Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
18:57:02 (29758): wrapper (7.7.26015): starting
18:57:02 (29758): wrapper: running run_atlas (--nthreads 4)
[2025-04-16 18:57:02] Arguments: --nthreads 4
[2025-04-16 18:57:02] Threads: 4
[2025-04-16 18:57:02] Checking for CVMFS
[2025-04-16 18:57:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-16 18:57:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-16 18:57:02] Running cvmfs_config stat atlas.cern.ch
[2025-04-16 18:57:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-16 18:57:02] 2.9.2.0 3212 78 53204 144932 2 56 14946271 36864000 0 130560 0 64447 99.960 138401 48391 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-04-16 18:57:02] CVMFS is ok
[2025-04-16 18:57:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-16 18:57:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-16 18:57:02] Further information can be found at the LHC@home message board.
[2025-04-16 18:57:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-16 18:57:02] Checking for apptainer binary...
[2025-04-16 18:57:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-16 18:57:02] Running /usr/bin/apptainer --version
[2025-04-16 18:57:02] apptainer version 1.3.6-6.1
[2025-04-16 18:57:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-16 18:57:03] thA352
[2025-04-16 18:57:03] apptainer works
[2025-04-16 18:57:03] Set ATHENA_PROC_NUMBER=4
[2025-04-16 18:57:03] Set ATHENA_CORE_NUMBER=4
[2025-04-16 18:57:03] Starting ATLAS job with PandaID=6603702537
[2025-04-16 18:57:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-16 20:14:43]  *** The last 200 lines of the pilot log: ***
[2025-04-16 20:14:43]  mtime=0
[2025-04-16 20:14:43]  protocol_id=None
[2025-04-16 20:14:43]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-16 20:14:43]  replicas=None
[2025-04-16 20:14:43]  scope=mc23_13p6TeV
[2025-04-16 20:14:43]  status=None
[2025-04-16 20:14:43]  status_code=0
[2025-04-16 20:14:43]  storage_token=
[2025-04-16 20:14:43]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6603702537/log.44075483._037630.job.log.tgz.1
[2025-04-16 20:14:43]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/24/ab/log.44075483._037630.job.log.tgz.1
[2025-04-16 20:14:43]  workdir=None
[2025-04-16 20:14:43] ]
[2025-04-16 20:14:43] 2025-04-16 18:14:15,454 | INFO     | transferring file log.44075483._037630.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6603702537/log.44075483._037630.job.log.tgz.1 to /local/data/boinc/
[2025-04-16 20:14:43] 2025-04-16 18:14:15,454 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6603702537/log.44075483._037630.job.log.tgz.1 /local/data/boinc/slots/0/log.44075483._0376
[2025-04-16 20:14:43] 2025-04-16 18:14:15,475 | INFO     | adding to output.list: log.44075483._037630.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/24/ab/log.44075483._037630.job.log.tg
[2025-04-16 20:14:43] 2025-04-16 18:14:15,475 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-16 20:14:43] 2025-04-16 18:14:15,475 | INFO     | summary of transferred files:
[2025-04-16 20:14:43] 2025-04-16 18:14:15,475 | INFO     |  -- lfn=log.44075483._037630.job.log.tgz.1, status_code=0, status=transferred
[2025-04-16 20:14:43] 2025-04-16 18:14:15,475 | INFO     | stage-out finished correctly
[2025-04-16 20:14:43] 2025-04-16 18:14:17,870 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-16 20:14:43] 2025-04-16 18:14:19,175 | WARNING  | process 40094 can no longer be monitored (due to stat problems) - aborting
