Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:31:52 (23860): wrapper (7.7.26015): starting
10:31:52 (23860): wrapper: running run_atlas (--nthreads 12)
[2025-04-16 10:31:52] Arguments: --nthreads 12
[2025-04-16 10:31:52] Threads: 12
[2025-04-16 10:31:52] Checking for CVMFS
[2025-04-16 10:31:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-16 10:31:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-16 10:31:52] Running cvmfs_config stat atlas.cern.ch
[2025-04-16 10:31:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-16 10:31:52] 2.11.2.0 2970 8751 85272 144927 0 58 15117906 20275201 1 130560 0 7679596 99.993 1543887 59898 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-16 10:31:52] CVMFS is ok
[2025-04-16 10:31:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-16 10:31:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-16 10:31:52] Further information can be found at the LHC@home message board.
[2025-04-16 10:31:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-16 10:31:52] Checking for apptainer binary...
[2025-04-16 10:31:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-16 10:31:52] Running /usr/bin/apptainer --version
[2025-04-16 10:31:52] apptainer version 1.3.2-1.el7
[2025-04-16 10:31:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-16 10:31:54] c-115-42.aglt2.org
[2025-04-16 10:31:54] apptainer works
[2025-04-16 10:31:54] Set ATHENA_PROC_NUMBER=12
[2025-04-16 10:31:54] Set ATHENA_CORE_NUMBER=12
[2025-04-16 10:31:54] Starting ATLAS job with PandaID=6603900897
[2025-04-16 10:31:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-16 11:47:24]  *** The last 200 lines of the pilot log: ***
[2025-04-16 11:47:24]  lfn=log.44075483._039672.job.log.tgz.1
[2025-04-16 11:47:24]  mtime=0
[2025-04-16 11:47:24]  protocol_id=None
[2025-04-16 11:47:24]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-16 11:47:24]  replicas=None
[2025-04-16 11:47:24]  scope=mc23_13p6TeV
[2025-04-16 11:47:24]  status=None
[2025-04-16 11:47:24]  status_code=0
[2025-04-16 11:47:24]  storage_token=
[2025-04-16 11:47:24]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6603900897/log.44075483._039672.job.log.tgz.1
[2025-04-16 11:47:24]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/56/89/log.44075483._039672.job.log.tgz.1
[2025-04-16 11:47:24]  workdir=None
[2025-04-16 11:47:24] ]
[2025-04-16 11:47:24] 2025-04-16 15:46:56,884 | INFO     | transferring file log.44075483._039672.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6603900897/log.44075483._039672.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-04-16 11:47:24] 2025-04-16 15:46:56,884 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6603900897/log.44075483._039672.job.log.tgz.1 /tmp/boinchome/slots/0/log.44075483._039672.job
[2025-04-16 11:47:24] 2025-04-16 15:46:56,905 | INFO     | adding to output.list: log.44075483._039672.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/56/89/log.44075483._039672.job.log.tg
[2025-04-16 11:47:24] 2025-04-16 15:46:56,906 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-16 11:47:24] 2025-04-16 15:46:56,906 | INFO     | summary of transferred files:
[2025-04-16 11:47:24] 2025-04-16 15:46:56,907 | INFO     |  -- lfn=log.44075483._039672.job.log.tgz.1, status_code=0, status=transferred
[2025-04-16 11:47:24] 2025-04-16 15:46:56,907 | INFO     | stage-out finished correctly
[2025-04-16 11:47:24] 2025-04-16 15:46:58,890 | INFO     | monitor loop #339: job 0:6603900897 is in state 'finished'
