9483904415296524 (change=22.952366903064792 %)
[2025-04-16 20:28:50] 2025-04-16 20:28:31,391 | INFO     | left removable region: 30
[2025-04-16 20:28:50] 2025-04-16 20:28:31,391 | INFO     | sum of square deviations: 249388862.0
[2025-04-16 20:28:50] 2025-04-16 20:28:31,391 | INFO     | sum of deviations: -304805410.0
[2025-04-16 20:28:50] 2025-04-16 20:28:31,391 | INFO     | mean x: 1744832117.0
[2025-04-16 20:28:50] 2025-04-16 20:28:31,391 | INFO     | mean y: 2662255.301075269
[2025-04-16 20:28:50] 2025-04-16 20:28:31,392 | INFO     | -- intersect: 2135212460.3834217
[2025-04-16 20:28:50] 2025-04-16 20:28:31,392 | INFO     | intersect: 2135212460.3834217
[2025-04-16 20:28:50] 2025-04-16 20:28:31,392 | INFO     | chi2: 0.001171266883408046
[2025-04-16 20:28:50] 2025-04-16 20:28:31,392 | INFO     | -- intersect: 2135212460.3834217
[2025-04-16 20:28:50] 2025-04-16 20:28:31,392 | INFO     | current memory leak: -1.22 B/s (using 93 data points, chi2=0.00)
[2025-04-16 20:28:50] 2025-04-16 20:28:31,392 | INFO     | ..............................
[2025-04-16 20:28:50] 2025-04-16 20:28:31,392 | INFO     | . Timing measurements:
[2025-04-16 20:28:50] 2025-04-16 20:28:31,393 | INFO     | . get job = 0 s
[2025-04-16 20:28:50] 2025-04-16 20:28:31,393 | INFO     | . initial setup = 1 s
[2025-04-16 20:28:50] 2025-04-16 20:28:31,393 | INFO     | . payload setup = 6 s
[2025-04-16 20:28:50] 2025-04-16 20:28:31,393 | INFO     | . stage-in = 0 s
[2025-04-16 20:28:50] 2025-04-16 20:28:31,393 | INFO     | . payload execution = 7822 s
[2025-04-16 20:28:50] 2025-04-16 20:28:31,393 | INFO     | . stage-out = 0 s
[2025-04-16 20:28:50] 2025-04-16 20:28:31,393 | INFO     | . log creation = 0 s
[2025-04-16 20:28:50] 2025-04-16 20:28:31,393 | INFO     | ..............................
[2025-04-16 20:28:50] 2025-04-16 20:28:31,447 | INFO     | 
[2025-04-16 20:28:50] 2025-04-16 20:28:31,447 | INFO     | job summary report
[2025-04-16 20:28:50] 2025-04-16 20:28:31,447 | INFO     | --------------------------------------------------
[2025-04-16 20:28:50] 2025-04-16 20:28:31,447 | INFO     | PanDA job id: 6603700769
[2025-04-16 20:28:50] 2025-04-16 20:28:31,447 | INFO     | task id: 44075483
[2025-04-16 20:28:50] 2025-04-16 20:28:31,448 | INFO     | errors: (none)
[2025-04-16 20:28:50] 2025-04-16 20:28:31,448 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-16 20:28:50] 2025-04-16 20:28:31,448 | INFO     | pilot state: finished 
[2025-04-16 20:28:50] 2025-04-16 20:28:31,448 | INFO     | transexitcode: 0
[2025-04-16 20:28:50] 2025-04-16 20:28:31,448 | INFO     | exeerrorcode: 0
[2025-04-16 20:28:50] 2025-04-16 20:28:31,448 | INFO     | exeerrordiag: 
[2025-04-16 20:28:50] 2025-04-16 20:28:31,448 | INFO     | exitcode: 0
[2025-04-16 20:28:50] 2025-04-16 20:28:31,448 | INFO     | exitmsg: OK
[2025-04-16 20:28:50] 2025-04-16 20:28:31,448 | INFO     | cpuconsumptiontime: 45304 s
[2025-04-16 20:28:50] 2025-04-16 20:28:31,448 | INFO     | nevents: 400
[2025-04-16 20:28:50] 2025-04-16 20:28:31,448 | INFO     | neventsw: 0
[2025-04-16 20:28:50] 2025-04-16 20:28:31,449 | INFO     | pid: 3125336
[2025-04-16 20:28:50] 2025-04-16 20:28:31,449 | INFO     | pgrp: 3125336
[2025-04-16 20:28:50] 2025-04-16 20:28:31,449 | INFO     | corecount: 12
[2025-04-16 20:28:50] 2025-04-16 20:28:31,449 | INFO     | event service: False
[2025-04-16 20:28:50] 2025-04-16 20:28:31,449 | INFO     | sizes: {0: 2417390, 5: 2417596, 11: 2417652, 7832: 2445314, 7834: 2454303, 7836: 2454387, 7842: 2454685}
