Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:51:42 (1019160): wrapper (7.7.26015): starting
16:51:42 (1019160): wrapper: running run_atlas (--nthreads 12)
[2025-04-16 16:51:42] Arguments: --nthreads 12
[2025-04-16 16:51:42] Threads: 12
[2025-04-16 16:51:42] Checking for CVMFS
[2025-04-16 16:51:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-16 16:51:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-16 16:51:42] Running cvmfs_config stat atlas.cern.ch
[2025-04-16 16:51:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-16 16:51:42] 2.11.5.0 3486 1650 58624 144927 3 56 3835273 4096001 0 130560 0 1972087 99.986 504188 3413 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-04-16 16:51:42] CVMFS is ok
[2025-04-16 16:51:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-16 16:51:42] Small home clusters do not require a local http proxy but it is suggested if
[2025-04-16 16:51:42] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-04-16 16:51:42] Further information can be found at the LHC@home message board.
[2025-04-16 16:51:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-16 16:51:42] Checking for apptainer binary...
[2025-04-16 16:51:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-16 16:51:42] Running /usr/bin/apptainer --version
[2025-04-16 16:51:42] apptainer version 1.3.6
[2025-04-16 16:51:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-16 16:51:43] subzero
[2025-04-16 16:51:43] apptainer works
[2025-04-16 16:51:43] Set ATHENA_PROC_NUMBER=12
[2025-04-16 16:51:43] Set ATHENA_CORE_NUMBER=12
[2025-04-16 16:51:43] Starting ATLAS job with PandaID=6603700719
[2025-04-16 16:51:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/david/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-16 17:40:58]  *** The last 200 lines of the pilot log: ***
[2025-04-16 17:40:58]  filetype=log
[2025-04-16 17:40:58]  guid=854d66da-f026-4153-8ba3-b15bc21aee96
[2025-04-16 17:40:58]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-04-16 17:40:58]  is_altstaged=None
[2025-04-16 17:40:58]  is_tar=False
[2025-04-16 17:40:58]  lfn=log.44075483._036144.job.log.tgz.1
[2025-04-16 17:40:58]  mtime=0
[2025-04-16 17:40:58]  protocol_id=None
[2025-04-16 17:40:58]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-16 17:40:58]  replicas=None
[2025-04-16 17:40:58]  scope=mc23_13p6TeV
[2025-04-16 17:40:58]  status=None
[2025-04-16 17:40:58]  status_code=0
[2025-04-16 17:40:58]  storage_token=
[2025-04-16 17:40:58]  surl=/home/david/boinc/slots/0/PanDA_Pilot-6603700719/log.44075483._036144.job.log.tgz.1
[2025-04-16 17:40:58]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d7/82/log.44075483._036144.job.log.tgz.1
[2025-04-16 17:40:58]  workdir=None
[2025-04-16 17:40:58] ]
[2025-04-16 17:40:58] 2025-04-16 15:40:34,867 | INFO     | transferring file log.44075483._036144.job.log.tgz.1 from /home/david/boinc/slots/0/PanDA_Pilot-6603700719/log.44075483._036144.job.log.tgz.1 to /home/david/boinc/
[2025-04-16 17:40:58] 2025-04-16 15:40:34,868 | INFO     | executing command: /usr/bin/env mv /home/david/boinc/slots/0/PanDA_Pilot-6603700719/log.44075483._036144.job.log.tgz.1 /home/david/boinc/slots/0/log.44075483._0361
[2025-04-16 17:40:58] 2025-04-16 15:40:34,877 | INFO     | adding to output.list: log.44075483._036144.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d7/82/log.44075483._036144.job.log.tg
[2025-04-16 17:40:58] 2025-04-16 15:40:34,877 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-16 17:40:58] 2025-04-16 15:40:34,877 | INFO     | summary of transferred files:
