Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:17:57 (264977): wrapper (7.7.26015): starting
10:17:57 (264977): wrapper: running run_atlas (--nthreads 10)
[2025-04-16 10:17:57] Arguments: --nthreads 10
[2025-04-16 10:17:57] Threads: 10
[2025-04-16 10:17:57] Checking for CVMFS
[2025-04-16 10:17:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-16 10:17:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-16 10:17:58] Running cvmfs_config stat atlas.cern.ch
[2025-04-16 10:18:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-16 10:18:00] 2.12.6.0 456607 21432 211772 144927 3 62 30677326 32935937 19377 16776704 0 84440415 99.572 100753978 25178 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-04-16 10:18:00] CVMFS is ok
[2025-04-16 10:18:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-16 10:18:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-16 10:18:00] Further information can be found at the LHC@home message board.
[2025-04-16 10:18:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-16 10:18:00] Checking for apptainer binary...
[2025-04-16 10:18:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-16 10:18:00] Running /usr/bin/apptainer --version
[2025-04-16 10:18:00] apptainer version 1.4.0-1.el9
[2025-04-16 10:18:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-16 10:18:01] c-8-37.aglt2.org
[2025-04-16 10:18:01] apptainer works
[2025-04-16 10:18:01] Set ATHENA_PROC_NUMBER=10
[2025-04-16 10:18:01] Set ATHENA_CORE_NUMBER=10
[2025-04-16 10:18:01] Starting ATLAS job with PandaID=6603900731
[2025-04-16 10:18:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-17 02:42:41]  *** The last 200 lines of the pilot log: ***
[2025-04-17 02:42:41] 2025-04-17 06:42:16,003 | INFO     | monitor loop #3106: job 0:6603900731 is in state 'finished'
[2025-04-17 02:42:41] 2025-04-17 06:42:16,003 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-17 02:42:41] 2025-04-17 06:42:18,082 | INFO     | PID=283305 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-04-17 02:42:41] 2025-04-17 06:42:18,082 | INFO     | .. there are 41 such processes running
[2025-04-17 02:42:41] 2025-04-17 06:42:18,514 | INFO     | monitor loop #3107: job 0:6603900731 is in state 'finished'
[2025-04-17 02:42:41] 2025-04-17 06:42:18,514 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-17 02:42:41] 2025-04-17 06:42:19,071 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-17 02:42:41] 2025-04-17 06:42:19,071 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6603900731/memory_monitor_summary.json (trf name=prmon)
[2025-04-17 02:42:41] 2025-04-17 06:42:19,072 | INFO     | extracted standard info from prmon json
[2025-04-17 02:42:41] 2025-04-17 06:42:19,072 | INFO     | extracted standard memory fields from prmon json
[2025-04-17 02:42:41] 2025-04-17 06:42:19,072 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-17 02:42:41] 2025-04-17 06:42:19,082 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-17 02:42:41] 2025-04-17 06:42:19,082 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-17 02:42:41] 2025-04-17 06:42:19,167 | INFO     | fitting pss+swap vs Time
[2025-04-17 02:42:41] 2025-04-17 06:42:19,169 | INFO     | sum of square deviations: 276922179261.9625
[2025-04-17 02:42:41] 2025-04-17 06:42:19,332 | INFO     | sum of deviations: 629884218973.4753
[2025-04-17 02:42:41] 2025-04-17 06:42:19,333 | INFO     | mean x: 1744842734.672897
[2025-04-17 02:42:41] 2025-04-17 06:42:19,346 | INFO     | mean y: 2145787.64278297
[2025-04-17 02:42:41] 2025-04-17 06:42:19,346 | INFO     | -- intersect: -3966654783.2977757