[2025-04-16 11:47:24] 2025-04-16 15:46:58,890 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-16 11:47:24] 2025-04-16 15:46:59,463 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-16 11:47:24] 2025-04-16 15:47:00,139 | INFO     | job 6603900897 has state=finished
[2025-04-16 11:47:24] 2025-04-16 15:47:00,139 | INFO     | preparing for final server update for job 6603900897 in state='finished'
[2025-04-16 11:47:24] 2025-04-16 15:47:00,139 | INFO     | this job has now completed (state=finished)
[2025-04-16 11:47:24] 2025-04-16 15:47:00,140 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-16 11:47:24] 2025-04-16 15:47:00,140 | INFO     | log transfer has been attempted: DONE
[2025-04-16 11:47:24] 2025-04-16 15:47:00,140 | INFO     | job 6603900897 has finished - writing final server update
[2025-04-16 11:47:24] 2025-04-16 15:47:00,140 | INFO     | total number of processed events: 400 (read)
[2025-04-16 11:47:24] 2025-04-16 15:47:00,142 | INFO     | executing command: lscpu
[2025-04-16 11:47:24] 2025-04-16 15:47:00,168 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-16 11:47:24] 2025-04-16 15:47:01,399 | INFO     | monitor loop #340: job 0:6603900897 is in state 'finished'
[2025-04-16 11:47:24] 2025-04-16 15:47:01,399 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-16 11:47:24] 2025-04-16 15:47:02,018 | INFO     | 4498s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-04-16 11:47:24] 2025-04-16 15:47:03,129 | INFO     | PID=27538 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-04-16 11:47:24] 2025-04-16 15:47:03,902 | INFO     | monitor loop #341: job 0:6603900897 is in state 'finished'
[2025-04-16 11:47:24] 2025-04-16 15:47:03,902 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-16 11:47:24] 2025-04-16 15:47:04,041 [wrapper] supervise_pilot (15 min periods counter: 6)
[2025-04-16 11:47:24] 2025-04-16 15:47:05,565 | INFO     | CPU arch script returned: x86-64-v2
[2025-04-16 11:47:24] 2025-04-16 15:47:05,566 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6603900897/memory_monitor_summary.json (trf name=prmon)
[2025-04-16 11:47:24] 2025-04-16 15:47:05,567 | INFO     | extracted standard info from prmon json
[2025-04-16 11:47:24] 2025-04-16 15:47:05,567 | INFO     | extracted standard memory fields from prmon json
[2025-04-16 11:47:24] 2025-04-16 15:47:05,567 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-16 11:47:24] 2025-04-16 15:47:05,568 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-16 11:47:24] 2025-04-16 15:47:05,568 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-16 11:47:24] 2025-04-16 15:47:05,570 | INFO     | fitting pss+swap vs Time
[2025-04-16 11:47:24] 2025-04-16 15:47:05,570 | INFO     | sum of square deviations: 93240818.0
[2025-04-16 11:47:24] 2025-04-16 15:47:05,570 | INFO     | sum of deviations: 15644904483.999998
[2025-04-16 11:47:24] 2025-04-16 15:47:05,571 | INFO     | mean x: 1744816273.0
[2025-04-16 11:47:24] 2025-04-16 15:47:05,571 | INFO     | mean y: 2635759.567164179
[2025-04-16 11:47:24] 2025-04-16 15:47:05,571 | INFO     | -- intersect: -292760603760.8526
[2025-04-16 11:47:24] 2025-04-16 15:47:05,571 | INFO     | intersect: -292760603760.8526
[2025-04-16 11:47:24] 2025-04-16 15:47:05,571 | INFO     | chi2: 2.2497244786432367
[2025-04-16 11:47:24] 2025-04-16 15:47:05,571 | INFO     | -- intersect: -292760603760.8526
[2025-04-16 11:47:24] 2025-04-16 15:47:05,571 | INFO     | current memory leak: 167.79 B/s (using 67 data points, chi2=2.25)
[2025-04-16 11:47:24] 2025-04-16 15:47:05,572 | INFO     | ..............................
