Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-16 06:05:54 (10444): Detected: vboxwrapper 26206
2025-04-16 06:05:54 (10444): Detected: BOINC client v8.0.4
2025-04-16 06:05:55 (10444): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-04-16 06:05:55 (10444): Successfully copied 'init_data.xml' to the shared directory.
2025-04-16 06:05:56 (10444): Create VM. (boinc_9bb2b40fa8256142, slot#3)
2025-04-16 06:05:56 (10444): Setting Memory Size for VM. (4400MB)
2025-04-16 06:05:56 (10444): Setting CPU Count for VM. (4)
2025-04-16 06:05:57 (10444): Setting Chipset Options for VM.
2025-04-16 06:05:57 (10444): Setting Graphics Controller Options for VM.
2025-04-16 06:05:57 (10444): Setting Boot Options for VM.
2025-04-16 06:05:57 (10444): Setting Network Configuration for NAT.
2025-04-16 06:05:58 (10444): Enabling VM Network Access.
2025-04-16 06:05:58 (10444): Disabling USB Support for VM.
2025-04-16 06:05:58 (10444): Disabling COM Port Support for VM.
2025-04-16 06:05:58 (10444): Disabling LPT Port Support for VM.
2025-04-16 06:05:59 (10444): Disabling Audio Support for VM.
2025-04-16 06:05:59 (10444): Disabling Clipboard Support for VM.
2025-04-16 06:05:59 (10444): Disabling Drag and Drop Support for VM.
2025-04-16 06:05:59 (10444): Adding storage controller(s) to VM.
2025-04-16 06:06:00 (10444): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-16 06:06:00 (10444): Adding VirtualBox Guest Additions to VM.
2025-04-16 06:06:00 (10444): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-16 06:06:01 (10444): forwarding host port 61438 to guest port 80
2025-04-16 06:06:01 (10444): Enabling remote desktop for VM.
2025-04-16 06:06:01 (10444): Required extension pack not installed, remote desktop not enabled.
2025-04-16 06:06:01 (10444): Enabling shared directory for VM.
2025-04-16 06:06:02 (10444): Starting VM using VBoxManage interface. (boinc_9bb2b40fa8256142, slot#3)
2025-04-16 06:06:07 (10444): Successfully started VM. (PID = '7900')
2025-04-16 06:06:07 (10444): Reporting VM Process ID to BOINC.
2025-04-16 06:06:07 (10444): Guest Log: BIOS: VirtualBox 7.0.6
2025-04-16 06:06:07 (10444): Guest Log: CPUID EDX: 0x178bfbff
2025-04-16 06:06:07 (10444): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-16 06:06:07 (10444): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-16 06:06:07 (10444): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-16 06:06:07 (10444): Detected: Web Application Enabled (http://localhost:61438)
2025-04-16 06:06:07 (10444): Preference change detected
2025-04-16 06:06:07 (10444): Setting CPU throttle for VM. (80%)
2025-04-16 06:06:07 (10444): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-16 06:06:09 (10444): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-16 06:06:09 (10444): Guest Log: BIOS: Booting from Hard Disk...