[2025-04-17 02:42:41] 2025-04-17 06:42:19,346 | INFO     | intersect: -3966654783.2977757
[2025-04-17 02:42:41] 2025-04-17 06:42:19,364 | INFO     | chi2: 12.656148880757412
[2025-04-17 02:42:41] 2025-04-17 06:42:19,365 | INFO     | sum of square deviations: 272631310397.18646
[2025-04-17 02:42:41] 2025-04-17 06:42:19,449 | INFO     | sum of deviations: 886491678976.0928
[2025-04-17 02:42:41] 2025-04-17 06:42:19,449 | INFO     | mean x: 1744842582.1764092
[2025-04-17 02:42:41] 2025-04-17 06:42:19,450 | INFO     | mean y: 2154907.5970772444
[2025-04-17 02:42:41] 2025-04-17 06:42:19,450 | INFO     | -- intersect: -5671398977.204662
[2025-04-17 02:42:41] 2025-04-17 06:42:19,450 | INFO     | intersect: -5671398977.204662
[2025-04-17 02:42:41] 2025-04-17 06:42:19,501 | INFO     | chi2: 9.246634786587823
[2025-04-17 02:42:41] 2025-04-17 06:42:19,502 | INFO     | current chi2=9.246634786587823 (change=26.939585858961113 %)
[2025-04-17 02:42:41] 2025-04-17 06:42:19,503 | INFO     | sum of square deviations: 268384942191.74597
[2025-04-17 02:42:41] 2025-04-17 06:42:19,807 | INFO     | sum of deviations: 1003621379269.4283
[2025-04-17 02:42:41] 2025-04-17 06:42:19,807 | INFO     | mean x: 1744842429.6789088
[2025-04-17 02:42:41] 2025-04-17 06:42:19,807 | INFO     | mean y: 2159104.334732424
[2025-04-17 02:42:41] 2025-04-17 06:42:19,807 | INFO     | -- intersect: -6522652427.867624
[2025-04-17 02:42:41] 2025-04-17 06:42:19,808 | INFO     | intersect: -6522652427.867624
[2025-04-17 02:42:41] 2025-04-17 06:42:19,809 | INFO     | chi2: 7.831589162908171
[2025-04-17 02:42:41] 2025-04-17 06:42:19,809 | INFO     | current chi2=7.831589162908171 (change=15.303357992814485 %)
[2025-04-17 02:42:41] 2025-04-17 06:42:19,809 | INFO     | right removable region: 952
[2025-04-17 02:42:41] 2025-04-17 06:42:19,866 | INFO     | sum of square deviations: 272630973616.53625
[2025-04-17 02:42:41] 2025-04-17 06:42:20,017 | INFO     | sum of deviations: 398834845574.68976
[2025-04-17 02:42:41] 2025-04-17 06:42:20,017 | INFO     | mean x: 1744842887.1753654
[2025-04-17 02:42:41] 2025-04-17 06:42:20,017 | INFO     | mean y: 2153994.317327766
[2025-04-17 02:42:41] 2025-04-17 06:42:20,018 | INFO     | -- intersect: -2550395828.7174273
[2025-04-17 02:42:41] 2025-04-17 06:42:20,042 | INFO     | intersect: -2550395828.7174273
[2025-04-17 02:42:41] 2025-04-17 06:42:20,043 | INFO     | chi2: 9.828725328971894
[2025-04-17 02:42:41] 2025-04-17 06:42:20,044 | INFO     | current chi2=9.828725328971894 (change=22.340315197179557 %)
[2025-04-17 02:42:41] 2025-04-17 06:42:20,044 | INFO     | left removable region: 10
[2025-04-17 02:42:41] 2025-04-17 06:42:20,045 | INFO     | sum of square deviations: 259198087726.59467
[2025-04-17 02:42:41] 2025-04-17 06:42:20,247 | INFO     | sum of deviations: 620915372059.5645
[2025-04-17 02:42:41] 2025-04-17 06:42:20,247 | INFO     | mean x: 1744842704.1825902
[2025-04-17 02:42:41] 2025-04-17 06:42:20,270 | INFO     | mean y: 2173721.3513800423
[2025-04-17 02:42:41] 2025-04-17 06:42:20,270 | INFO     | -- intersect: -4177639742.379621
[2025-04-17 02:42:41] 2025-04-17 06:42:20,270 | INFO     | intersect: -4177639742.379621
[2025-04-17 02:42:41] 2025-04-17 06:42:20,272 | INFO     | chi2: 3.6439634572337365
[2025-04-17 02:42:41] 2025-04-17 06:42:20,314 | INFO     | -- intersect: -4177639742.379621
[2025-04-17 02:42:41] 2025-04-17 06:42:20,314 | INFO     | current memory leak: 2.40 B/s (using 942 data points, chi2=3.64)
[2025-04-17 02:42:41] 2025-04-17 06:42:20,315 | INFO     | ..............................
