Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-16 12:18:51 (5548): Detected: vboxwrapper 26206
2025-04-16 12:18:51 (5548): Detected: BOINC client v8.0.2
2025-04-16 12:18:51 (5548): Detected: VirtualBox VboxManage Interface (Version: 7.0.22)
2025-04-16 12:18:51 (5548): Successfully copied 'init_data.xml' to the shared directory.
2025-04-16 12:18:52 (5548): Create VM. (boinc_b70d73b4c1073c07, slot#1)
2025-04-16 12:18:52 (5548): Setting Memory Size for VM. (4400MB)
2025-04-16 12:18:53 (5548): Setting CPU Count for VM. (4)
2025-04-16 12:18:53 (5548): Setting Chipset Options for VM.
2025-04-16 12:18:53 (5548): Setting Graphics Controller Options for VM.
2025-04-16 12:18:53 (5548): Setting Boot Options for VM.
2025-04-16 12:18:54 (5548): Setting Network Configuration for NAT.
2025-04-16 12:18:54 (5548): Enabling VM Network Access.
2025-04-16 12:18:54 (5548): Disabling USB Support for VM.
2025-04-16 12:18:55 (5548): Disabling COM Port Support for VM.
2025-04-16 12:18:55 (5548): Disabling LPT Port Support for VM.
2025-04-16 12:18:55 (5548): Disabling Audio Support for VM.
2025-04-16 12:18:55 (5548): Disabling Clipboard Support for VM.
2025-04-16 12:18:56 (5548): Disabling Drag and Drop Support for VM.
2025-04-16 12:18:56 (5548): Adding storage controller(s) to VM.
2025-04-16 12:18:56 (5548): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-16 12:18:57 (5548): Adding VirtualBox Guest Additions to VM.
2025-04-16 12:18:57 (5548): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-16 12:18:57 (5548): forwarding host port 58997 to guest port 80
2025-04-16 12:18:57 (5548): Enabling remote desktop for VM.
2025-04-16 12:18:58 (5548): Required extension pack not installed, remote desktop not enabled.
2025-04-16 12:18:58 (5548): Enabling shared directory for VM.
2025-04-16 12:18:58 (5548): Starting VM using VBoxManage interface. (boinc_b70d73b4c1073c07, slot#1)
2025-04-16 12:19:04 (5548): Successfully started VM. (PID = '6456')
2025-04-16 12:19:04 (5548): Reporting VM Process ID to BOINC.
2025-04-16 12:19:04 (5548): Guest Log: BIOS: VirtualBox 7.0.22
2025-04-16 12:19:04 (5548): Guest Log: CPUID EDX: 0x178bfbff
2025-04-16 12:19:04 (5548): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-16 12:19:04 (5548): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-16 12:19:04 (5548): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-16 12:19:04 (5548): Detected: Web Application Enabled (http://localhost:58997)
2025-04-16 12:19:04 (5548): Preference change detected
2025-04-16 12:19:04 (5548): Setting CPU throttle for VM. (100%)
2025-04-16 12:19:04 (5548): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-16 12:19:06 (5548): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-16 12:19:06 (5548): Guest Log: BIOS: Booting from Hard Disk...