2025-04-16 06:06:12 (10444): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-16 06:06:12 (10444): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-16 06:06:12 (10444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-16 06:06:12 (10444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-16 06:06:12 (10444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-16 06:06:12 (10444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-16 06:06:12 (10444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-16 06:06:12 (10444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-16 06:06:12 (10444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-16 06:06:12 (10444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-16 06:06:12 (10444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-16 06:06:12 (10444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-16 06:06:12 (10444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-16 06:06:12 (10444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-16 06:06:12 (10444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-16 06:06:12 (10444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-16 06:06:12 (10444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-16 06:06:12 (10444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-16 06:06:12 (10444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-16 06:06:12 (10444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-16 06:06:12 (10444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-16 06:06:12 (10444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-16 06:06:12 (10444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-16 06:06:12 (10444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-16 06:06:12 (10444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-16 06:06:12 (10444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-16 06:06:12 (10444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-16 06:06:12 (10444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-16 06:06:12 (10444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-16 06:06:12 (10444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-16 06:06:12 (10444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-16 06:06:12 (10444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-16 06:06:27 (10444): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-16 06:06:27 (10444): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-16 06:06:43 (10444): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-16 06:06:43 (10444): Guest Log: 00:00:00.000213 main     Log opened 2025-04-16T06:06:41.502171000Z
2025-04-16 06:06:43 (10444): Guest Log: 00:00:00.000365 main     OS Product: Linux
2025-04-16 06:06:43 (10444): Guest Log: 00:00:00.000405 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-16 06:06:43 (10444): Guest Log: 00:00:00.000434 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-16 06:06:43 (10444): Guest Log: 00:00:00.000462 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-16 06:06:43 (10444): Guest Log: 00:00:00.000463 main     Process ID: 1295
2025-04-16 06:06:43 (10444): Guest Log: 00:00:00.000464 main     Package type: LINUX_64BITS_GENERIC
2025-04-16 06:06:43 (10444): Guest Log: 00:00:00.001384 main     5.2.32 r132073 started. Verbose level = 0
2025-04-16 06:06:43 (10444): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-16 06:06:43 (10444): Guest Log: [INFO] Mounting shared directory
2025-04-16 06:06:43 (10444): Guest Log: [INFO] Checking for init_data.xml
2025-04-16 06:06:48 (10444): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-16 06:06:48 (10444): Guest Log: [INFO] Detected branch: prod
2025-04-16 06:06:48 (10444): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-16 06:06:48 (10444): Guest Log: Copying input files
2025-04-16 06:06:51 (10444): Guest Log: Copied input files into RunAtlas.
2025-04-16 06:06:51 (10444): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-16 06:06:51 (10444): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-16 06:06:51 (10444): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-16 06:06:51 (10444): Guest Log: Further information can be found at the LHC@home message board.