[2025-04-17 02:42:41] 2025-04-17 06:42:20,316 | INFO     | . Timing measurements:
[2025-04-17 02:42:41] 2025-04-17 06:42:20,316 | INFO     | . get job = 1 s
[2025-04-17 02:42:41] 2025-04-17 06:42:20,316 | INFO     | . initial setup = 9 s
[2025-04-17 02:42:41] 2025-04-17 06:42:20,316 | INFO     | . payload setup = 50 s
[2025-04-17 02:42:41] 2025-04-17 06:42:20,316 | INFO     | . stage-in = 0 s
[2025-04-17 02:42:41] 2025-04-17 06:42:20,316 | INFO     | . payload execution = 58747 s
[2025-04-17 02:42:41] 2025-04-17 06:42:20,316 | INFO     | . stage-out = 6 s
[2025-04-17 02:42:41] 2025-04-17 06:42:20,316 | INFO     | . log creation = 1 s
[2025-04-17 02:42:41] 2025-04-17 06:42:20,316 | INFO     | ..............................
[2025-04-17 02:42:41] 2025-04-17 06:42:20,889 | INFO     | 
[2025-04-17 02:42:41] 2025-04-17 06:42:20,889 | INFO     | job summary report
[2025-04-17 02:42:41] 2025-04-17 06:42:20,889 | INFO     | --------------------------------------------------
[2025-04-17 02:42:41] 2025-04-17 06:42:20,889 | INFO     | PanDA job id: 6603900731
[2025-04-17 02:42:41] 2025-04-17 06:42:20,889 | INFO     | task id: 44075483
[2025-04-17 02:42:41] 2025-04-17 06:42:20,890 | INFO     | errors: (none)
[2025-04-17 02:42:41] 2025-04-17 06:42:20,890 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-17 02:42:41] 2025-04-17 06:42:20,890 | INFO     | pilot state: finished 
[2025-04-17 02:42:41] 2025-04-17 06:42:20,890 | INFO     | transexitcode: 0
[2025-04-17 02:42:41] 2025-04-17 06:42:20,890 | INFO     | exeerrorcode: 0
[2025-04-17 02:42:41] 2025-04-17 06:42:20,890 | INFO     | exeerrordiag: 
[2025-04-17 02:42:41] 2025-04-17 06:42:20,890 | INFO     | exitcode: 0
[2025-04-17 02:42:41] 2025-04-17 06:42:20,890 | INFO     | exitmsg: OK
[2025-04-17 02:42:41] 2025-04-17 06:42:20,890 | INFO     | cpuconsumptiontime: 51603 s
[2025-04-17 02:42:41] 2025-04-17 06:42:20,890 | INFO     | nevents: 400
[2025-04-17 02:42:41] 2025-04-17 06:42:20,890 | INFO     | neventsw: 0
[2025-04-17 02:42:41] 2025-04-17 06:42:20,891 | INFO     | pid: 308553
[2025-04-17 02:42:41] 2025-04-17 06:42:20,891 | INFO     | pgrp: 308553
[2025-04-17 02:42:41] 2025-04-17 06:42:20,891 | INFO     | corecount: 10
[2025-04-17 02:42:41] 2025-04-17 06:42:20,891 | INFO     | event service: False
[2025-04-17 02:42:41] 2025-04-17 06:42:20,891 | INFO     | sizes: {0: 2417088, 1: 2417172, 2: 2417343, 3: 2417371, 4: 2417399, 15: 2417427, 27: 2417583, 39: 2417611, 51: 2417639, 57: 2417873, 63: 2417901, 58803: 2467566, 5
[2025-04-17 02:42:41] 2025-04-17 06:42:20,891 | INFO     | --------------------------------------------------
[2025-04-17 02:42:41] 2025-04-17 06:42:20,891 | INFO     | 
[2025-04-17 02:42:41] 2025-04-17 06:42:20,891 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-04-17 02:42:41] 2025-04-17 06:42:21,140 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-17 02:42:41] 2025-04-17 06:42:21,141 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-17 02:42:41] 2025-04-17 06:42:21,141 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-17 02:42:41] 2025-04-17 06:42:21,141 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-17 02:42:41] 2025-04-17 06:42:21,141 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-17 02:42:41] 2025-04-17 06:42:21,141 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-17 02:42:41] 2025-04-17 