[2025-04-16 20:14:43] 2025-04-16 18:14:19,176 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6603702537/memory_monitor_summary.json (trf name=prmon)
[2025-04-16 20:14:43] 2025-04-16 18:14:19,217 | INFO     | number of running child processes to parent process 40094: 1
[2025-04-16 20:14:43] 2025-04-16 18:14:19,217 | INFO     | maximum number of monitored processes: 6
[2025-04-16 20:14:43] 2025-04-16 18:14:19,717 | INFO     | job 6603702537 has state=finished
[2025-04-16 20:14:43] 2025-04-16 18:14:19,718 | INFO     | preparing for final server update for job 6603702537 in state='finished'
[2025-04-16 20:14:43] 2025-04-16 18:14:19,718 | INFO     | this job has now completed (state=finished)
[2025-04-16 20:14:43] 2025-04-16 18:14:19,718 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-16 20:14:43] 2025-04-16 18:14:19,718 | INFO     | log transfer has been attempted: DONE
[2025-04-16 20:14:43] 2025-04-16 18:14:19,718 | INFO     | job 6603702537 has finished - writing final server update
[2025-04-16 20:14:43] 2025-04-16 18:14:19,719 | INFO     | total number of processed events: 400 (read)
[2025-04-16 20:14:43] 2025-04-16 18:14:19,720 | INFO     | executing command: lscpu
[2025-04-16 20:14:43] 2025-04-16 18:14:19,742 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-16 20:14:43] 2025-04-16 18:14:21,719 | INFO     | monitor loop #356: job 0:6603702537 is in state 'finished'
[2025-04-16 20:14:43] 2025-04-16 18:14:21,720 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-16 20:14:43] 2025-04-16 18:14:24,222 | INFO     | monitor loop #357: job 0:6603702537 is in state 'finished'
[2025-04-16 20:14:43] 2025-04-16 18:14:24,223 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-16 20:14:43] 2025-04-16 18:14:24,965 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-16 20:14:43] 2025-04-16 18:14:24,965 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6603702537/memory_monitor_summary.json (trf name=prmon)
[2025-04-16 20:14:43] 2025-04-16 18:14:24,966 | INFO     | extracted standard info from prmon json
[2025-04-16 20:14:43] 2025-04-16 18:14:24,966 | INFO     | extracted standard memory fields from prmon json
[2025-04-16 20:14:43] 2025-04-16 18:14:24,966 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-16 20:14:43] 2025-04-16 18:14:24,966 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-16 20:14:43] 2025-04-16 18:14:24,966 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-16 20:14:43] 2025-04-16 18:14:24,967 | INFO     | fitting pss+swap vs Time
[2025-04-16 20:14:43] 2025-04-16 18:14:24,967 | INFO     | sum of square deviations: 101843770.0
[2025-04-16 20:14:43] 2025-04-16 18:14:24,967 | INFO     | sum of deviations: 7511347484.0
[2025-04-16 20:14:43] 2025-04-16 18:14:24,967 | INFO     | mean x: 1744825033.0
[2025-04-16 20:14:43] 2025-04-16 18:14:24,967 | INFO     | mean y: 2365880.188405797
[2025-04-16 20:14:43] 2025-04-16 18:14:24,967 | INFO     | -- intersect: -128684809797.27098
[2025-04-16 20:14:43] 2025-04-16 18:14:24,967 | INFO     | intersect: -128684809797.27098
[2025-04-16 20:14:43] 2025-04-16 18:14:24,967 | INFO     | chi2: 0.8784598262019955
[2025-04-16 20:14:43] 2025-04-16 18:14:24,967 | INFO     | -- intersect: -128684809797.27098
[2025-04-16 20:14:43] 2025-04-16 18:14:24,967 | INFO     | current memory leak: 73.75 B/s (using 69 data points, chi2=0.88)
[2025-04-16 20:14:43] 2025-04-16 18:14:24,967 | INFO     | ..............................