2025-04-16 06:06:53 (10444): Guest Log: 00:00:10.023672 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 410 808 249 000ns (GuestNow=1 744 798 012 314 891 000 ns GuestLast=1 744 783 601 506 642 000 ns fSetTimeLastLoop=true )
2025-04-16 06:07:00 (10444): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-16 06:07:01 (10444): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-16 06:07:01 (10444): Guest Log: 2.6.3.0 1574 0 30160 144919 3 1 3117322 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-16 06:07:05 (10444): Guest Log: copied the webapp to /var/www
2025-04-16 06:07:05 (10444): Guest Log: ATHENA_PROC_NUMBER=4
2025-04-16 06:07:05 (10444): Guest Log: ATHENA_CORE_NUMBER=4
2025-04-16 06:07:05 (10444): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-16 06:07:06 (10444): Guest Log:  *** Starting ATLAS job. (PandaID=6603702217 taskID=44075483) ***
2025-04-16 07:46:11 (10444): Status Report: Elapsed Time: '6000.000000'
2025-04-16 07:46:11 (10444): Status Report: CPU Time: '9918.890625'
2025-04-16 09:26:14 (10444): Status Report: Elapsed Time: '12000.000000'
2025-04-16 09:26:14 (10444): Status Report: CPU Time: '22940.781250'
2025-04-16 11:06:18 (10444): Status Report: Elapsed Time: '18000.000000'
2025-04-16 11:06:18 (10444): Status Report: CPU Time: '35431.968750'
2025-04-16 11:21:53 (10444): Guest Log:  *** Job finished ***
2025-04-16 11:21:53 (10444): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-16 11:21:53 (10444): Guest Log: 2025-04-16 15:21:40,915 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-04-16 11:21:53 (10444): Guest Log: 2025-04-16 15:21:41,917 | INFO     | [job] queue monitor thread has finished
2025-04-16 11:21:53 (10444): Guest Log: 2025-04-16 15:21:42,716 | INFO     | [data] queue_monitor thread has finished
2025-04-16 11:21:53 (10444): Guest Log: 2025-04-16 15:21:44,135 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140672547071808)>', '<ExcThread(monitor, started 140672099141376)>']
2025-04-16 11:21:53 (10444): Guest Log: 2025-04-16 15:21:45,131 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-16 11:21:53 (10444): Guest Log: 2025-04-16 15:21:45,131 | INFO     | [monitor] control thread has ended
2025-04-16 11:21:53 (10444): Guest Log: 2025-04-16 15:21:49,137 | INFO     | all workflow threads have been joined
2025-04-16 11:21:53 (10444): Guest Log: 2025-04-16 15:21:49,137 | INFO     | end of generic workflow (traces error code: 0)
2025-04-16 11:21:53 (10444): Guest Log: 2025-04-16 15:21:49,137 | INFO     | traces error code: 0
2025-04-16 11:21:53 (10444): Guest Log: 2025-04-16 15:21:49,138 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-16 11:21:53 (10444): Guest Log: 2025-04-16 15:21:49,279 [wrapper] ==== pilot stdout END ====
2025-04-16 11:21:53 (10444): Guest Log: 2025-04-16 15:21:49,316 [wrapper] ==== wrapper stdout RESUME ====
2025-04-16 11:21:53 (10444): Guest Log: 2025-04-16 15:21:49,361 [wrapper] pilotpid: 5912
2025-04-16 11:21:53 (10444): Guest Log: 2025-04-16 15:21:49,439 [wrapper] Pilot exit status: 0
2025-04-16 11:21:53 (10444): Guest Log: 2025-04-16 15:21:49,661 [wrapper] pandaids: 6603702217
2025-04-16 11:21:53 (10444): Guest Log: 2025-04-16 15:21:49,901 [wrapper] cleanup supervisor_pilot 17658 5913
2025-04-16 11:21:53 (10444): Guest Log: 2025-04-16 15:21:49,986 [wrapper] Test setup, not cleaning
2025-04-16 11:21:53 (10444): Guest Log: 2025-04-16 15:21:50,007 [wrapper] apfmon messages muted
2025-04-16 11:21:53 (10444): Guest Log: 2025-04-16 15:21:50,054 [wrapper] ==== wrapper stdout END ====
2025-04-16 11:21:53 (10444): Guest Log: 2025-04-16 15:21:50,117 [wrapper] ==== wrapper stderr END ====
2025-04-16 11:21:54 (10444): Guest Log:  *** Error codes and diagnostics ***
2025-04-16 11:21:54 (10444): Guest Log:     "exeErrorCode": 0,
2025-04-16 11:21:54 (10444): Guest Log:     "exeErrorDiag": "",
2025-04-16 11:21:54 (10444): Guest Log:     "pilotErrorCode": 0,
2025-04-16 11:21:54 (10444): Guest Log:     "pilotErrorDiag": "",
2025-04-16 11:21:54 (10444): Guest Log:  *** Listing of results directory ***
2025-04-16 11:21:54 (10444): Guest Log: total 204456
2025-04-16 11:21:54 (10444): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Apr 16 06:59 pilot3.tar.gz
2025-04-16 11:21:54 (10444): Guest Log: -rwx------. 1 atlas atlas     37140 Apr 16 07:16 runpilot2-wrapper.sh
