Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
11:42:53 (987585): wrapper (7.7.26015): starting
11:42:53 (987585): wrapper: running run_atlas (--nthreads 12)
[2025-04-16 11:42:53] Arguments: --nthreads 12
[2025-04-16 11:42:53] Threads: 12
[2025-04-16 11:42:53] Checking for CVMFS
[2025-04-16 11:42:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-16 11:42:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-16 11:42:53] Running cvmfs_config stat atlas.cern.ch
[2025-04-16 11:42:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-16 11:42:53] 2.12.6.0 4038419 7625 120880 144923 3 186 3444781 4096000 12229 130560 0 64903895 99.982 2085152 357 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.230:3128 1
[2025-04-16 11:42:53] CVMFS is ok
[2025-04-16 11:42:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-16 11:42:53] Checking for apptainer binary...
[2025-04-16 11:42:53] apptainer is not installed, using version from CVMFS
[2025-04-16 11:42:53] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-16 11:42:54] epyc7v12
[2025-04-16 11:42:54] apptainer works
[2025-04-16 11:42:54] Set ATHENA_PROC_NUMBER=12
[2025-04-16 11:42:54] Set ATHENA_CORE_NUMBER=12
[2025-04-16 11:42:54] Starting ATLAS job with PandaID=6603697677
[2025-04-16 11:42:54] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-16 13:52:12]  *** The last 200 lines of the pilot log: ***
[2025-04-16 13:52:12] 2025-04-16 13:51:56,549 | INFO     | sum of deviations: 71196488641.49998
[2025-04-16 13:52:12] 2025-04-16 13:51:56,549 | INFO     | mean x: 1744807628.5
[2025-04-16 13:52:12] 2025-04-16 13:51:56,549 | INFO     | mean y: 2495820.8492063493
[2025-04-16 13:52:12] 2025-04-16 13:51:56,549 | INFO     | -- intersect: -200280197685.4124
[2025-04-16 13:52:12] 2025-04-16 13:51:56,549 | INFO     | intersect: -200280197685.4124
[2025-04-16 13:52:12] 2025-04-16 13:51:56,549 | INFO     | chi2: 5.058014196433021
[2025-04-16 13:52:12] 2025-04-16 13:51:56,550 | INFO     | sum of square deviations: 549294020.0
[2025-04-16 13:52:12] 2025-04-16 13:51:56,550 | INFO     | sum of deviations: 67935256347.0
[2025-04-16 13:52:12] 2025-04-16 13:51:56,550 | INFO     | mean x: 1744807476.0
[2025-04-16 13:52:12] 2025-04-16 13:51:56,551 | INFO     | mean y: 2488807.743801653
[2025-04-16 13:52:12] 2025-04-16 13:51:56,551 | INFO     | -- intersect: -215790763698.85013
[2025-04-16 13:52:12] 2025-04-16 13:51:56,551 | INFO     | intersect: -215790763698.85013
[2025-04-16 13:52:12] 2025-04-16 13:51:56,551 | INFO     | chi2: 5.048396748110661
[2025-04-16 13:52:12] 2025-04-16 13:51:56,551 | INFO     | current chi2=5.048396748110661 (change=0.19014277044027406 %)
[2025-04-16 13:52:12] 2025-04-16 13:51:56,551 | INFO     | right removable region: 120
[2025-04-16 13:52:12] 2025-04-16 13:51:56,552 | INFO     | sum of square deviations: 549294020.0
[2025-04-16 13:52:12] 2025-04-16 13:51:56,552 | INFO     | sum of deviations: 36492013774.0
[2025-04-16 13:52:12] 2025-04-16 13:51:56,552 | INFO     | mean x: 1744807781.0
[2025-04-16 13:52:12] 2025-04-16 13:51:56,552 | INFO     | mean y: 2570173.3305785125
[2025-04-16 13:52:12] 2025-04-16 13:51:56,553 | INFO     | -- intersect: -115912672408.83766
[2025-04-16 13:52:12] 2025-04-16 13:51:56,553 | INFO     | intersect: -115912672408.83766
[2025-04-16 13:52:12] 2025-04-16 13:51:56,553 | INFO     | chi2: 2.082544489234094