[2025-04-16 20:14:43] 2025-04-16 18:14:24,967 | INFO     | . Timing measurements:
[2025-04-16 20:14:43] 2025-04-16 18:14:24,967 | INFO     | . get job = 0 s
[2025-04-16 20:14:43] 2025-04-16 18:14:24,967 | INFO     | . initial setup = 1 s
[2025-04-16 20:14:43] 2025-04-16 18:14:24,967 | INFO     | . payload setup = 4 s
[2025-04-16 20:14:43] 2025-04-16 18:14:24,968 | INFO     | . stage-in = 0 s
[2025-04-16 20:14:43] 2025-04-16 18:14:24,968 | INFO     | . payload execution = 4601 s
[2025-04-16 20:14:43] 2025-04-16 18:14:24,968 | INFO     | . stage-out = 0 s
[2025-04-16 20:14:43] 2025-04-16 18:14:24,968 | INFO     | . log creation = 0 s
[2025-04-16 20:14:43] 2025-04-16 18:14:24,968 | INFO     | ..............................
[2025-04-16 20:14:43] 2025-04-16 18:14:25,008 | INFO     | 
[2025-04-16 20:14:43] 2025-04-16 18:14:25,008 | INFO     | job summary report
[2025-04-16 20:14:43] 2025-04-16 18:14:25,009 | INFO     | --------------------------------------------------
[2025-04-16 20:14:43] 2025-04-16 18:14:25,009 | INFO     | PanDA job id: 6603702537
[2025-04-16 20:14:43] 2025-04-16 18:14:25,009 | INFO     | task id: 44075483
[2025-04-16 20:14:43] 2025-04-16 18:14:25,009 | INFO     | errors: (none)
[2025-04-16 20:14:43] 2025-04-16 18:14:25,009 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-16 20:14:43] 2025-04-16 18:14:25,009 | INFO     | pilot state: finished 
[2025-04-16 20:14:43] 2025-04-16 18:14:25,009 | INFO     | transexitcode: 0
[2025-04-16 20:14:43] 2025-04-16 18:14:25,009 | INFO     | exeerrorcode: 0
[2025-04-16 20:14:43] 2025-04-16 18:14:25,009 | INFO     | exeerrordiag: 
[2025-04-16 20:14:43] 2025-04-16 18:14:25,009 | INFO     | exitcode: 0
[2025-04-16 20:14:43] 2025-04-16 18:14:25,009 | INFO     | exitmsg: OK
[2025-04-16 20:14:43] 2025-04-16 18:14:25,009 | INFO     | cpuconsumptiontime: 15749 s
[2025-04-16 20:14:43] 2025-04-16 18:14:25,009 | INFO     | nevents: 400
[2025-04-16 20:14:43] 2025-04-16 18:14:25,009 | INFO     | neventsw: 0
[2025-04-16 20:14:43] 2025-04-16 18:14:25,009 | INFO     | pid: 40094
[2025-04-16 20:14:43] 2025-04-16 18:14:25,009 | INFO     | pgrp: 40094
[2025-04-16 20:14:43] 2025-04-16 18:14:25,009 | INFO     | corecount: 4
[2025-04-16 20:14:43] 2025-04-16 18:14:25,009 | INFO     | event service: False
[2025-04-16 20:14:43] 2025-04-16 18:14:25,009 | INFO     | sizes: {0: 2417368, 3: 2417574, 10: 2417602, 4609: 2443778, 4610: 2452780, 4612: 2452780, 4619: 2453078}
[2025-04-16 20:14:43] 2025-04-16 18:14:25,009 | INFO     | --------------------------------------------------
[2025-04-16 20:14:43] 2025-04-16 18:14:25,009 | INFO     | 
[2025-04-16 20:14:43] 2025-04-16 18:14:25,010 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-04-16 20:14:43] 2025-04-16 18:14:25,029 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-16 20:14:43] 2025-04-16 18:14:25,029 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-16 20:14:43] 2025-04-16 18:14:25,029 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-16 20:14:43] 2025-04-16 18:14:25,029 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-16 20:14:43] 2025-04-16 18:14:25,029 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-16 20:14:43] 2025-04-16 18:14:25,029 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-16 20:14:43] 2025-04-16 18:14:25,029 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-16 