[2025-04-16 17:40:58] 2025-04-16 15:40:34,878 | INFO     |  -- lfn=log.44075483._036144.job.log.tgz.1, status_code=0, status=transferred
[2025-04-16 17:40:58] 2025-04-16 15:40:34,878 | INFO     | stage-out finished correctly
[2025-04-16 17:40:58] 2025-04-16 15:40:35,962 | INFO     | PID=1022850 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-04-16 17:40:58] 2025-04-16 15:40:36,161 | INFO     | monitor loop #225: job 0:6603700719 is in state 'finished'
[2025-04-16 17:40:58] 2025-04-16 15:40:36,161 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-16 17:40:58] 2025-04-16 15:40:37,068 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-16 17:40:58] 2025-04-16 15:40:37,827 | INFO     | job 6603700719 has state=finished
[2025-04-16 17:40:58] 2025-04-16 15:40:37,828 | INFO     | preparing for final server update for job 6603700719 in state='finished'
[2025-04-16 17:40:58] 2025-04-16 15:40:37,828 | INFO     | this job has now completed (state=finished)
[2025-04-16 17:40:58] 2025-04-16 15:40:37,828 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-16 17:40:58] 2025-04-16 15:40:37,828 | INFO     | log transfer has been attempted: DONE
[2025-04-16 17:40:58] 2025-04-16 15:40:37,828 | INFO     | job 6603700719 has finished - writing final server update
[2025-04-16 17:40:58] 2025-04-16 15:40:37,828 | INFO     | total number of processed events: 400 (read)
[2025-04-16 17:40:58] 2025-04-16 15:40:37,830 | INFO     | executing command: lscpu
[2025-04-16 17:40:58] 2025-04-16 15:40:37,844 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-16 17:40:58] 2025-04-16 15:40:38,664 | INFO     | monitor loop #226: job 0:6603700719 is in state 'finished'
[2025-04-16 17:40:58] 2025-04-16 15:40:38,664 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-16 17:40:58] 2025-04-16 15:40:39,732 | INFO     | CPU arch script returned: x86-64-v3
[2025-04-16 17:40:58] 2025-04-16 15:40:39,732 | INFO     | using path: /home/david/boinc/slots/0/PanDA_Pilot-6603700719/memory_monitor_summary.json (trf name=prmon)
[2025-04-16 17:40:58] 2025-04-16 15:40:39,733 | INFO     | extracted standard info from prmon json
[2025-04-16 17:40:58] 2025-04-16 15:40:39,733 | INFO     | extracted standard memory fields from prmon json
[2025-04-16 17:40:58] 2025-04-16 15:40:39,733 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-16 17:40:58] 2025-04-16 15:40:39,733 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-16 17:40:58] 2025-04-16 15:40:39,733 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-16 17:40:58] 2025-04-16 15:40:39,734 | INFO     | fitting pss+swap vs Time
[2025-04-16 17:40:58] 2025-04-16 15:40:39,734 | INFO     | sum of square deviations: 21358540.0
[2025-04-16 17:40:58] 2025-04-16 15:40:39,734 | INFO     | sum of deviations: 5849846198.0
[2025-04-16 17:40:58] 2025-04-16 15:40:39,734 | INFO     | mean x: 1744816651.0
[2025-04-16 17:40:58] 2025-04-16 15:40:39,734 | INFO     | mean y: 2668312.6585365855
[2025-04-16 17:40:58] 2025-04-16 15:40:39,734 | INFO     | -- intersect: -477881543438.6804
[2025-04-16 17:40:58] 2025-04-16 15:40:39,734 | INFO     | intersect: -477881543438.6804
[2025-04-16 17:40:58] 2025-04-16 15:40:39,734 | INFO     | chi2: 1.4629280286773854
[2025-04-16 17:40:58] 2025-04-16 15:40:39,734 | INFO     | -- intersect: -477881543438.6804
[2025-04-16 17:40:58] 2025-04-16 15:40:39,734 | INFO     | current memory leak: 273.89 B/s (using 41 data points, chi2=1.46)
[2025-04-16 17:40:58] 2025-04-16 15:40:39,734 | INFO     | ..............................