[2025-04-16 13:52:12] 2025-04-16 13:51:56,553 | INFO     | current chi2=2.082544489234094 (change=58.82683582219417 %)
[2025-04-16 13:52:12] 2025-04-16 13:51:56,553 | INFO     | sum of square deviations: 483971865.0
[2025-04-16 13:52:12] 2025-04-16 13:51:56,554 | INFO     | sum of deviations: 7601103250.0
[2025-04-16 13:52:12] 2025-04-16 13:51:56,554 | INFO     | mean x: 1744807933.5
[2025-04-16 13:52:12] 2025-04-16 13:51:56,554 | INFO     | mean y: 2637653.379310345
[2025-04-16 13:52:12] 2025-04-16 13:51:56,554 | INFO     | -- intersect: -27400743024.447147
[2025-04-16 13:52:12] 2025-04-16 13:51:56,554 | INFO     | intersect: -27400743024.447147
[2025-04-16 13:52:12] 2025-04-16 13:51:56,554 | INFO     | chi2: 0.16783666859712604
[2025-04-16 13:52:12] 2025-04-16 13:51:56,555 | INFO     | current chi2=0.16783666859712604 (change=91.94078832578256 %)
[2025-04-16 13:52:12] 2025-04-16 13:51:56,555 | INFO     | sum of square deviations: 424045160.0
[2025-04-16 13:52:12] 2025-04-16 13:51:56,555 | INFO     | sum of deviations: 1175004204.0000002
[2025-04-16 13:52:12] 2025-04-16 13:51:56,556 | INFO     | mean x: 1744808086.0
[2025-04-16 13:52:12] 2025-04-16 13:51:56,556 | INFO     | mean y: 2653662.3063063063
[2025-04-16 13:52:12] 2025-04-16 13:51:56,556 | INFO     | -- intersect: -4832106947.208006
[2025-04-16 13:52:12] 2025-04-16 13:51:56,556 | INFO     | intersect: -4832106947.208006
[2025-04-16 13:52:12] 2025-04-16 13:51:56,556 | INFO     | chi2: 0.0003526835204194429
[2025-04-16 13:52:12] 2025-04-16 13:51:56,556 | INFO     | current chi2=0.0003526835204194429 (change=99.7898650376182 %)
[2025-04-16 13:52:12] 2025-04-16 13:51:56,556 | INFO     | sum of square deviations: 369281342.5
[2025-04-16 13:52:12] 2025-04-16 13:51:56,557 | INFO     | sum of deviations: 941664930.0
[2025-04-16 13:52:12] 2025-04-16 13:51:56,557 | INFO     | mean x: 1744808238.5
[2025-04-16 13:52:12] 2025-04-16 13:51:56,557 | INFO     | mean y: 2654307.283018868
[2025-04-16 13:52:12] 2025-04-16 13:51:56,557 | INFO     | -- intersect: -4446594920.006404
[2025-04-16 13:52:12] 2025-04-16 13:51:56,557 | INFO     | intersect: -4446594920.006404
[2025-04-16 13:52:12] 2025-04-16 13:51:56,558 | INFO     | chi2: 0.00032067702306225263
[2025-04-16 13:52:12] 2025-04-16 13:51:56,558 | INFO     | current chi2=0.00032067702306225263 (change=9.075132662599394 %)
[2025-04-16 13:52:12] 2025-04-16 13:51:56,558 | INFO     | left removable region: 40
[2025-04-16 13:52:12] 2025-04-16 13:51:56,558 | INFO     | sum of square deviations: 158737860.0
[2025-04-16 13:52:12] 2025-04-16 13:51:56,558 | INFO     | sum of deviations: 654895756.0
[2025-04-16 13:52:12] 2025-04-16 13:51:56,559 | INFO     | mean x: 1744808665.5
[2025-04-16 13:52:12] 2025-04-16 13:51:56,559 | INFO     | mean y: 2654012.825
[2025-04-16 13:52:12] 2025-04-16 13:51:56,559 | INFO     | -- intersect: -7195803809.826594
[2025-04-16 13:52:12] 2025-04-16 13:51:56,559 | INFO     | intersect: -7195803809.826594
[2025-04-16 13:52:12] 2025-04-16 13:51:56,559 | INFO     | chi2: 2.8575797922070875e-05
[2025-04-16 13:52:12] 2025-04-16 13:51:56,559 | INFO     | -- intersect: -7195803809.826594
[2025-04-16 13:52:12] 2025-04-16 13:51:56,559 | INFO     | current memory leak: 4.13 B/s (using 80 data points, chi2=0.00)
[2025-04-16 13:52:12] 2025-04-16 13:51:56,560 | INFO     | ..............................