[2025-04-16 11:47:24] 2025-04-16 15:47:05,572 | INFO     | . Timing measurements:
[2025-04-16 11:47:24] 2025-04-16 15:47:05,572 | INFO     | . get job = 0 s
[2025-04-16 11:47:24] 2025-04-16 15:47:05,572 | INFO     | . initial setup = 2 s
[2025-04-16 11:47:24] 2025-04-16 15:47:05,572 | INFO     | . payload setup = 7 s
[2025-04-16 11:47:24] 2025-04-16 15:47:05,572 | INFO     | . stage-in = 0 s
[2025-04-16 11:47:24] 2025-04-16 15:47:05,572 | INFO     | . payload execution = 4463 s
[2025-04-16 11:47:24] 2025-04-16 15:47:05,572 | INFO     | . stage-out = 0 s
[2025-04-16 11:47:24] 2025-04-16 15:47:05,573 | INFO     | . log creation = 0 s
[2025-04-16 11:47:24] 2025-04-16 15:47:05,573 | INFO     | ..............................
[2025-04-16 11:47:24] 2025-04-16 15:47:05,728 | INFO     | 
[2025-04-16 11:47:24] 2025-04-16 15:47:05,729 | INFO     | job summary report
[2025-04-16 11:47:24] 2025-04-16 15:47:05,729 | INFO     | --------------------------------------------------
[2025-04-16 11:47:24] 2025-04-16 15:47:05,729 | INFO     | PanDA job id: 6603900897
[2025-04-16 11:47:24] 2025-04-16 15:47:05,729 | INFO     | task id: 44075483
[2025-04-16 11:47:24] 2025-04-16 15:47:05,729 | INFO     | errors: (none)
[2025-04-16 11:47:24] 2025-04-16 15:47:05,729 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-16 11:47:24] 2025-04-16 15:47:05,730 | INFO     | pilot state: finished 
[2025-04-16 11:47:24] 2025-04-16 15:47:05,730 | INFO     | transexitcode: 0
[2025-04-16 11:47:24] 2025-04-16 15:47:05,730 | INFO     | exeerrorcode: 0
[2025-04-16 11:47:24] 2025-04-16 15:47:05,730 | INFO     | exeerrordiag: 
[2025-04-16 11:47:24] 2025-04-16 15:47:05,730 | INFO     | exitcode: 0
[2025-04-16 11:47:24] 2025-04-16 15:47:05,730 | INFO     | exitmsg: OK
[2025-04-16 11:47:24] 2025-04-16 15:47:05,731 | INFO     | cpuconsumptiontime: 41748 s
[2025-04-16 11:47:24] 2025-04-16 15:47:05,731 | INFO     | nevents: 400
[2025-04-16 11:47:24] 2025-04-16 15:47:05,731 | INFO     | neventsw: 0
[2025-04-16 11:47:24] 2025-04-16 15:47:05,731 | INFO     | pid: 1554
[2025-04-16 11:47:24] 2025-04-16 15:47:05,731 | INFO     | pgrp: 1554
[2025-04-16 11:47:24] 2025-04-16 15:47:05,731 | INFO     | corecount: 12
[2025-04-16 11:47:24] 2025-04-16 15:47:05,732 | INFO     | event service: False
[2025-04-16 11:47:24] 2025-04-16 15:47:05,732 | INFO     | sizes: {0: 2417138, 1: 2417393, 6: 2417599, 12: 2417627, 4474: 2443579, 4475: 2452520, 4477: 2452704, 4483: 2452874}
[2025-04-16 11:47:24] 2025-04-16 15:47:05,732 | INFO     | --------------------------------------------------
[2025-04-16 11:47:24] 2025-04-16 15:47:05,732 | INFO     | 
[2025-04-16 11:47:24] 2025-04-16 15:47:05,732 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-04-16 11:47:24] 2025-04-16 15:47:05,755 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-16 11:47:24] 2025-04-16 15:47:05,755 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-16 11:47:24] 2025-04-16 15:47:05,755 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-16 11:47:24] 2025-04-16 15:47:05,755 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-16 11:47:24] 2025-04-16 15:47:05,756 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-16 11:47:24] 2025-04-16 15:47:05,756 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-16 11:47:24] 2025-04-16 15:47:05,756 