[2025-04-16 17:40:58] 2025-04-16 15:40:39,735 | INFO     | . Timing measurements:
[2025-04-16 17:40:58] 2025-04-16 15:40:39,735 | INFO     | . get job = 0 s
[2025-04-16 17:40:58] 2025-04-16 15:40:39,735 | INFO     | . initial setup = 1 s
[2025-04-16 17:40:58] 2025-04-16 15:40:39,735 | INFO     | . payload setup = 2 s
[2025-04-16 17:40:58] 2025-04-16 15:40:39,735 | INFO     | . stage-in = 0 s
[2025-04-16 17:40:58] 2025-04-16 15:40:39,735 | INFO     | . payload execution = 2906 s
[2025-04-16 17:40:58] 2025-04-16 15:40:39,735 | INFO     | . stage-out = 0 s
[2025-04-16 17:40:58] 2025-04-16 15:40:39,735 | INFO     | . log creation = 0 s
[2025-04-16 17:40:58] 2025-04-16 15:40:39,735 | INFO     | ..............................
[2025-04-16 17:40:58] 2025-04-16 15:40:39,774 | INFO     | 
[2025-04-16 17:40:58] 2025-04-16 15:40:39,774 | INFO     | job summary report
[2025-04-16 17:40:58] 2025-04-16 15:40:39,774 | INFO     | --------------------------------------------------
[2025-04-16 17:40:58] 2025-04-16 15:40:39,774 | INFO     | PanDA job id: 6603700719
[2025-04-16 17:40:58] 2025-04-16 15:40:39,774 | INFO     | task id: 44075483
[2025-04-16 17:40:58] 2025-04-16 15:40:39,774 | INFO     | errors: (none)
[2025-04-16 17:40:58] 2025-04-16 15:40:39,774 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-16 17:40:58] 2025-04-16 15:40:39,774 | INFO     | pilot state: finished 
[2025-04-16 17:40:58] 2025-04-16 15:40:39,774 | INFO     | transexitcode: 0
[2025-04-16 17:40:58] 2025-04-16 15:40:39,774 | INFO     | exeerrorcode: 0
[2025-04-16 17:40:58] 2025-04-16 15:40:39,774 | INFO     | exeerrordiag: 
[2025-04-16 17:40:58] 2025-04-16 15:40:39,774 | INFO     | exitcode: 0
[2025-04-16 17:40:58] 2025-04-16 15:40:39,774 | INFO     | exitmsg: OK
[2025-04-16 17:40:58] 2025-04-16 15:40:39,774 | INFO     | cpuconsumptiontime: 25670 s
[2025-04-16 17:40:58] 2025-04-16 15:40:39,774 | INFO     | nevents: 400
[2025-04-16 17:40:58] 2025-04-16 15:40:39,775 | INFO     | neventsw: 0
[2025-04-16 17:40:58] 2025-04-16 15:40:39,775 | INFO     | pid: 1029385
[2025-04-16 17:40:58] 2025-04-16 15:40:39,775 | INFO     | pgrp: 1029385
[2025-04-16 17:40:58] 2025-04-16 15:40:39,775 | INFO     | corecount: 12
[2025-04-16 17:40:58] 2025-04-16 15:40:39,775 | INFO     | event service: False
[2025-04-16 17:40:58] 2025-04-16 15:40:39,775 | INFO     | sizes: {0: 2417318, 2: 2417524, 11: 2417552, 2912: 2442911, 2914: 2451858, 2916: 2451914, 2919: 2452212}
[2025-04-16 17:40:58] 2025-04-16 15:40:39,775 | INFO     | --------------------------------------------------
[2025-04-16 17:40:58] 2025-04-16 15:40:39,775 | INFO     | 
[2025-04-16 17:40:58] 2025-04-16 15:40:39,775 | INFO     | executing command: ls -lF /home/david/boinc/slots/0
[2025-04-16 17:40:58] 2025-04-16 15:40:39,785 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-16 17:40:58] 2025-04-16 15:40:39,785 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-16 17:40:58] 2025-04-16 15:40:39,785 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-16 17:40:58] 2025-04-16 15:40:39,785 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-16 17:40:58] 2025-04-16 15:40:39,785 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-16 17:40:58] 2025-04-16 15:40:39,785 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-16 17:40:58] 