20:14:43] 2025-04-16 18:14:25,029 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-16 20:14:43] 2025-04-16 18:14:25,029 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-16 20:14:43] 2025-04-16 18:14:25,029 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-16 20:14:43] 2025-04-16 18:14:25,029 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-16 20:14:43] 2025-04-16 18:14:25,029 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-16 20:14:43] 2025-04-16 18:14:25,029 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-16 20:14:43] 2025-04-16 18:14:25,029 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-16 20:14:43] 2025-04-16 18:14:25,029 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-16 20:14:43] 2025-04-16 18:14:25,029 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-16 20:14:43] 2025-04-16 18:14:25,029 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-16 20:14:43] 2025-04-16 18:14:25,029 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-16 20:14:43] 2025-04-16 18:14:25,030 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-16 20:14:43] 2025-04-16 18:14:25,030 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-16 20:14:43] 2025-04-16 18:14:25,030 | INFO     | job 6603702537 has completed (purged errors)
[2025-04-16 20:14:43] 2025-04-16 18:14:25,030 | INFO     | overall cleanup function is called
[2025-04-16 20:14:43] 2025-04-16 18:14:26,036 | INFO     | --- collectZombieJob: --- 10, [40094]
[2025-04-16 20:14:43] 2025-04-16 18:14:26,037 | INFO     | zombie collector waiting for pid 40094
[2025-04-16 20:14:43] 2025-04-16 18:14:26,037 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-16 20:14:43] 2025-04-16 18:14:26,037 | INFO     | collected zombie processes
[2025-04-16 20:14:43] 2025-04-16 18:14:26,037 | INFO     | will attempt to kill all subprocesses of pid=40094
[2025-04-16 20:14:43] 2025-04-16 18:14:26,083 | INFO     | process IDs to be killed: [40094] (in reverse order)
[2025-04-16 20:14:43] 2025-04-16 18:14:26,117 | WARNING  | found no corresponding commands to process id(s)
[2025-04-16 20:14:43] 2025-04-16 18:14:26,117 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-16 20:14:43] 2025-04-16 18:14:26,119 | INFO     | did not find any defunct processes belonging to 40094
[2025-04-16 20:14:43] 2025-04-16 18:14:26,120 | INFO     | did not find any defunct processes belonging to 40094
[2025-04-16 20:14:43] 2025-04-16 18:14:26,120 | INFO     | ready for new job
[2025-04-16 20:14:43] 2025-04-16 18:14:26,120 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-16 20:14:43] 2025-04-16 18:14:26,121 | INFO     | **************************************
[2025-04-16 20:14:43] 2025-04-16 18:14:26,121 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-16 20:14:43] 2025-04-16 18:14:26,121 | INFO     | **************************************
[2025-04-16 20:14:43] 2025-04-16 18:14:26,121 | INFO     | 
[2025-04-16 20:14:43] 2025-04-16 18:14:26,122 | INFO     | architecture information:
[2025-04-16 20:14:43] 2025-04-16 18:14:26,122 | INFO     | executing command: cat /etc/os-release
[2025-04-16 20:14:43] 2025-04-16 18:14:26,137 | INFO     | cat /etc/os-release:
[2025-04-16 20:14:43] NAME="CentOS Linux"
[2025-04-16 20:14:43] VERSION="7 (Core)"
[2025-04-16 20:14:43] ID="centos"