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-16 11:47:24] 2025-04-16 15:47:05,756 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-16 11:47:24] 2025-04-16 15:47:05,756 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-16 11:47:24] 2025-04-16 15:47:05,756 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-16 11:47:24] 2025-04-16 15:47:05,757 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-16 11:47:24] 2025-04-16 15:47:05,757 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-16 11:47:24] 2025-04-16 15:47:05,757 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-16 11:47:24] 2025-04-16 15:47:05,757 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-16 11:47:24] 2025-04-16 15:47:05,757 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-16 11:47:24] 2025-04-16 15:47:05,757 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-16 11:47:24] 2025-04-16 15:47:05,758 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-16 11:47:24] 2025-04-16 15:47:05,758 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-16 11:47:24] 2025-04-16 15:47:05,758 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-16 11:47:24] 2025-04-16 15:47:05,758 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-16 11:47:24] 2025-04-16 15:47:05,758 | INFO     | job 6603900897 has completed (purged errors)
[2025-04-16 11:47:24] 2025-04-16 15:47:05,758 | INFO     | overall cleanup function is called
[2025-04-16 11:47:24] 2025-04-16 15:47:06,766 | INFO     | --- collectZombieJob: --- 10, [1554]
[2025-04-16 11:47:24] 2025-04-16 15:47:06,767 | INFO     | zombie collector waiting for pid 1554
[2025-04-16 11:47:24] 2025-04-16 15:47:06,767 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-16 11:47:24] 2025-04-16 15:47:06,767 | INFO     | collected zombie processes
[2025-04-16 11:47:24] 2025-04-16 15:47:06,767 | INFO     | will attempt to kill all subprocesses of pid=1554
[2025-04-16 11:47:24] 2025-04-16 15:47:06,854 | INFO     | process IDs to be killed: [1554] (in reverse order)
[2025-04-16 11:47:24] 2025-04-16 15:47:06,904 | WARNING  | found no corresponding commands to process id(s)
[2025-04-16 11:47:24] 2025-04-16 15:47:06,904 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-16 11:47:24] 2025-04-16 15:47:06,908 | INFO     | did not find any defunct processes belonging to 1554
[2025-04-16 11:47:24] 2025-04-16 15:47:06,911 | INFO     | did not find any defunct processes belonging to 1554
[2025-04-16 11:47:24] 2025-04-16 15:47:06,911 | INFO     | ready for new job
[2025-04-16 11:47:24] 2025-04-16 15:47:06,911 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-16 11:47:24] 2025-04-16 15:47:06,912 | INFO     | **************************************
[2025-04-16 11:47:24] 2025-04-16 15:47:06,912 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-16 11:47:24] 2025-04-16 15:47:06,912 | INFO     | **************************************
[2025-04-16 11:47:24] 2025-04-16 15:47:06,912 | INFO     | 
[2025-04-16 11:47:24] 2025-04-16 15:47:06,913 | INFO     | architecture information:
[2025-04-16 11:47:24] 2025-04-16 15:47:06,913 | INFO     | executing command: cat /etc/os-release
[2025-04-16 11:47:24] 2025-04-16 15:47:06,926 | INFO     | cat /etc/os-release:
[2025-04-16 11:47:24] NAME="CentOS Linux"
[2025-04-16 11:47:24] VERSION="7 (Core)"
[2025-04-16 11:47:24] ID="centos"