06:42:21,141 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-17 02:42:41] 2025-04-17 06:42:21,141 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-17 02:42:41] 2025-04-17 06:42:21,141 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-17 02:42:41] 2025-04-17 06:42:21,142 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-17 02:42:41] 2025-04-17 06:42:21,142 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-17 02:42:41] 2025-04-17 06:42:21,142 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-17 02:42:41] 2025-04-17 06:42:21,142 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-17 02:42:41] 2025-04-17 06:42:21,142 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-17 02:42:41] 2025-04-17 06:42:21,142 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-17 02:42:41] 2025-04-17 06:42:21,142 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-17 02:42:41] 2025-04-17 06:42:21,142 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-17 02:42:41] 2025-04-17 06:42:21,142 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-17 02:42:41] 2025-04-17 06:42:21,143 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-17 02:42:41] 2025-04-17 06:42:21,143 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-17 02:42:41] 2025-04-17 06:42:21,143 | INFO     | job 6603900731 has completed (purged errors)
[2025-04-17 02:42:41] 2025-04-17 06:42:21,143 | INFO     | overall cleanup function is called
[2025-04-17 02:42:41] 2025-04-17 06:42:22,209 | INFO     | --- collectZombieJob: --- 10, [308553]
[2025-04-17 02:42:41] 2025-04-17 06:42:22,209 | INFO     | zombie collector waiting for pid 308553
[2025-04-17 02:42:41] 2025-04-17 06:42:22,209 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-17 02:42:41] 2025-04-17 06:42:22,209 | INFO     | collected zombie processes
[2025-04-17 02:42:41] 2025-04-17 06:42:22,209 | INFO     | will attempt to kill all subprocesses of pid=308553
[2025-04-17 02:42:41] 2025-04-17 06:42:24,825 | INFO     | process IDs to be killed: [308553] (in reverse order)
[2025-04-17 02:42:41] 2025-04-17 06:42:25,152 | WARNING  | found no corresponding commands to process id(s)
[2025-04-17 02:42:41] 2025-04-17 06:42:25,152 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-17 02:42:41] 2025-04-17 06:42:25,208 | INFO     | did not find any defunct processes belonging to 308553
[2025-04-17 02:42:41] 2025-04-17 06:42:25,228 | INFO     | did not find any defunct processes belonging to 308553
[2025-04-17 02:42:41] 2025-04-17 06:42:25,228 | INFO     | ready for new job
[2025-04-17 02:42:41] 2025-04-17 06:42:25,229 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-17 02:42:41] 2025-04-17 06:42:25,231 | INFO     | **************************************
[2025-04-17 02:42:41] 2025-04-17 06:42:25,231 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-17 02:42:41] 2025-04-17 06:42:25,231 | INFO     | **************************************
[2025-04-17 02:42:41] 2025-04-17 06:42:25,231 | INFO     | 
[2025-04-17 02:42:41] 2025-04-17 06:42:25,245 | INFO     | architecture information:
[2025-04-17 02:42:41] 2025-04-17 06:42:25,249 | INFO     | executing command: cat /etc/os-release
[2025-04-17 02:42:41] 2025-04-17 06:42:25,430 | INFO     | cat /etc/os-release:
[2025-04-17 02:42:41] NAME="CentOS Linux"
[2025-04-17 02:42:41] VERSION="7 (Core)"