2025-04-16 12:19:09 (5548): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-16 12:19:09 (5548): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-16 12:19:09 (5548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-16 12:19:09 (5548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-16 12:19:09 (5548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-16 12:19:09 (5548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-16 12:19:09 (5548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-16 12:19:09 (5548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-16 12:19:09 (5548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-16 12:19:09 (5548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-16 12:19:09 (5548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-16 12:19:09 (5548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-16 12:19:09 (5548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-16 12:19:09 (5548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-16 12:19:09 (5548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-16 12:19:09 (5548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-16 12:19:09 (5548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-16 12:19:09 (5548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-16 12:19:09 (5548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-16 12:19:09 (5548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-16 12:19:09 (5548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-16 12:19:09 (5548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-16 12:19:09 (5548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-16 12:19:09 (5548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-16 12:19:09 (5548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-16 12:19:09 (5548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-16 12:19:09 (5548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-16 12:19:09 (5548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-16 12:19:09 (5548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-16 12:19:09 (5548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-16 12:19:09 (5548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-16 12:19:09 (5548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-16 12:19:16 (5548): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-16 12:19:16 (5548): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-16 12:19:24 (5548): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-16 12:19:24 (5548): Guest Log: 00:00:00.000165 main     Log opened 2025-04-16T12:19:22.131380000Z
2025-04-16 12:19:24 (5548): Guest Log: 00:00:00.000305 main     OS Product: Linux
2025-04-16 12:19:24 (5548): Guest Log: 00:00:00.000352 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-16 12:19:24 (5548): Guest Log: 00:00:00.000394 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-16 12:19:24 (5548): Guest Log: 00:00:00.000432 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-16 12:19:24 (5548): Guest Log: 00:00:00.000434 main     Process ID: 1307
2025-04-16 12:19:24 (5548): Guest Log: 00:00:00.000434 main     Package type: LINUX_64BITS_GENERIC
2025-04-16 12:19:24 (5548): Guest Log: 00:00:00.001441 main     5.2.32 r132073 started. Verbose level = 0
2025-04-16 12:19:24 (5548): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-16 12:19:24 (5548): Guest Log: [INFO] Mounting shared directory
2025-04-16 12:19:24 (5548): Guest Log: [INFO] Checking for init_data.xml
2025-04-16 12:19:34 (5548): Guest Log: 00:00:10.005790 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 447 195 000ns (GuestNow=1 744 823 973 581 582 000 ns GuestLast=1 744 805 962 134 387 000 ns fSetTimeLastLoop=true )
2025-04-16 12:19:35 (5548): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-16 12:19:35 (5548): Guest Log: [INFO] Detected branch: prod
2025-04-16 12:19:35 (5548): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-16 12:19:35 (5548): Guest Log: Copying input files
2025-04-16 12:19:38 (5548): Guest Log: Copied input files into RunAtlas.