[2025-04-16 20:14:43] ID_LIKE="rhel fedora"
[2025-04-16 20:14:43] VERSION_ID="7"
[2025-04-16 20:14:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-16 20:14:43] ANSI_COLOR="0;31"
[2025-04-16 20:14:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-16 20:14:43] HOME_URL="https://www.centos.org/"
[2025-04-16 20:14:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-16 20:14:43] 
[2025-04-16 20:14:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-16 20:14:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-16 20:14:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-16 20:14:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-16 20:14:43] 
[2025-04-16 20:14:43] 2025-04-16 18:14:26,137 | INFO     | **************************************
[2025-04-16 20:14:43] 2025-04-16 18:14:26,640 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-04-16 20:14:43] 2025-04-16 18:14:26,659 | INFO     | sufficient remaining disk space (241851957248 B)
[2025-04-16 20:14:43] 2025-04-16 18:14:26,659 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-16 20:14:43] 2025-04-16 18:14:26,659 | INFO     | current server update state: UPDATING_FINAL
[2025-04-16 20:14:43] 2025-04-16 18:14:26,659 | INFO     | update_server=False
[2025-04-16 20:14:43] 2025-04-16 18:14:26,659 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-16 20:14:43] 2025-04-16 18:14:26,659 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-16 20:14:43] 2025-04-16 18:14:26,659 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-16 20:14:43] 2025-04-16 18:14:26,660 | INFO     | found 0 job(s) in 20 queues
[2025-04-16 20:14:43] 2025-04-16 18:14:26,660 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-16 20:14:43] 2025-04-16 18:14:26,660 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-16 20:14:43] 2025-04-16 18:14:26,660 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-16 20:14:43] 2025-04-16 18:14:26,695 | INFO     | all data control threads have been joined
[2025-04-16 20:14:43] 2025-04-16 18:14:26,727 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-04-16 20:14:43] 2025-04-16 18:14:26,727 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-04-16 20:14:43] 2025-04-16 18:14:26,727 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-16 20:14:43] 2025-04-16 18:14:26,727 | INFO     | will abort loop
[2025-04-16 20:14:43] 2025-04-16 18:14:27,044 | INFO     | all job control threads have been joined
[2025-04-16 20:14:43] 2025-04-16 18:14:27,495 | INFO     | all payload control threads have been joined
[2025-04-16 20:14:43] 2025-04-16 18:14:27,665 | INFO     | [job] queue monitor thread has finished
[2025-04-16 20:14:43] 2025-04-16 18:14:27,665 | INFO     | [job] retrieve thread has finished
[2025-04-16 20:14:43] 2025-04-16 18:14:27,701 | INFO     | [data] control thread has finished
[2025-04-16 20:14:43] 2025-04-16 18:14:27,733 | INFO     | [job] job monitor thread has finished
[2025-04-16 20:14:43] 2025-04-16 18:14:27,752 | INFO     | [payload] execute_payloads thread has finished
[2025-04-16 20:14:43] 2025-04-16 18:14:28,050 | INFO     | [job] control thread has finished
[2025-04-16 20:14:43] 2025-04-16 18:14:28,182 | INFO     | [job] validate thread has finished
[2025-04-16 20:14:43] 2025-04-16 18:14:28,204 | INFO     | [job] create_data_payload thread has finished