2025-04-16 15:40:39,785 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-16 17:40:58] 2025-04-16 15:40:39,785 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-16 17:40:58] 2025-04-16 15:40:39,785 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-16 17:40:58] 2025-04-16 15:40:39,785 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-16 17:40:58] 2025-04-16 15:40:39,786 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-16 17:40:58] 2025-04-16 15:40:39,786 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-16 17:40:58] 2025-04-16 15:40:39,786 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-16 17:40:58] 2025-04-16 15:40:39,786 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-16 17:40:58] 2025-04-16 15:40:39,786 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-16 17:40:58] 2025-04-16 15:40:39,786 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-16 17:40:58] 2025-04-16 15:40:39,786 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-16 17:40:58] 2025-04-16 15:40:39,786 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-16 17:40:58] 2025-04-16 15:40:39,786 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-16 17:40:58] 2025-04-16 15:40:39,786 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-16 17:40:58] 2025-04-16 15:40:39,786 | INFO     | job 6603700719 has completed (purged errors)
[2025-04-16 17:40:58] 2025-04-16 15:40:39,786 | INFO     | overall cleanup function is called
[2025-04-16 17:40:58] 2025-04-16 15:40:40,793 | INFO     | --- collectZombieJob: --- 10, [1029385]
[2025-04-16 17:40:58] 2025-04-16 15:40:40,794 | INFO     | zombie collector waiting for pid 1029385
[2025-04-16 17:40:58] 2025-04-16 15:40:40,794 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-16 17:40:58] 2025-04-16 15:40:40,794 | INFO     | collected zombie processes
[2025-04-16 17:40:58] 2025-04-16 15:40:40,794 | INFO     | will attempt to kill all subprocesses of pid=1029385
[2025-04-16 17:40:58] 2025-04-16 15:40:40,877 | INFO     | process IDs to be killed: [1029385] (in reverse order)
[2025-04-16 17:40:58] 2025-04-16 15:40:40,903 | WARNING  | found no corresponding commands to process id(s)
[2025-04-16 17:40:58] 2025-04-16 15:40:40,903 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-16 17:40:58] 2025-04-16 15:40:40,905 | INFO     | did not find any defunct processes belonging to 1029385
[2025-04-16 17:40:58] 2025-04-16 15:40:40,907 | INFO     | did not find any defunct processes belonging to 1029385
[2025-04-16 17:40:58] 2025-04-16 15:40:40,907 | INFO     | ready for new job
[2025-04-16 17:40:58] 2025-04-16 15:40:40,907 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-16 17:40:58] 2025-04-16 15:40:40,908 | INFO     | **************************************
[2025-04-16 17:40:58] 2025-04-16 15:40:40,908 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-16 17:40:58] 2025-04-16 15:40:40,908 | INFO     | **************************************
[2025-04-16 17:40:58] 2025-04-16 15:40:40,908 | INFO     | 
[2025-04-16 17:40:58] 2025-04-16 15:40:40,908 | INFO     | architecture information:
[2025-04-16 17:40:58] 2025-04-16 15:40:40,908 | INFO     | executing command: cat /etc/os-release
[2025-04-16 17:40:58] 2025-04-16 15:40:40,916 | INFO     | cat /etc/os-release:
[2025-04-16 17:40:58] NAME="CentOS Linux"