[2025-04-16 11:47:24] ID_LIKE="rhel fedora"
[2025-04-16 11:47:24] VERSION_ID="7"
[2025-04-16 11:47:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-16 11:47:24] ANSI_COLOR="0;31"
[2025-04-16 11:47:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-16 11:47:24] HOME_URL="https://www.centos.org/"
[2025-04-16 11:47:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-16 11:47:24] 
[2025-04-16 11:47:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-16 11:47:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-16 11:47:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-16 11:47:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-16 11:47:24] 
[2025-04-16 11:47:24] 2025-04-16 15:47:06,927 | INFO     | **************************************
[2025-04-16 11:47:24] 2025-04-16 15:47:07,428 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-04-16 11:47:24] 2025-04-16 15:47:07,445 | INFO     | sufficient remaining disk space (18621661184 B)
[2025-04-16 11:47:24] 2025-04-16 15:47:07,445 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-16 11:47:24] 2025-04-16 15:47:07,445 | INFO     | current server update state: UPDATING_FINAL
[2025-04-16 11:47:24] 2025-04-16 15:47:07,445 | INFO     | update_server=False
[2025-04-16 11:47:24] 2025-04-16 15:47:07,446 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-16 11:47:24] 2025-04-16 15:47:07,446 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-16 11:47:24] 2025-04-16 15:47:07,446 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-16 11:47:24] 2025-04-16 15:47:07,447 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-16 11:47:24] 2025-04-16 15:47:07,447 | INFO     | found 0 job(s) in 20 queues
[2025-04-16 11:47:24] 2025-04-16 15:47:07,447 | INFO     | aborting loop
[2025-04-16 11:47:24] 2025-04-16 15:47:07,447 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-16 11:47:24] 2025-04-16 15:47:07,448 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-16 11:47:24] 2025-04-16 15:47:07,504 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-16 11:47:24] 2025-04-16 15:47:08,052 | INFO     | all data control threads have been joined
[2025-04-16 11:47:24] 2025-04-16 15:47:08,451 | INFO     | [job] retrieve thread has finished
[2025-04-16 11:47:24] 2025-04-16 15:47:08,451 | INFO     | [job] queue monitor thread has finished
[2025-04-16 11:47:24] 2025-04-16 15:47:08,453 | INFO     | all payload control threads have been joined
[2025-04-16 11:47:24] 2025-04-16 15:47:08,453 | INFO     | [job] job monitor thread has finished
[2025-04-16 11:47:24] 2025-04-16 15:47:08,516 | INFO     | [job] create_data_payload thread has finished
[2025-04-16 11:47:24] 2025-04-16 15:47:08,519 | INFO     | [data] copytool_in thread has finished
[2025-04-16 11:47:24] 2025-04-16 15:47:08,572 | INFO     | all job control threads have been joined
[2025-04-16 11:47:24] 2025-04-16 15:47:09,058 | INFO     | [data] control thread has finished
[2025-04-16 11:47:24] 2025-04-16 15:47:09,080 | INFO     | [payload] validate_pre thread has finished
[2025-04-16 11:47:24] 2025-04-16 15:47:09,125 | INFO     | [payload] failed_post thread has finished
[2025-04-16 11:47:24] 2025-04-16 15:47:09,155 | INFO     | [payload] execute_payloads thread has finished
[2025-04-16 11:47:24] 2025-04-16 15:47:09,458 | INFO     | [payload] control thread has finished