[2025-04-16 20:28:50] 2025-04-16 20:28:31,449 | INFO     | --------------------------------------------------
[2025-04-16 20:28:50] 2025-04-16 20:28:31,449 | INFO     | 
[2025-04-16 20:28:50] 2025-04-16 20:28:31,449 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/12
[2025-04-16 20:28:50] 2025-04-16 20:28:31,470 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-16 20:28:50] 2025-04-16 20:28:31,470 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-16 20:28:50] 2025-04-16 20:28:31,470 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-16 20:28:50] 2025-04-16 20:28:31,470 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-16 20:28:50] 2025-04-16 20:28:31,470 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-16 20:28:50] 2025-04-16 20:28:31,470 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-16 20:28:50] 2025-04-16 20:28:31,470 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-16 20:28:50] 2025-04-16 20:28:31,471 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-16 20:28:50] 2025-04-16 20:28:31,471 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-16 20:28:50] 2025-04-16 20:28:31,471 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-16 20:28:50] 2025-04-16 20:28:31,471 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-16 20:28:50] 2025-04-16 20:28:31,471 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-16 20:28:50] 2025-04-16 20:28:31,471 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-16 20:28:50] 2025-04-16 20:28:31,471 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-16 20:28:50] 2025-04-16 20:28:31,471 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-16 20:28:50] 2025-04-16 20:28:31,471 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-16 20:28:50] 2025-04-16 20:28:31,471 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-16 20:28:50] 2025-04-16 20:28:31,472 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-16 20:28:50] 2025-04-16 20:28:31,472 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-16 20:28:50] 2025-04-16 20:28:31,472 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-16 20:28:50] 2025-04-16 20:28:31,472 | INFO     | job 6603700769 has completed (purged errors)
[2025-04-16 20:28:50] 2025-04-16 20:28:31,472 | INFO     | overall cleanup function is called
[2025-04-16 20:28:50] 2025-04-16 20:28:32,479 | INFO     | --- collectZombieJob: --- 10, [3125336]
[2025-04-16 20:28:50] 2025-04-16 20:28:32,479 | INFO     | zombie collector waiting for pid 3125336
[2025-04-16 20:28:50] 2025-04-16 20:28:32,479 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-16 20:28:50] 2025-04-16 20:28:32,479 | INFO     | collected zombie processes
[2025-04-16 20:28:50] 2025-04-16 20:28:32,479 | INFO     | will attempt to kill all subprocesses of pid=3125336
[2025-04-16 20:28:50] 2025-04-16 20:28:32,774 | INFO     | process IDs to be killed: [3125336] (in reverse order)
[2025-04-16 20:28:50] 2025-04-16 20:28:32,901 | WARNING  | found no corresponding commands to process id(s)
[2025-04-16 20:28:50] 2025-04-16 20:28:32,901 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-16 20:28:50] 2025-04-16 20:28:32,915 | INFO     | did not find any defunct processes belonging to 3125336
[2025-04-16 20:28:50] 2025-04-16 20:28:32,923 | INFO     | did not find any defunct processes belonging to 3125336
[2025-04-16 20:28:50] 2025-04-16 20:28:32,923 | INFO     | ready for new job
[2025-04-16 20:28:50] 2025-04-16 20:28:32,923 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-16 20:28:50] 2025-04-16 20:28:32,924 | INFO     | **************************************