[2025-04-16 17:40:58] VERSION="7 (Core)"
[2025-04-16 17:40:58] ID="centos"
[2025-04-16 17:40:58] ID_LIKE="rhel fedora"
[2025-04-16 17:40:58] VERSION_ID="7"
[2025-04-16 17:40:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-16 17:40:58] ANSI_COLOR="0;31"
[2025-04-16 17:40:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-16 17:40:58] HOME_URL="https://www.centos.org/"
[2025-04-16 17:40:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-16 17:40:58] 
[2025-04-16 17:40:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-16 17:40:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-16 17:40:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-16 17:40:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-16 17:40:58] 
[2025-04-16 17:40:58] 2025-04-16 15:40:40,916 | INFO     | **************************************
[2025-04-16 17:40:58] 2025-04-16 15:40:41,419 | INFO     | executing command: df -mP /home/david/boinc/slots/0
[2025-04-16 17:40:58] 2025-04-16 15:40:41,426 | INFO     | sufficient remaining disk space (239937257472 B)
[2025-04-16 17:40:58] 2025-04-16 15:40:41,426 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-16 17:40:58] 2025-04-16 15:40:41,426 | INFO     | current server update state: UPDATING_FINAL
[2025-04-16 17:40:58] 2025-04-16 15:40:41,426 | INFO     | update_server=False
[2025-04-16 17:40:58] 2025-04-16 15:40:41,426 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-16 17:40:58] 2025-04-16 15:40:41,426 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-16 17:40:58] 2025-04-16 15:40:41,431 | INFO     | all job control threads have been joined
[2025-04-16 17:40:58] 2025-04-16 15:40:41,801 | INFO     | all payload control threads have been joined
[2025-04-16 17:40:58] 2025-04-16 15:40:41,976 | INFO     | found 0 job(s) in 20 queues
[2025-04-16 17:40:58] 2025-04-16 15:40:41,976 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-16 17:40:58] 2025-04-16 15:40:41,976 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-16 17:40:58] 2025-04-16 15:40:42,171 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-16 17:40:58] 2025-04-16 15:40:42,171 | INFO     | aborting loop
[2025-04-16 17:40:58] 2025-04-16 15:40:42,431 | INFO     | [job] retrieve thread has finished
[2025-04-16 17:40:58] 2025-04-16 15:40:42,431 | INFO     | [job] queue monitor thread has finished
[2025-04-16 17:40:58] 2025-04-16 15:40:42,434 | INFO     | [job] control thread has finished
[2025-04-16 17:40:58] 2025-04-16 15:40:42,478 | INFO     | all data control threads have been joined
[2025-04-16 17:40:58] 2025-04-16 15:40:42,806 | INFO     | [payload] control thread has finished
[2025-04-16 17:40:58] 2025-04-16 15:40:42,844 | INFO     | [payload] execute_payloads thread has finished
[2025-04-16 17:40:58] 2025-04-16 15:40:42,920 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-16 17:40:58] 2025-04-16 15:40:43,107 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-16 17:40:58] 2025-04-16 15:40:43,148 | INFO     | [job] validate thread has finished
[2025-04-16 17:40:58] 2025-04-16 15:40:43,174 | INFO     | [job] job monitor thread has finished
[2025-04-16 17:40:58] 2025-04-16 15:40:43,228 | INFO     | [job] create_data_payload thread has finished
[2025-04-16 17:40:58] 2025-04-16 15:40:43,232 | INFO     | [payload] validate_pre thread has finished