2025-04-16 11:21:54 (10444): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Apr 16 07:16 queuedata.json
2025-04-16 11:21:54 (10444): Guest Log: -rwxr-xr-x. 1 atlas atlas     11034 Apr 16 10:06 init_data.xml
2025-04-16 11:21:54 (10444): Guest Log: -rwxr-xr-x. 1 atlas atlas    508889 Apr 16 10:06 input.tar.gz
2025-04-16 11:21:54 (10444): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Apr 16 10:06 start_atlas.sh
2025-04-16 11:21:54 (10444): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr 16 10:06 EVNT.44075481._001466.pool.root.1 -> /data/./ATLAS.root_0
2025-04-16 11:21:54 (10444): Guest Log: -rw-r--r--. 1 atlas atlas      2579 Apr 16 10:07 pandaJob.out
2025-04-16 11:21:54 (10444): Guest Log: -rw-------. 1 atlas atlas       424 Apr 16 10:07 setup.sh.local
2025-04-16 11:21:54 (10444): Guest Log: -rw-------. 1 atlas atlas    985396 Apr 16 10:08 agis_schedconf.cvmfs.json
2025-04-16 11:21:54 (10444): Guest Log: drwx------. 4 atlas atlas      4096 Apr 16 10:09 pilot3
2025-04-16 11:21:54 (10444): Guest Log: -rw-------. 1 atlas atlas 202230522 Apr 16 15:19 HITS.44075483._037320.pool.root.1
2025-04-16 11:21:54 (10444): Guest Log: -rw-------. 1 atlas atlas      1040 Apr 16 15:20 memory_monitor_summary.json
2025-04-16 11:21:54 (10444): Guest Log: -rw-------. 1 atlas atlas   1603529 Apr 16 15:20 agis_ddmendpoints.agis.ALL.json
2025-04-16 11:21:54 (10444): Guest Log: -rw-------. 1 atlas atlas    357243 Apr 16 15:20 log.44075483._037320.job.log.tgz.1
2025-04-16 11:21:54 (10444): Guest Log: -rw-------. 1 atlas atlas        95 Apr 16 15:21 pilot_heartbeat.json
2025-04-16 11:21:54 (10444): Guest Log: -rw-------. 1 atlas atlas      7718 Apr 16 15:21 heartbeat.json
2025-04-16 11:21:54 (10444): Guest Log: -rw-------. 1 atlas atlas      4722 Apr 16 15:21 pilotlog.txt
2025-04-16 11:21:54 (10444): Guest Log: -rw-------. 1 atlas atlas   1321216 Apr 16 15:21 log.44075483._037320.job.log.1
2025-04-16 11:21:54 (10444): Guest Log: -rw-------. 1 atlas atlas       357 Apr 16 15:21 output.list
2025-04-16 11:21:54 (10444): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr 16 15:21 runtime_log
2025-04-16 11:21:54 (10444): Guest Log: -rw-------. 1 atlas atlas   1699840 Apr 16 15:21 result.tar.gz
2025-04-16 11:21:54 (10444): Guest Log: -rw-r--r--. 1 atlas atlas     10906 Apr 16 15:21 runtime_log.err
2025-04-16 11:21:54 (10444): Guest Log: -rw-------. 1 atlas atlas       647 Apr 16 15:21 35uKDm3BCP7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmenZLDm25rZxn.diag
2025-04-16 11:21:54 (10444): Guest Log: Looking for outputfile HITS.44075483._037320.pool.root.1
2025-04-16 11:21:54 (10444): Guest Log: HITS file was successfully produced
2025-04-16 11:21:54 (10444): Guest Log: -rw-------. 1 atlas atlas 202230522 Apr 16 15:19 /home/atlas/RunAtlas/HITS.44075483._037320.pool.root.1
2025-04-16 11:21:55 (10444): Guest Log: Successfully finished the ATLAS job!
2025-04-16 11:21:55 (10444): Guest Log: Copying the results back to the shared directory!
2025-04-16 11:21:56 (10444): Guest Log:  *** Contents of shared directory: ***
2025-04-16 11:21:56 (10444): Guest Log: total 420988
2025-04-16 11:21:56 (10444): Guest Log: -rwxrwxrwx. 1 root root 226614238 Apr 16 10:05 ATLAS.root_0
2025-04-16 11:21:56 (10444): Guest Log: -rwxrwxrwx. 1 root root 202230522 Apr 16 15:21 HITS.pool.root.1
2025-04-16 11:21:56 (10444): Guest Log: -rwxrwxrwx. 1 root root     11034 Apr 16 10:05 init_data.xml
2025-04-16 11:21:56 (10444): Guest Log: -rwxrwxrwx. 1 root root    508889 Apr 16 10:05 input.tar.gz
2025-04-16 11:21:56 (10444): Guest Log: -rwxrwxrwx. 1 root root   1699840 Apr 16 15:21 result.tar.gz
2025-04-16 11:21:56 (10444): Guest Log: -rwxrwxrwx. 1 root root     17569 Apr 16 10:05 start_atlas.sh
2025-04-16 11:21:56 (10444): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-16 11:21:56 (10444): VM Completion File Detected.
2025-04-16 11:21:56 (10444): Powering off VM.
2025-04-16 11:21:57 (10444): Successfully stopped VM.
2025-04-16 11:21:57 (10444): Deregistering VM. (boinc_9bb2b40fa8256142, slot#3)
2025-04-16 11:21:57 (10444): Removing network bandwidth throttle group from VM.
2025-04-16 11:21:57 (10444): Removing VM from VirtualBox.
11:22:02 (10444): called boinc_finish(0)

</stderr_txt>
]]>

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