[2025-04-16 20:28:50] 2025-04-16 20:28:32,924 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-16 20:28:50] 2025-04-16 20:28:32,924 | INFO     | **************************************
[2025-04-16 20:28:50] 2025-04-16 20:28:32,924 | INFO     | 
[2025-04-16 20:28:50] 2025-04-16 20:28:32,952 | INFO     | architecture information:
[2025-04-16 20:28:50] 2025-04-16 20:28:32,952 | INFO     | executing command: cat /etc/os-release
[2025-04-16 20:28:50] 2025-04-16 20:28:32,969 | INFO     | cat /etc/os-release:
[2025-04-16 20:28:50] NAME="CentOS Linux"
[2025-04-16 20:28:50] VERSION="7 (Core)"
[2025-04-16 20:28:50] ID="centos"
[2025-04-16 20:28:50] ID_LIKE="rhel fedora"
[2025-04-16 20:28:50] VERSION_ID="7"
[2025-04-16 20:28:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-16 20:28:50] ANSI_COLOR="0;31"
[2025-04-16 20:28:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-16 20:28:50] HOME_URL="https://www.centos.org/"
[2025-04-16 20:28:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-16 20:28:50] 
[2025-04-16 20:28:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-16 20:28:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-16 20:28:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-16 20:28:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-16 20:28:50] 
[2025-04-16 20:28:50] 2025-04-16 20:28:32,970 | INFO     | **************************************
[2025-04-16 20:28:50] 2025-04-16 20:28:33,473 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/12
[2025-04-16 20:28:50] 2025-04-16 20:28:33,493 | INFO     | sufficient remaining disk space (319293489152 B)
[2025-04-16 20:28:50] 2025-04-16 20:28:33,493 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-16 20:28:50] 2025-04-16 20:28:33,493 | INFO     | current server update state: UPDATING_FINAL
[2025-04-16 20:28:50] 2025-04-16 20:28:33,493 | INFO     | update_server=False
[2025-04-16 20:28:50] 2025-04-16 20:28:33,494 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-16 20:28:50] 2025-04-16 20:28:33,829 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-16 20:28:50] 2025-04-16 20:28:33,934 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-04-16 20:28:50] 2025-04-16 20:28:33,934 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-04-16 20:28:50] 2025-04-16 20:28:33,934 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-16 20:28:50] 2025-04-16 20:28:33,934 | INFO     | will abort loop
[2025-04-16 20:28:50] 2025-04-16 20:28:33,955 | INFO     | found 0 job(s) in 20 queues
[2025-04-16 20:28:50] 2025-04-16 20:28:33,955 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-16 20:28:50] 2025-04-16 20:28:33,955 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-16 20:28:50] 2025-04-16 20:28:34,299 | INFO     | all data control threads have been joined
[2025-04-16 20:28:50] 2025-04-16 20:28:34,318 | INFO     | all job control threads have been joined
[2025-04-16 20:28:50] 2025-04-16 20:28:34,499 | INFO     | [job] retrieve thread has finished
[2025-04-16 20:28:50] 2025-04-16 20:28:34,516 | INFO     | [data] copytool_in thread has finished
[2025-04-16 20:28:50] 2025-04-16 20:28:34,524 | INFO     | [payload] execute_payloads thread has finished
[2025-04-16 20:28:50] 2025-04-16 20:28:34,543 | INFO     | all payload control threads have been joined
[2025-04-16 20:28:50] 2025-04-16 20:28:34,922 | INFO     | [payload] validate_pre thread has finished
[2025-04-16 20:28:50] 2025-04-16 20:28:34,939 | INFO     | [job] job monitor thread has finished