[2025-04-17 02:42:41] ID="centos"
[2025-04-17 02:42:41] ID_LIKE="rhel fedora"
[2025-04-17 02:42:41] VERSION_ID="7"
[2025-04-17 02:42:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-17 02:42:41] ANSI_COLOR="0;31"
[2025-04-17 02:42:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-17 02:42:41] HOME_URL="https://www.centos.org/"
[2025-04-17 02:42:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-17 02:42:41] 
[2025-04-17 02:42:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-17 02:42:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-17 02:42:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-17 02:42:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-17 02:42:41] 
[2025-04-17 02:42:41] 2025-04-17 06:42:25,431 | INFO     | **************************************
[2025-04-17 02:42:41] 2025-04-17 06:42:25,934 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-04-17 02:42:41] 2025-04-17 06:42:26,039 | INFO     | sufficient remaining disk space (73684484096 B)
[2025-04-17 02:42:41] 2025-04-17 06:42:26,040 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-17 02:42:41] 2025-04-17 06:42:26,040 | INFO     | current server update state: UPDATING_FINAL
[2025-04-17 02:42:41] 2025-04-17 06:42:26,040 | INFO     | update_server=False
[2025-04-17 02:42:41] 2025-04-17 06:42:26,040 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-17 02:42:41] 2025-04-17 06:42:26,040 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-17 02:42:41] 2025-04-17 06:42:26,120 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-17 02:42:41] 2025-04-17 06:42:26,238 | INFO     | found 0 job(s) in 20 queues
[2025-04-17 02:42:41] 2025-04-17 06:42:26,239 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-17 02:42:41] 2025-04-17 06:42:26,239 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-17 02:42:41] 2025-04-17 06:42:26,252 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-04-17 02:42:41] 2025-04-17 06:42:26,252 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-04-17 02:42:41] 2025-04-17 06:42:26,252 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-17 02:42:41] 2025-04-17 06:42:26,252 | INFO     | will abort loop
[2025-04-17 02:42:41] 2025-04-17 06:42:26,282 | INFO     | all payload control threads have been joined
[2025-04-17 02:42:41] 2025-04-17 06:42:26,356 | INFO     | all data control threads have been joined
[2025-04-17 02:42:41] 2025-04-17 06:42:27,055 | INFO     | [job] retrieve thread has finished
[2025-04-17 02:42:41] 2025-04-17 06:42:27,062 | INFO     | [job] queue monitor thread has finished
[2025-04-17 02:42:41] 2025-04-17 06:42:27,126 | INFO     | [job] validate thread has finished
[2025-04-17 02:42:41] 2025-04-17 06:42:27,130 | INFO     | [payload] execute_payloads thread has finished
[2025-04-17 02:42:41] 2025-04-17 06:42:27,198 | INFO     | [data] copytool_in thread has finished
[2025-04-17 02:42:41] 2025-04-17 06:42:27,284 | INFO     | [job] job monitor thread has finished
[2025-04-17 02:42:41] 2025-04-17 06:42:27,289 | INFO     | [payload] control thread has finished
[2025-04-17 02:42:41] 2025-04-17 06:42:27,319 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-17 02:42:41] 2025-04-17 06:42:27,320 | INFO     | [payload] validate_pre thread has finished
[2025-04-17 02:42:41] 2025-04-17 06:42:27,375 | INFO     | [data] control thread has finished