2025-04-16 12:19:38 (5548): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-16 12:19:38 (5548): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-16 12:19:38 (5548): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-16 12:19:38 (5548): Guest Log: Further information can be found at the LHC@home message board.
2025-04-16 12:19:50 (5548): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-16 12:19:51 (5548): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-16 12:19:51 (5548): Guest Log: 2.6.3.0 1587 0 30156 144933 4 1 3117322 4096000 0 65024 0 0 n/a 1 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-16 12:19:52 (5548): Guest Log: copied the webapp to /var/www
2025-04-16 12:19:52 (5548): Guest Log: ATHENA_PROC_NUMBER=4
2025-04-16 12:19:52 (5548): Guest Log: ATHENA_CORE_NUMBER=4
2025-04-16 12:19:53 (5548): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-16 12:19:53 (5548): Guest Log:  *** Starting ATLAS job. (PandaID=6603823835 taskID=44075483) ***
2025-04-16 13:59:07 (5548): Status Report: Elapsed Time: '6000.000000'
2025-04-16 13:59:07 (5548): Status Report: CPU Time: '17490.375000'
2025-04-16 15:39:10 (5548): Status Report: Elapsed Time: '12000.000000'
2025-04-16 15:39:10 (5548): Status Report: CPU Time: '40683.812500'
2025-04-16 15:41:37 (5548): Guest Log:  *** Job finished ***
2025-04-16 15:41:37 (5548): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-16 15:41:37 (5548): Guest Log: 2025-04-16 20:41:19,230 | INFO     | [payload] failed_post thread has finished
2025-04-16 15:41:37 (5548): Guest Log: 2025-04-16 20:41:19,945 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-04-16 15:41:37 (5548): Guest Log: 2025-04-16 20:41:24,103 | INFO     | [data] queue_monitor thread has finished
2025-04-16 15:41:37 (5548): Guest Log: 2025-04-16 20:41:25,726 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140661557647168)>', '<ExcThread(monitor, started 140660799674112)>']
2025-04-16 15:41:37 (5548): Guest Log: 2025-04-16 20:41:26,169 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-16 15:41:37 (5548): Guest Log: 2025-04-16 20:41:26,169 | INFO     | [monitor] control thread has ended
2025-04-16 15:41:37 (5548): Guest Log: 2025-04-16 20:41:30,730 | INFO     | all workflow threads have been joined
2025-04-16 15:41:37 (5548): Guest Log: 2025-04-16 20:41:30,730 | INFO     | end of generic workflow (traces error code: 0)
2025-04-16 15:41:37 (5548): Guest Log: 2025-04-16 20:41:30,730 | INFO     | traces error code: 0
2025-04-16 15:41:37 (5548): Guest Log: 2025-04-16 20:41:30,730 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-16 15:41:37 (5548): Guest Log: 2025-04-16 20:41:30,824 [wrapper] ==== pilot stdout END ====
2025-04-16 15:41:37 (5548): Guest Log: 2025-04-16 20:41:30,830 [wrapper] ==== wrapper stdout RESUME ====
2025-04-16 15:41:37 (5548): Guest Log: 2025-04-16 20:41:30,836 [wrapper] pilotpid: 5946
2025-04-16 15:41:37 (5548): Guest Log: 2025-04-16 20:41:30,843 [wrapper] Pilot exit status: 0
2025-04-16 15:41:37 (5548): Guest Log: 2025-04-16 20:41:31,589 [wrapper] pandaids: 6603823835
2025-04-16 15:41:37 (5548): Guest Log: 2025-04-16 20:41:31,627 [wrapper] cleanup supervisor_pilot 11047 5947
2025-04-16 15:41:37 (5548): Guest Log: 2025-04-16 20:41:31,633 [wrapper] Test setup, not cleaning
2025-04-16 15:41:37 (5548): Guest Log: 2025-04-16 20:41:31,639 [wrapper] apfmon messages muted
2025-04-16 15:41:37 (5548): Guest Log: 2025-04-16 20:41:31,646 [wrapper] ==== wrapper stdout END ====
2025-04-16 15:41:37 (5548): Guest Log: 2025-04-16 20:41:31,651 [wrapper] ==== wrapper stderr END ====
2025-04-16 15:41:37 (5548): Guest Log:  *** Error codes and diagnostics ***
2025-04-16 15:41:37 (5548): Guest Log:     "exeErrorCode": 0,
2025-04-16 15:41:37 (5548): Guest Log:     "exeErrorDiag": "",
2025-04-16 15:41:37 (5548): Guest Log:     "pilotErrorCode": 0,
2025-04-16 15:41:37 (5548): Guest Log:     "pilotErrorDiag": "",
2025-04-16 15:41:37 (5548): Guest Log:  *** Listing of results directory ***
2025-04-16 15:41:37 (5548): Guest Log: total 196680
2025-04-16 15:41:37 (5548): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 16 07:44 pilot3.tar.gz
2025-04-16 15:41:37 (5548): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 16 08:11 runpilot2-wrapper.sh
2025-04-16 15:41:37 (5548): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 16 08:11 queuedata.json