[2025-04-16 20:28:50] 2025-04-16 20:28:35,303 | INFO     | [data] control thread has finished
[2025-04-16 20:28:50] 2025-04-16 20:28:35,324 | INFO     | [job] control thread has finished
[2025-04-16 20:28:50] 2025-04-16 20:28:35,399 | INFO     | [payload] validate_post thread has finished
[2025-04-16 20:28:50] 2025-04-16 20:28:35,490 | INFO     | [payload] failed_post thread has finished
[2025-04-16 20:28:50] 2025-04-16 20:28:35,547 | INFO     | [payload] control thread has finished
[2025-04-16 20:28:50] 2025-04-16 20:28:35,616 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-16 20:28:50] 2025-04-16 20:28:35,834 | INFO     | [data] copytool_out thread has finished
[2025-04-16 20:28:50] 2025-04-16 20:28:35,839 | INFO     | [job] create_data_payload thread has finished
[2025-04-16 20:28:50] 2025-04-16 20:28:35,947 | INFO     | [job] validate thread has finished
[2025-04-16 20:28:50] 2025-04-16 20:28:36,455 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-16 20:28:50] 2025-04-16 20:28:37,459 | INFO     | [job] queue monitor thread has finished
[2025-04-16 20:28:50] 2025-04-16 20:28:39,619 | INFO     | [data] queue_monitor thread has finished
[2025-04-16 20:28:50] 2025-04-16 20:28:44,215 | INFO     | job.realtimelogging is not enabled
[2025-04-16 20:28:50] 2025-04-16 20:28:45,220 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-16 20:28:50] 2025-04-16 20:28:45,295 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140606053271360)>', '<ExcThread(monitor, started 140605334214400)>']
[2025-04-16 20:28:50] 2025-04-16 20:28:46,003 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-16 20:28:50] 2025-04-16 20:28:46,003 | INFO     | [monitor] control thread has ended
[2025-04-16 20:28:50] 2025-04-16 20:28:50,320 | INFO     | all workflow threads have been joined
[2025-04-16 20:28:50] 2025-04-16 20:28:50,321 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-16 20:28:50] 2025-04-16 20:28:50,321 | INFO     | traces error code: 0
[2025-04-16 20:28:50] 2025-04-16 20:28:50,321 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-16 20:28:50] 2025-04-16 20:28:50,403 [wrapper] ==== pilot stdout END ====
[2025-04-16 20:28:50] 2025-04-16 20:28:50,407 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-16 20:28:50] 2025-04-16 20:28:50,411 [wrapper] pilotpid: 3095640
[2025-04-16 20:28:50] 2025-04-16 20:28:50,415 [wrapper] Pilot exit status: 0
[2025-04-16 20:28:50] 2025-04-16 20:28:50,428 [wrapper] pandaids: 6603700769
[2025-04-16 20:28:50] 2025-04-16 20:28:50,506 [wrapper] cleanup supervisor_pilot 3314382 3095641
[2025-04-16 20:28:50] 2025-04-16 20:28:50,511 [wrapper] Test setup, not cleaning
[2025-04-16 20:28:50] 2025-04-16 20:28:50,515 [wrapper] apfmon messages muted
[2025-04-16 20:28:50] 2025-04-16 20:28:50,518 [wrapper] ==== wrapper stdout END ====
[2025-04-16 20:28:50] 2025-04-16 20:28:50,522 [wrapper] ==== wrapper stderr END ====
[2025-04-16 20:28:50]  *** Error codes and diagnostics ***
[2025-04-16 20:28:50]     "exeErrorCode": 0,
[2025-04-16 20:28:50]     "exeErrorDiag": "",
[2025-04-16 20:28:50]     "pilotErrorCode": 0,
[2025-04-16 20:28:50]     "pilotErrorDiag": "",
[2025-04-16 20:28:50]  *** Listing of results directory ***
[2025-04-16 20:28:50] total 414780
[2025-04-16 20:28:50] -rw-r--r-- 1 boinc boinc    495897 Apr 16 04:41 pilot3.tar.gz
[2025-04-16 20:28:50] -rw-r--r-- 1 boinc boinc      5111 Apr 16 05:04 queuedata.json
[2025-04-16 20:28:50] -rwx------ 1 boinc boinc     37140 Apr 16 05:05 runpilot2-wrapper.sh