[2025-04-17 02:42:41] 2025-04-17 06:42:27,465 | INFO     | [job] create_data_payload thread has finished
[2025-04-17 02:42:41] 2025-04-17 06:42:27,784 | INFO     | all job control threads have been joined
[2025-04-17 02:42:41] 2025-04-17 06:42:28,001 | INFO     | [payload] validate_post thread has finished
[2025-04-17 02:42:41] 2025-04-17 06:42:28,127 | INFO     | [data] copytool_out thread has finished
[2025-04-17 02:42:41] 2025-04-17 06:42:28,576 | INFO     | [payload] failed_post thread has finished
[2025-04-17 02:42:41] 2025-04-17 06:42:28,790 | INFO     | [job] control thread has finished
[2025-04-17 02:42:41] 2025-04-17 06:42:28,967 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-17 02:42:41] 2025-04-17 06:42:32,976 | INFO     | [data] queue_monitor thread has finished
[2025-04-17 02:42:41] 2025-04-17 06:42:34,164 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140379632805696)>', '<ExcThread(monitor, started 140378388821760)>']
[2025-04-17 02:42:41] 2025-04-17 06:42:34,302 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-17 02:42:41] 2025-04-17 06:42:34,302 | INFO     | [monitor] control thread has ended
[2025-04-17 02:42:41] 2025-04-17 06:42:39,190 | INFO     | all workflow threads have been joined
[2025-04-17 02:42:41] 2025-04-17 06:42:39,190 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-17 02:42:41] 2025-04-17 06:42:39,190 | INFO     | traces error code: 0
[2025-04-17 02:42:41] 2025-04-17 06:42:39,191 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-17 02:42:41] 2025-04-17 06:42:39,922 [wrapper] ==== pilot stdout END ====
[2025-04-17 02:42:41] 2025-04-17 06:42:39,947 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-17 02:42:41] 2025-04-17 06:42:40,020 [wrapper] pilotpid: 283305
[2025-04-17 02:42:41] 2025-04-17 06:42:40,047 [wrapper] Pilot exit status: 0
[2025-04-17 02:42:41] 2025-04-17 06:42:40,241 [wrapper] pandaids: 6603900731
[2025-04-17 02:42:41] 2025-04-17 06:42:40,897 [wrapper] cleanup supervisor_pilot 2630632 283306
[2025-04-17 02:42:41] 2025-04-17 06:42:40,914 [wrapper] Test setup, not cleaning
[2025-04-17 02:42:41] 2025-04-17 06:42:40,919 [wrapper] apfmon messages muted
[2025-04-17 02:42:41] 2025-04-17 06:42:40,924 [wrapper] ==== wrapper stdout END ====
[2025-04-17 02:42:41] 2025-04-17 06:42:40,939 [wrapper] ==== wrapper stderr END ====
[2025-04-17 02:42:41]  *** Error codes and diagnostics ***
[2025-04-17 02:42:41]     "exeErrorCode": 0,
[2025-04-17 02:42:41]     "exeErrorDiag": "",
[2025-04-17 02:42:41]     "pilotErrorCode": 0,
[2025-04-17 02:42:41]     "pilotErrorDiag": "",
[2025-04-17 02:42:41]  *** Listing of results directory ***
[2025-04-17 02:42:42] total 426024
[2025-04-17 02:42:42] -rw-r--r--. 1 boincer umatlas      5111 Apr 16 06:43 queuedata.json
[2025-04-17 02:42:42] -rwx------. 1 boincer umatlas     37140 Apr 16 06:49 runpilot2-wrapper.sh
[2025-04-17 02:42:42] -rw-r--r--. 1 boincer umatlas    495897 Apr 16 06:49 pilot3.tar.gz
[2025-04-17 02:42:42] -rw-r--r--. 1 boincer umatlas       100 Apr 16 10:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-17 02:42:42] -rwxr-xr-x. 1 boincer umatlas      7986 Apr 16 10:17 run_atlas
[2025-04-17 02:42:42] -rw-r--r--. 1 boincer umatlas       105 Apr 16 10:17 job.xml
[2025-04-17 02:42:42] -rw-r--r--. 2 boincer umatlas 225004917 Apr 16 10:17 EVNT.44075481._001553.pool.root.1