[2025-04-16 20:14:43] 2025-04-16 18:14:28,302 | INFO     | [payload] validate_pre thread has finished
[2025-04-16 20:14:43] 2025-04-16 18:14:28,398 | INFO     | [payload] failed_post thread has finished
[2025-04-16 20:14:43] 2025-04-16 18:14:28,424 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-16 20:14:43] 2025-04-16 18:14:28,501 | INFO     | [payload] control thread has finished
[2025-04-16 20:14:43] 2025-04-16 18:14:28,666 | INFO     | [data] copytool_out thread has finished
[2025-04-16 20:14:43] 2025-04-16 18:14:28,925 | INFO     | [payload] validate_post thread has finished
[2025-04-16 20:14:43] 2025-04-16 18:14:29,019 | INFO     | [data] copytool_in thread has finished
[2025-04-16 20:14:43] 2025-04-16 18:14:32,431 | INFO     | [data] queue_monitor thread has finished
[2025-04-16 20:14:43] 2025-04-16 18:14:37,485 | INFO     | job.realtimelogging is not enabled
[2025-04-16 20:14:43] 2025-04-16 18:14:38,491 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-16 20:14:43] 2025-04-16 18:14:38,521 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140399079573312)>', '<ExcThread(monitor, started 140398294976256)>']
[2025-04-16 20:14:43] 2025-04-16 18:14:38,724 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-16 20:14:43] 2025-04-16 18:14:38,724 | INFO     | [monitor] control thread has ended
[2025-04-16 20:14:43] 2025-04-16 18:14:43,546 | INFO     | all workflow threads have been joined
[2025-04-16 20:14:43] 2025-04-16 18:14:43,547 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-16 20:14:43] 2025-04-16 18:14:43,547 | INFO     | traces error code: 0
[2025-04-16 20:14:43] 2025-04-16 18:14:43,547 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-16 20:14:43] 2025-04-16 18:14:43,629 [wrapper] ==== pilot stdout END ====
[2025-04-16 20:14:43] 2025-04-16 18:14:43,633 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-16 20:14:43] 2025-04-16 18:14:43,637 [wrapper] pilotpid: 33505
[2025-04-16 20:14:43] 2025-04-16 18:14:43,641 [wrapper] Pilot exit status: 0
[2025-04-16 20:14:43] 2025-04-16 18:14:43,653 [wrapper] pandaids: 6603702537
[2025-04-16 20:14:43] 2025-04-16 18:14:43,676 [wrapper] cleanup supervisor_pilot   53207 33506
[2025-04-16 20:14:43] 2025-04-16 18:14:43,681 [wrapper] Test setup, not cleaning
[2025-04-16 20:14:43] 2025-04-16 18:14:43,684 [wrapper] apfmon messages muted
[2025-04-16 20:14:43] 2025-04-16 18:14:43,689 [wrapper] ==== wrapper stdout END ====
[2025-04-16 20:14:43] 2025-04-16 18:14:43,693 [wrapper] ==== wrapper stderr END ====
[2025-04-16 20:14:43]  *** Error codes and diagnostics ***
[2025-04-16 20:14:43]     "exeErrorCode": 0,
[2025-04-16 20:14:43]     "exeErrorDiag": "",
[2025-04-16 20:14:43]     "pilotErrorCode": 0,
[2025-04-16 20:14:43]     "pilotErrorDiag": "",
[2025-04-16 20:14:43]  *** Listing of results directory ***
[2025-04-16 20:14:43] total 409756
[2025-04-16 20:14:43] -rw-r--r-- 1 boinc boinc    495897 Apr 16 09:44 pilot3.tar.gz
[2025-04-16 20:14:43] -rw-r--r-- 1 boinc boinc      5111 Apr 16 09:50 queuedata.json
[2025-04-16 20:14:43] -rwx------ 1 boinc boinc     37140 Apr 16 09:51 runpilot2-wrapper.sh
[2025-04-16 20:14:43] -rw-r--r-- 1 boinc boinc       100 Apr 16 18:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-16 20:14:43] -rwxr-xr-x 1 boinc boinc      7986 Apr 16 18:57 run_atlas
[2025-04-16 20:14:43] -rw-r--r-- 1 boinc boinc       105 Apr 16 18:57 job.xml