[2025-04-16 20:28:50] -rw-rw-r-- 1 boinc boinc       100 Apr 16 18:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-16 20:28:50] -rwxr-xr-x 1 boinc boinc      7986 Apr 16 18:17 run_atlas
[2025-04-16 20:28:50] -rw-rw-r-- 1 boinc boinc       105 Apr 16 18:17 job.xml
[2025-04-16 20:28:50] -rw-rw-r-- 1 boinc boinc      6942 Apr 16 18:17 init_data.xml
[2025-04-16 20:28:50] -rw-r--r-- 2 boinc boinc 221307531 Apr 16 18:17 EVNT.44075481._001421.pool.root.1
[2025-04-16 20:28:50] -rw-r--r-- 2 boinc boinc     17569 Apr 16 18:17 start_atlas.sh
[2025-04-16 20:28:50] drwxrwx--x 2 boinc boinc      4096 Apr 16 18:17 shared
[2025-04-16 20:28:50] -rw-r--r-- 2 boinc boinc    508893 Apr 16 18:17 input.tar.gz
[2025-04-16 20:28:50] -rw-rw-r-- 1 boinc boinc         0 Apr 16 18:17 boinc_lockfile
[2025-04-16 20:28:50] -rw-rw-r-- 1 boinc boinc      2579 Apr 16 18:17 pandaJob.out
[2025-04-16 20:28:50] -rw------- 1 boinc boinc       424 Apr 16 18:17 setup.sh.local
[2025-04-16 20:28:50] -rw------- 1 boinc boinc    986552 Apr 16 18:17 agis_schedconf.cvmfs.json
[2025-04-16 20:28:50] -rw------- 1 boinc boinc   1603529 Apr 16 18:17 agis_ddmendpoints.agis.ALL.json
[2025-04-16 20:28:50] drwx------ 4 boinc boinc      4096 Apr 16 18:17 pilot3
[2025-04-16 20:28:50] -rw------- 1 boinc boinc 197338639 Apr 16 20:27 HITS.44075483._036194.pool.root.1
[2025-04-16 20:28:50] -rw-rw-r-- 1 boinc boinc       530 Apr 16 20:28 boinc_task_state.xml
[2025-04-16 20:28:50] -rw------- 1 boinc boinc      1022 Apr 16 20:28 memory_monitor_summary.json
[2025-04-16 20:28:50] -rw------- 1 boinc boinc        95 Apr 16 20:28 pilot_heartbeat.json
[2025-04-16 20:28:50] -rw------- 1 boinc boinc    407427 Apr 16 20:28 log.44075483._036194.job.log.tgz.1
[2025-04-16 20:28:50] -rw-rw-r-- 1 boinc boinc      8192 Apr 16 20:28 boinc_mmap_file
[2025-04-16 20:28:50] -rw-rw-r-- 1 boinc boinc        27 Apr 16 20:28 wrapper_checkpoint.txt
[2025-04-16 20:28:50] -rw------- 1 boinc boinc      7647 Apr 16 20:28 heartbeat.json
[2025-04-16 20:28:50] -rw------- 1 boinc boinc      4636 Apr 16 20:28 pilotlog.txt
[2025-04-16 20:28:50] -rw------- 1 boinc boinc    715160 Apr 16 20:28 log.44075483._036194.job.log.1
[2025-04-16 20:28:50] -rw------- 1 boinc boinc       357 Apr 16 20:28 output.list
[2025-04-16 20:28:50] -rw-rw-r-- 1 boinc boinc       620 Apr 16 20:28 runtime_log
[2025-04-16 20:28:50] -rw------- 1 boinc boinc   1136640 Apr 16 20:28 result.tar.gz
[2025-04-16 20:28:50] -rw-rw-r-- 1 boinc boinc     11427 Apr 16 20:28 runtime_log.err
[2025-04-16 20:28:50] -rw------- 1 boinc boinc       651 Apr 16 20:28 39ALDmM99O7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmJcZLDmJNvIIo.diag
[2025-04-16 20:28:50] -rw-rw-r-- 1 boinc boinc     20545 Apr 16 20:28 stderr.txt
[2025-04-16 20:28:50] HITS file was successfully produced:
[2025-04-16 20:28:50] -rw------- 1 boinc boinc 197338639 Apr 16 20:27 shared/HITS.pool.root.1
[2025-04-16 20:28:50]  *** Contents of shared directory: ***
[2025-04-16 20:28:50] total 410480
[2025-04-16 20:28:50] -rw-r--r-- 2 boinc boinc 221307531 Apr 16 18:17 ATLAS.root_0
[2025-04-16 20:28:50] -rw-r--r-- 2 boinc boinc     17569 Apr 16 18:17 start_atlas.sh
[2025-04-16 20:28:50] -rw-r--r-- 2 boinc boinc    508893 Apr 16 18:17 input.tar.gz
[2025-04-16 20:28:50] -rw------- 1 boinc boinc 197338639 Apr 16 20:27 HITS.pool.root.1
[2025-04-16 20:28:50] -rw------- 1 boinc boinc   1136640 Apr 16 20:28 result.tar.gz
20:28:52 (3083196): run_atlas exited; CPU time 45705.134898
20:28:52 (3083196): called boinc_finish(0)

</stderr_txt>
]]>

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