[2025-04-17 02:42:42] -rw-r--r--. 2 boincer umatlas     17569 Apr 16 10:17 start_atlas.sh
[2025-04-17 02:42:42] drwxrwx--x. 2 boincer umatlas      4096 Apr 16 10:17 shared
[2025-04-17 02:42:42] -rw-r--r--. 2 boincer umatlas    508885 Apr 16 10:17 input.tar.gz
[2025-04-17 02:42:42] -rw-r--r--. 1 boincer umatlas         0 Apr 16 10:17 boinc_lockfile
[2025-04-17 02:42:42] -rw-r--r--. 1 boincer umatlas      2578 Apr 16 10:18 pandaJob.out
[2025-04-17 02:42:42] -rw-------. 1 boincer umatlas       467 Apr 16 10:18 setup.sh.local
[2025-04-17 02:42:42] -rw-------. 1 boincer umatlas    986552 Apr 16 10:19 agis_schedconf.cvmfs.json
[2025-04-17 02:42:42] drwx------. 4 boincer umatlas      4096 Apr 16 10:19 pilot3
[2025-04-17 02:42:42] -rw-------. 1 boincer umatlas 197345023 Apr 17 02:33 HITS.44075483._039583.pool.root.1
[2025-04-17 02:42:42] -rw-r--r--. 1 boincer umatlas       531 Apr 17 02:34 boinc_task_state.xml
[2025-04-17 02:42:42] -rw-r--r--. 1 boincer umatlas      6675 Apr 17 02:39 init_data.xml
[2025-04-17 02:42:42] -rw-------. 1 boincer umatlas      1050 Apr 17 02:41 memory_monitor_summary.json
[2025-04-17 02:42:42] -rw-------. 1 boincer umatlas   1603529 Apr 17 02:41 agis_ddmendpoints.agis.ALL.json
[2025-04-17 02:42:42] -rw-------. 1 boincer umatlas    763892 Apr 17 02:41 log.44075483._039583.job.log.tgz.1
[2025-04-17 02:42:42] -rw-------. 1 boincer umatlas        95 Apr 17 02:41 pilot_heartbeat.json
[2025-04-17 02:42:42] -rw-------. 1 boincer umatlas      7732 Apr 17 02:42 heartbeat.json
[2025-04-17 02:42:42] -rw-------. 1 boincer umatlas      4539 Apr 17 02:42 pilotlog.txt
[2025-04-17 02:42:42] -rw-r--r--. 1 boincer umatlas        28 Apr 17 02:42 wrapper_checkpoint.txt
[2025-04-17 02:42:42] -rw-r--r--. 1 boincer umatlas      8192 Apr 17 02:42 boinc_mmap_file
[2025-04-17 02:42:42] -rw-------. 1 boincer umatlas   4266757 Apr 17 02:42 log.44075483._039583.job.log.1
[2025-04-17 02:42:42] -rw-------. 1 boincer umatlas       357 Apr 17 02:42 output.list
[2025-04-17 02:42:42] -rw-r--r--. 1 boincer umatlas       620 Apr 17 02:42 runtime_log
[2025-04-17 02:42:42] -rw-------. 1 boincer umatlas   5048320 Apr 17 02:42 result.tar.gz
[2025-04-17 02:42:42] -rw-r--r--. 1 boincer umatlas     11411 Apr 17 02:42 runtime_log.err
[2025-04-17 02:42:42] -rw-------. 1 boincer umatlas       659 Apr 17 02:42 muNLDmzVFP7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmkBaLDmk8N0Io.diag
[2025-04-17 02:42:42] -rw-r--r--. 1 boincer umatlas     21246 Apr 17 02:42 stderr.txt
[2025-04-17 02:42:42] HITS file was successfully produced:
[2025-04-17 02:42:42] -rw-------. 1 boincer umatlas 197345023 Apr 17 02:33 shared/HITS.pool.root.1
[2025-04-17 02:42:42]  *** Contents of shared directory: ***
[2025-04-17 02:42:42] total 417908
[2025-04-17 02:42:42] -rw-r--r--. 2 boincer umatlas 225004917 Apr 16 10:17 ATLAS.root_0
[2025-04-17 02:42:42] -rw-r--r--. 2 boincer umatlas     17569 Apr 16 10:17 start_atlas.sh
[2025-04-17 02:42:42] -rw-r--r--. 2 boincer umatlas    508885 Apr 16 10:17 input.tar.gz
[2025-04-17 02:42:42] -rw-------. 1 boincer umatlas 197345023 Apr 17 02:33 HITS.pool.root.1
[2025-04-17 02:42:42] -rw-------. 1 boincer umatlas   5048320 Apr 17 02:42 result.tar.gz
02:42:43 (264977): run_atlas exited; CPU time 54579.558292
02:42:43 (264977): called boinc_finish(0)

</stderr_txt>
]]>

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