[2025-04-16 17:40:58] 2025-04-16 15:40:43,425 | INFO     | [payload] failed_post thread has finished
[2025-04-16 17:40:58] 2025-04-16 15:40:43,483 | INFO     | [data] control thread has finished
[2025-04-16 17:40:58] 2025-04-16 15:40:43,798 | INFO     | [data] copytool_in thread has finished
[2025-04-16 17:40:58] 2025-04-16 15:40:43,909 | INFO     | [payload] validate_post thread has finished
[2025-04-16 17:40:58] 2025-04-16 15:40:44,925 | INFO     | [data] copytool_out thread has finished
[2025-04-16 17:40:58] 2025-04-16 15:40:47,111 | INFO     | [data] queue_monitor thread has finished
[2025-04-16 17:40:58] 2025-04-16 15:40:52,105 | INFO     | job.realtimelogging is not enabled
[2025-04-16 17:40:58] 2025-04-16 15:40:53,108 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-16 17:40:58] 2025-04-16 15:40:53,244 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140170910054208)>', '<ExcThread(monitor, started 140170275841792)>']
[2025-04-16 17:40:58] 2025-04-16 15:40:54,019 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-16 17:40:58] 2025-04-16 15:40:54,019 | INFO     | [monitor] control thread has ended
[2025-04-16 17:40:58] 2025-04-16 15:40:58,261 | INFO     | all workflow threads have been joined
[2025-04-16 17:40:58] 2025-04-16 15:40:58,261 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-16 17:40:58] 2025-04-16 15:40:58,261 | INFO     | traces error code: 0
[2025-04-16 17:40:58] 2025-04-16 15:40:58,261 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-16 17:40:58] 2025-04-16 15:40:58,307 [wrapper] ==== pilot stdout END ====
[2025-04-16 17:40:58] 2025-04-16 15:40:58,308 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-16 17:40:58] 2025-04-16 15:40:58,310 [wrapper] pilotpid: 1022850
[2025-04-16 17:40:58] 2025-04-16 15:40:58,311 [wrapper] Pilot exit status: 0
[2025-04-16 17:40:58] 2025-04-16 15:40:58,317 [wrapper] pandaids: 6603700719
[2025-04-16 17:40:58] 2025-04-16 15:40:58,335 [wrapper] cleanup supervisor_pilot 1044271 1022851
[2025-04-16 17:40:58] 2025-04-16 15:40:58,336 [wrapper] Test setup, not cleaning
[2025-04-16 17:40:58] 2025-04-16 15:40:58,338 [wrapper] apfmon messages muted
[2025-04-16 17:40:58] 2025-04-16 15:40:58,340 [wrapper] ==== wrapper stdout END ====
[2025-04-16 17:40:58] 2025-04-16 15:40:58,341 [wrapper] ==== wrapper stderr END ====
[2025-04-16 17:40:58]  *** Error codes and diagnostics ***
[2025-04-16 17:40:58]     "exeErrorCode": 0,
[2025-04-16 17:40:58]     "exeErrorDiag": "",
[2025-04-16 17:40:58]     "pilotErrorCode": 0,
[2025-04-16 17:40:58]     "pilotErrorDiag": "",
[2025-04-16 17:40:58]  *** Listing of results directory ***
[2025-04-16 17:40:58] total 421116
[2025-04-16 17:40:58] -rw-r--r-- 1 david david    495897 Apr 16 06:41 pilot3.tar.gz
[2025-04-16 17:40:58] -rw-r--r-- 1 david david      5111 Apr 16 06:59 queuedata.json
[2025-04-16 17:40:58] -rwx------ 1 david david     37140 Apr 16 06:59 runpilot2-wrapper.sh
[2025-04-16 17:40:58] -rw-r--r-- 1 david david       100 Apr 16 16:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-16 17:40:58] -rwxr-xr-x 1 david david      7986 Apr 16 16:51 run_atlas
[2025-04-16 17:40:58] -rw-r--r-- 1 david david       105 Apr 16 16:51 job.xml
[2025-04-16 17:40:58] -rw-r--r-- 2 david david     17569 Apr 16 16:51 start_atlas.sh