2025-04-16 15:41:37 (5548): Guest Log: -rwxr-xr-x. 1 atlas atlas      9140 Apr 16 17:19 init_data.xml
2025-04-16 15:41:37 (5548): Guest Log: -rwxr-xr-x. 1 atlas atlas    508896 Apr 16 17:19 input.tar.gz
2025-04-16 15:41:37 (5548): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 16 17:19 start_atlas.sh
2025-04-16 15:41:37 (5548): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 16 17:19 EVNT.44075481._000330.pool.root.1 -> /data/./ATLAS.root_0
2025-04-16 15:41:37 (5548): Guest Log: -rw-r--r--. 1 atlas atlas      2575 Apr 16 17:19 pandaJob.out
2025-04-16 15:41:37 (5548): Guest Log: -rw-------. 1 atlas atlas       424 Apr 16 17:20 setup.sh.local
2025-04-16 15:41:37 (5548): Guest Log: -rw-------. 1 atlas atlas    986560 Apr 16 17:23 agis_schedconf.cvmfs.json
2025-04-16 15:41:37 (5548): Guest Log: drwx------. 4 atlas atlas      4096 Apr 16 17:24 pilot3
2025-04-16 15:41:37 (5548): Guest Log: -rw-------. 1 atlas atlas 194980023 Apr 16 20:40 HITS.44075483._037892.pool.root.1
2025-04-16 15:41:37 (5548): Guest Log: -rw-------. 1 atlas atlas      1030 Apr 16 20:40 memory_monitor_summary.json
2025-04-16 15:41:37 (5548): Guest Log: -rw-------. 1 atlas atlas        95 Apr 16 20:40 pilot_heartbeat.json
2025-04-16 15:41:37 (5548): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 16 20:41 agis_ddmendpoints.agis.ALL.json
2025-04-16 15:41:37 (5548): Guest Log: -rw-------. 1 atlas atlas    308608 Apr 16 20:41 log.44075483._037892.job.log.tgz.1
2025-04-16 15:41:37 (5548): Guest Log: -rw-------. 1 atlas atlas      7719 Apr 16 20:41 heartbeat.json
2025-04-16 15:41:37 (5548): Guest Log: -rw-------. 1 atlas atlas      4413 Apr 16 20:41 pilotlog.txt
2025-04-16 15:41:37 (5548): Guest Log: -rw-------. 1 atlas atlas   1012955 Apr 16 20:41 log.44075483._037892.job.log.1
2025-04-16 15:41:37 (5548): Guest Log: -rw-------. 1 atlas atlas       357 Apr 16 20:41 output.list
2025-04-16 15:41:37 (5548): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 16 20:41 runtime_log
2025-04-16 15:41:37 (5548): Guest Log: -rw-------. 1 atlas atlas   1341440 Apr 16 20:41 result.tar.gz
2025-04-16 15:41:37 (5548): Guest Log: -rw-r--r--. 1 atlas atlas     10951 Apr 16 20:41 runtime_log.err
2025-04-16 15:41:37 (5548): Guest Log: -rw-------. 1 atlas atlas       661 Apr 16 20:41 gpIMDmB3CP7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmquZLDm1ECkOm.diag
2025-04-16 15:41:37 (5548): Guest Log: Looking for outputfile HITS.44075483._037892.pool.root.1
2025-04-16 15:41:37 (5548): Guest Log: HITS file was successfully produced
2025-04-16 15:41:37 (5548): Guest Log: -rw-------. 1 atlas atlas 194980023 Apr 16 20:40 /home/atlas/RunAtlas/HITS.44075483._037892.pool.root.1
2025-04-16 15:41:39 (5548): Guest Log: Successfully finished the ATLAS job!
2025-04-16 15:41:39 (5548): Guest Log: Copying the results back to the shared directory!
2025-04-16 15:41:39 (5548): Guest Log:  *** Contents of shared directory: ***
2025-04-16 15:41:39 (5548): Guest Log: total 408176
2025-04-16 15:41:39 (5548): Guest Log: -rwxrwxrwx. 1 root root 221099742 Apr 16 17:18 ATLAS.root_0
2025-04-16 15:41:39 (5548): Guest Log: -rwxrwxrwx. 1 root root 194980023 Apr 16  2025 HITS.pool.root.1
2025-04-16 15:41:39 (5548): Guest Log: -rwxrwxrwx. 1 root root      9140 Apr 16 17:18 init_data.xml
2025-04-16 15:41:39 (5548): Guest Log: -rwxrwxrwx. 1 root root    508896 Apr 16 11:16 input.tar.gz
2025-04-16 15:41:39 (5548): Guest Log: -rwxrwxrwx. 1 root root   1341440 Apr 16  2025 result.tar.gz
2025-04-16 15:41:39 (5548): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 16 11:16 start_atlas.sh
2025-04-16 15:41:39 (5548): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-16 15:41:39 (5548): VM Completion File Detected.
2025-04-16 15:41:39 (5548): Powering off VM.
2025-04-16 15:41:40 (5548): Successfully stopped VM.
2025-04-16 15:41:40 (5548): Deregistering VM. (boinc_b70d73b4c1073c07, slot#1)
2025-04-16 15:41:40 (5548): Removing network bandwidth throttle group from VM.
2025-04-16 15:41:40 (5548): Removing VM from VirtualBox.
15:41:45 (5548): called boinc_finish(0)

</stderr_txt>
]]>

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