[2025-04-16 20:14:43] -rw-r--r-- 2 boinc boinc 222933930 Apr 16 18:57 EVNT.44075481._001479.pool.root.1
[2025-04-16 20:14:43] -rw-r--r-- 1 boinc boinc      6853 Apr 16 18:57 init_data.xml
[2025-04-16 20:14:43] drwxrwx--x 2 boinc boinc      4096 Apr 16 18:57 shared
[2025-04-16 20:14:43] -rw-r--r-- 2 boinc boinc    508896 Apr 16 18:57 input.tar.gz
[2025-04-16 20:14:43] -rw-r--r-- 2 boinc boinc     17569 Apr 16 18:57 start_atlas.sh
[2025-04-16 20:14:43] -rw-r--r-- 1 boinc boinc         0 Apr 16 18:57 boinc_lockfile
[2025-04-16 20:14:43] -rw-r--r-- 1 boinc boinc      2578 Apr 16 18:57 pandaJob.out
[2025-04-16 20:14:43] -rw------- 1 boinc boinc       424 Apr 16 18:57 setup.sh.local
[2025-04-16 20:14:43] -rw------- 1 boinc boinc    986568 Apr 16 18:57 agis_schedconf.cvmfs.json
[2025-04-16 20:14:43] -rw------- 1 boinc boinc   1603529 Apr 16 18:57 agis_ddmendpoints.agis.ALL.json
[2025-04-16 20:14:43] drwx------ 4 boinc boinc      4096 Apr 16 18:57 pilot3
[2025-04-16 20:14:43] -rw------- 1 boinc boinc        95 Apr 16 20:13 pilot_heartbeat.json
[2025-04-16 20:14:43] -rw-r--r-- 1 boinc boinc       529 Apr 16 20:13 boinc_task_state.xml
[2025-04-16 20:14:43] -rw------- 1 boinc boinc 191432519 Apr 16 20:13 HITS.44075483._037630.pool.root.1
[2025-04-16 20:14:43] -rw------- 1 boinc boinc      1023 Apr 16 20:14 memory_monitor_summary.json
[2025-04-16 20:14:43] -rw------- 1 boinc boinc    236454 Apr 16 20:14 log.44075483._037630.job.log.tgz.1
[2025-04-16 20:14:43] -rw-r--r-- 1 boinc boinc      8192 Apr 16 20:14 boinc_mmap_file
[2025-04-16 20:14:43] -rw-r--r-- 1 boinc boinc        27 Apr 16 20:14 wrapper_checkpoint.txt
[2025-04-16 20:14:43] -rw------- 1 boinc boinc      7662 Apr 16 20:14 heartbeat.json
[2025-04-16 20:14:43] -rw------- 1 boinc boinc      4738 Apr 16 20:14 pilotlog.txt
[2025-04-16 20:14:43] -rw------- 1 boinc boinc    452863 Apr 16 20:14 log.44075483._037630.job.log.1
[2025-04-16 20:14:43] -rw------- 1 boinc boinc       357 Apr 16 20:14 output.list
[2025-04-16 20:14:43] -rw-r--r-- 1 boinc boinc       620 Apr 16 20:14 runtime_log
[2025-04-16 20:14:43] -rw------- 1 boinc boinc    706560 Apr 16 20:14 result.tar.gz
[2025-04-16 20:14:43] -rw------- 1 boinc boinc       658 Apr 16 20:14 vk2MDm7iCP7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDm9rZLDmZ1If0m.diag
[2025-04-16 20:14:43] -rw-r--r-- 1 boinc boinc     11099 Apr 16 20:14 runtime_log.err
[2025-04-16 20:14:43] -rw-r--r-- 1 boinc boinc     21590 Apr 16 20:14 stderr.txt
[2025-04-16 20:14:43] HITS file was successfully produced:
[2025-04-16 20:14:43] -rw------- 1 boinc boinc 191432519 Apr 16 20:13 shared/HITS.pool.root.1
[2025-04-16 20:14:43]  *** Contents of shared directory: ***
[2025-04-16 20:14:43] total 405880
[2025-04-16 20:14:43] -rw-r--r-- 2 boinc boinc 222933930 Apr 16 18:57 ATLAS.root_0
[2025-04-16 20:14:43] -rw-r--r-- 2 boinc boinc    508896 Apr 16 18:57 input.tar.gz
[2025-04-16 20:14:43] -rw-r--r-- 2 boinc boinc     17569 Apr 16 18:57 start_atlas.sh
[2025-04-16 20:14:43] -rw------- 1 boinc boinc 191432519 Apr 16 20:13 HITS.pool.root.1
[2025-04-16 20:14:43] -rw------- 1 boinc boinc    706560 Apr 16 20:14 result.tar.gz
20:14:45 (29758): run_atlas exited; CPU time 15764.369368
20:14:45 (29758): called boinc_finish(0)

</stderr_txt>
]]>

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