[2025-04-16 11:47:24] 2025-04-16 15:47:09,510 | INFO     | [data] copytool_out thread has finished
[2025-04-16 11:47:24] 2025-04-16 15:47:09,578 | INFO     | [job] control thread has finished
[2025-04-16 11:47:24] 2025-04-16 15:47:09,770 | INFO     | [job] validate thread has finished
[2025-04-16 11:47:24] 2025-04-16 15:47:10,029 | INFO     | [payload] validate_post thread has finished
[2025-04-16 11:47:24] 2025-04-16 15:47:10,047 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-16 11:47:24] 2025-04-16 15:47:14,052 | INFO     | [data] queue_monitor thread has finished
[2025-04-16 11:47:24] 2025-04-16 15:47:18,163 | INFO     | job.realtimelogging is not enabled
[2025-04-16 11:47:24] 2025-04-16 15:47:19,168 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-16 11:47:24] 2025-04-16 15:47:19,482 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140648789604160)>', '<ExcThread(monitor, started 140647679907584)>']
[2025-04-16 11:47:24] 2025-04-16 15:47:19,509 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-16 11:47:24] 2025-04-16 15:47:19,510 | INFO     | [monitor] control thread has ended
[2025-04-16 11:47:24] 2025-04-16 15:47:24,492 | INFO     | all workflow threads have been joined
[2025-04-16 11:47:24] 2025-04-16 15:47:24,492 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-16 11:47:24] 2025-04-16 15:47:24,493 | INFO     | traces error code: 0
[2025-04-16 11:47:24] 2025-04-16 15:47:24,493 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-16 11:47:24] 2025-04-16 15:47:24,571 [wrapper] ==== pilot stdout END ====
[2025-04-16 11:47:24] 2025-04-16 15:47:24,574 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-16 11:47:24] 2025-04-16 15:47:24,577 [wrapper] pilotpid: 27538
[2025-04-16 11:47:24] 2025-04-16 15:47:24,580 [wrapper] Pilot exit status: 0
[2025-04-16 11:47:24] 2025-04-16 15:47:24,594 [wrapper] pandaids: 6603900897
[2025-04-16 11:47:24] 2025-04-16 15:47:24,630 [wrapper] cleanup supervisor_pilot  6107 27539
[2025-04-16 11:47:24] 2025-04-16 15:47:24,634 [wrapper] Test setup, not cleaning
[2025-04-16 11:47:24] 2025-04-16 15:47:24,637 [wrapper] apfmon messages muted
[2025-04-16 11:47:24] 2025-04-16 15:47:24,641 [wrapper] ==== wrapper stdout END ====
[2025-04-16 11:47:24] 2025-04-16 15:47:24,644 [wrapper] ==== wrapper stderr END ====
[2025-04-16 11:47:24]  *** Error codes and diagnostics ***
[2025-04-16 11:47:24]     "exeErrorCode": 0,
[2025-04-16 11:47:24]     "exeErrorDiag": "",
[2025-04-16 11:47:24]     "pilotErrorCode": 0,
[2025-04-16 11:47:24]     "pilotErrorDiag": "",
[2025-04-16 11:47:24]  *** Listing of results directory ***
[2025-04-16 11:47:24] total 413776
[2025-04-16 11:47:24] -rw-r--r-- 1 boincer umatlas    495897 Apr 16 06:49 pilot3.tar.gz
[2025-04-16 11:47:24] -rwx------ 1 boincer umatlas     37140 Apr 16 07:01 runpilot2-wrapper.sh
[2025-04-16 11:47:24] -rw-r--r-- 1 boincer umatlas      5111 Apr 16 07:01 queuedata.json
[2025-04-16 11:47:24] -rw-r--r-- 1 boincer umatlas       100 Apr 16 10:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-16 11:47:24] -rwxr-xr-x 1 boincer umatlas      7986 Apr 16 10:31 run_atlas
[2025-04-16 11:47:24] -rw-r--r-- 1 boincer umatlas       105 Apr 16 10:31 job.xml
[2025-04-16 11:47:24] -rw-r--r-- 2 boincer umatlas 225282231 Apr 16 10:31 EVNT.44075481._001556.pool.root.1