[2025-04-16 17:40:58] drwxrwx--x 1 david david        76 Apr 16 16:51 shared
[2025-04-16 17:40:58] -rw-r--r-- 2 david david    508895 Apr 16 16:51 input.tar.gz
[2025-04-16 17:40:58] -rw-r--r-- 1 david david      7528 Apr 16 16:51 init_data.xml
[2025-04-16 17:40:58] -rw-r--r-- 2 david david 224075727 Apr 16 16:51 EVNT.44075481._001419.pool.root.1
[2025-04-16 17:40:58] -rw-r--r-- 1 david david         0 Apr 16 16:51 boinc_setup_complete
[2025-04-16 17:40:58] -rw-r--r-- 1 david david         0 Apr 16 16:51 boinc_lockfile
[2025-04-16 17:40:58] -rw-r--r-- 1 david david      2578 Apr 16 16:51 pandaJob.out
[2025-04-16 17:40:58] -rw------- 1 david david       424 Apr 16 16:51 setup.sh.local
[2025-04-16 17:40:58] -rw------- 1 david david    986552 Apr 16 16:51 agis_schedconf.cvmfs.json
[2025-04-16 17:40:58] -rw------- 1 david david   1603529 Apr 16 16:51 agis_ddmendpoints.agis.ALL.json
[2025-04-16 17:40:58] drwx------ 1 david david       368 Apr 16 16:51 pilot3
[2025-04-16 17:40:58] -rw------- 1 david david        95 Apr 16 17:40 pilot_heartbeat.json
[2025-04-16 17:40:58] -rw-r--r-- 1 david david       529 Apr 16 17:40 boinc_task_state.xml
[2025-04-16 17:40:58] -rw------- 1 david david 201985787 Apr 16 17:40 HITS.44075483._036144.pool.root.1
[2025-04-16 17:40:58] -rw------- 1 david david      1019 Apr 16 17:40 memory_monitor_summary.json
[2025-04-16 17:40:58] -rw------- 1 david david    362826 Apr 16 17:40 log.44075483._036144.job.log.tgz.1
[2025-04-16 17:40:58] -rw-r--r-- 1 david david        27 Apr 16 17:40 wrapper_checkpoint.txt
[2025-04-16 17:40:58] -rw-r--r-- 1 david david      8192 Apr 16 17:40 boinc_mmap_file
[2025-04-16 17:40:58] -rw------- 1 david david      7654 Apr 16 17:40 heartbeat.json
[2025-04-16 17:40:58] -rw------- 1 david david      4429 Apr 16 17:40 pilotlog.txt
[2025-04-16 17:40:58] -rw------- 1 david david    309674 Apr 16 17:40 log.44075483._036144.job.log.1
[2025-04-16 17:40:58] -rw------- 1 david david       357 Apr 16 17:40 output.list
[2025-04-16 17:40:58] -rw-r--r-- 1 david david       620 Apr 16 17:40 runtime_log
[2025-04-16 17:40:58] -rw------- 1 david david    686080 Apr 16 17:40 result.tar.gz
[2025-04-16 17:40:58] -rw-r--r-- 1 david david     11014 Apr 16 17:40 runtime_log.err
[2025-04-16 17:40:58] -rw------- 1 david david       639 Apr 16 17:40 8gjMDmS39O7n9Rq4apOajLDm4fhM0noT9bVoFjIUDm3A2KDmYmk9hn.diag
[2025-04-16 17:40:58] -rw-r--r-- 1 david david     21338 Apr 16 17:40 stderr.txt
[2025-04-16 17:40:58] HITS file was successfully produced:
[2025-04-16 17:40:58] -rw------- 1 david david 201985787 Apr 16 17:40 shared/HITS.pool.root.1
[2025-04-16 17:40:58]  *** Contents of shared directory: ***
[2025-04-16 17:40:58] total 417268
[2025-04-16 17:40:58] -rw-r--r-- 2 david david     17569 Apr 16 16:51 start_atlas.sh
[2025-04-16 17:40:58] -rw-r--r-- 2 david david    508895 Apr 16 16:51 input.tar.gz
[2025-04-16 17:40:58] -rw-r--r-- 2 david david 224075727 Apr 16 16:51 ATLAS.root_0
[2025-04-16 17:40:58] -rw------- 1 david david 201985787 Apr 16 17:40 HITS.pool.root.1
[2025-04-16 17:40:58] -rw------- 1 david david    686080 Apr 16 17:40 result.tar.gz
17:40:59 (1019160): run_atlas exited; CPU time 25672.257555
17:40:59 (1019160): called boinc_finish(0)

</stderr_txt>
]]>

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