[2025-04-16 11:47:24] -rw-r--r-- 2 boincer umatlas     17569 Apr 16 10:31 start_atlas.sh
[2025-04-16 11:47:24] drwxrwx--x 2 boincer umatlas      4096 Apr 16 10:31 shared
[2025-04-16 11:47:24] -rw-r--r-- 2 boincer umatlas    508890 Apr 16 10:31 input.tar.gz
[2025-04-16 11:47:24] -rw-r--r-- 1 boincer umatlas         0 Apr 16 10:31 boinc_lockfile
[2025-04-16 11:47:24] -rw-r--r-- 1 boincer umatlas      2578 Apr 16 10:31 pandaJob.out
[2025-04-16 11:47:24] -rw------- 1 boincer umatlas       424 Apr 16 10:31 setup.sh.local
[2025-04-16 11:47:24] -rw------- 1 boincer umatlas    986552 Apr 16 10:32 agis_schedconf.cvmfs.json
[2025-04-16 11:47:24] -rw------- 1 boincer umatlas   1603529 Apr 16 10:32 agis_ddmendpoints.agis.ALL.json
[2025-04-16 11:47:24] drwx------ 4 boincer umatlas      4096 Apr 16 10:32 pilot3
[2025-04-16 11:47:24] -rw-r--r-- 1 boincer umatlas      5868 Apr 16 11:39 init_data.xml
[2025-04-16 11:47:24] -rw------- 1 boincer umatlas 192985699 Apr 16 11:46 HITS.44075483._039672.pool.root.1
[2025-04-16 11:47:24] -rw-r--r-- 1 boincer umatlas       529 Apr 16 11:46 boinc_task_state.xml
[2025-04-16 11:47:24] -rw------- 1 boincer umatlas      1050 Apr 16 11:46 memory_monitor_summary.json
[2025-04-16 11:47:24] -rw------- 1 boincer umatlas    370435 Apr 16 11:46 log.44075483._039672.job.log.tgz.1
[2025-04-16 11:47:24] -rw------- 1 boincer umatlas        95 Apr 16 11:46 pilot_heartbeat.json
[2025-04-16 11:47:24] -rw------- 1 boincer umatlas      7753 Apr 16 11:47 heartbeat.json
[2025-04-16 11:47:24] -rw-r--r-- 1 boincer umatlas        27 Apr 16 11:47 wrapper_checkpoint.txt
[2025-04-16 11:47:24] -rw-r--r-- 1 boincer umatlas      8192 Apr 16 11:47 boinc_mmap_file
[2025-04-16 11:47:24] -rw------- 1 boincer umatlas      4548 Apr 16 11:47 pilotlog.txt
[2025-04-16 11:47:24] -rw------- 1 boincer umatlas    433312 Apr 16 11:47 log.44075483._039672.job.log.1
[2025-04-16 11:47:24] -rw------- 1 boincer umatlas       357 Apr 16 11:47 output.list
[2025-04-16 11:47:24] -rw-r--r-- 1 boincer umatlas       620 Apr 16 11:47 runtime_log
[2025-04-16 11:47:24] -rw------- 1 boincer umatlas    819200 Apr 16 11:47 result.tar.gz
[2025-04-16 11:47:24] -rw-r--r-- 1 boincer umatlas     11015 Apr 16 11:47 runtime_log.err
[2025-04-16 11:47:24] -rw------- 1 boincer umatlas       658 Apr 16 11:47 lKpLDm4gFP7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmdCaLDmYN6wfm.diag
[2025-04-16 11:47:24] -rw-r--r-- 1 boincer umatlas     21643 Apr 16 11:47 stderr.txt
[2025-04-16 11:47:24] HITS file was successfully produced:
[2025-04-16 11:47:24] -rw------- 1 boincer umatlas 192985699 Apr 16 11:46 shared/HITS.pool.root.1
[2025-04-16 11:47:24]  *** Contents of shared directory: ***
[2025-04-16 11:47:24] total 409788
[2025-04-16 11:47:24] -rw-r--r-- 2 boincer umatlas 225282231 Apr 16 10:31 ATLAS.root_0
[2025-04-16 11:47:24] -rw-r--r-- 2 boincer umatlas     17569 Apr 16 10:31 start_atlas.sh
[2025-04-16 11:47:24] -rw-r--r-- 2 boincer umatlas    508890 Apr 16 10:31 input.tar.gz
[2025-04-16 11:47:24] -rw------- 1 boincer umatlas 192985699 Apr 16 11:46 HITS.pool.root.1
[2025-04-16 11:47:24] -rw------- 1 boincer umatlas    819200 Apr 16 11:47 result.tar.gz
11:47:26 (23860): run_atlas exited; CPU time 41747.734955
11:47:26 (23860): called boinc_finish(0)

</stderr_txt>
]]>

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