[2025-04-16 13:52:12] 2025-04-16 13:51:56,560 | INFO     | . Timing measurements:
[2025-04-16 13:52:12] 2025-04-16 13:51:56,560 | INFO     | . get job = 0 s
[2025-04-16 13:52:12] 2025-04-16 13:51:56,560 | INFO     | . initial setup = 1 s
[2025-04-16 13:52:12] 2025-04-16 13:51:56,560 | INFO     | . payload setup = 7 s
[2025-04-16 13:52:12] 2025-04-16 13:51:56,560 | INFO     | . stage-in = 0 s
[2025-04-16 13:52:12] 2025-04-16 13:51:56,560 | INFO     | . payload execution = 7688 s
[2025-04-16 13:52:12] 2025-04-16 13:51:56,560 | INFO     | . stage-out = 1 s
[2025-04-16 13:52:12] 2025-04-16 13:51:56,560 | INFO     | . log creation = 0 s
[2025-04-16 13:52:12] 2025-04-16 13:51:56,561 | INFO     | ..............................
[2025-04-16 13:52:12] 2025-04-16 13:51:56,671 | INFO     | 
[2025-04-16 13:52:12] 2025-04-16 13:51:56,671 | INFO     | job summary report
[2025-04-16 13:52:12] 2025-04-16 13:51:56,671 | INFO     | --------------------------------------------------
[2025-04-16 13:52:12] 2025-04-16 13:51:56,671 | INFO     | PanDA job id: 6603697677
[2025-04-16 13:52:12] 2025-04-16 13:51:56,671 | INFO     | task id: 44075483
[2025-04-16 13:52:12] 2025-04-16 13:51:56,671 | INFO     | errors: (none)
[2025-04-16 13:52:12] 2025-04-16 13:51:56,672 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-16 13:52:12] 2025-04-16 13:51:56,672 | INFO     | pilot state: finished 
[2025-04-16 13:52:12] 2025-04-16 13:51:56,672 | INFO     | transexitcode: 0
[2025-04-16 13:52:12] 2025-04-16 13:51:56,672 | INFO     | exeerrorcode: 0
[2025-04-16 13:52:12] 2025-04-16 13:51:56,672 | INFO     | exeerrordiag: 
[2025-04-16 13:52:12] 2025-04-16 13:51:56,672 | INFO     | exitcode: 0
[2025-04-16 13:52:12] 2025-04-16 13:51:56,672 | INFO     | exitmsg: OK
[2025-04-16 13:52:12] 2025-04-16 13:51:56,672 | INFO     | cpuconsumptiontime: 46162 s
[2025-04-16 13:52:12] 2025-04-16 13:51:56,672 | INFO     | nevents: 400
[2025-04-16 13:52:12] 2025-04-16 13:51:56,672 | INFO     | neventsw: 0
[2025-04-16 13:52:12] 2025-04-16 13:51:56,672 | INFO     | pid: 1022648
[2025-04-16 13:52:12] 2025-04-16 13:51:56,672 | INFO     | pgrp: 1022648
[2025-04-16 13:52:12] 2025-04-16 13:51:56,673 | INFO     | corecount: 12
[2025-04-16 13:52:12] 2025-04-16 13:51:56,673 | INFO     | event service: False
[2025-04-16 13:52:12] 2025-04-16 13:51:56,673 | INFO     | sizes: {0: 2417167, 1: 2417366, 6: 2417572, 11: 2417600, 7699: 2445205, 7700: 2454192, 7703: 2454376, 7713: 2454546}
[2025-04-16 13:52:12] 2025-04-16 13:51:56,673 | INFO     | --------------------------------------------------
[2025-04-16 13:52:12] 2025-04-16 13:51:56,673 | INFO     | 
[2025-04-16 13:52:12] 2025-04-16 13:51:56,673 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/9
[2025-04-16 13:52:12] 2025-04-16 13:51:56,699 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-16 13:52:12] 2025-04-16 13:51:56,699 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-16 13:52:12] 2025-04-16 13:51:56,699 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-16 13:52:12] 2025-04-16 13:51:56,700 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-16 13:52:12] 2025-04-16 13:51:56,700 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-16 13:52:12] 2025-04-16 13:51:56,700 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-16 13:52:12] 2025-04-16 13:51:56,700 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-16 13:52:12] 2025-04-16 13:51:56,700 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-16 13:52:12] 2025-04-16 13:51:56,700 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-16 13:52:12] 2025-04-16 13:51:56,700 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-16 13:52:12] 2025-04-16 13:51:56,701 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-16 13:52:12] 2025-04-16 13:51:56,701 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-16 13:52:12] 2025-04-16 13:51:56,701 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-16 13:52:12] 2025-04-16 13:51:56,701 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-16 13:52:12] 2025-04-16 13:51:56,701 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-16 13:52:12] 2025-04-16 13:51:56,701 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-16 13:52:12] 2025-04-16 13:51:56,701 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-16 13:52:12] 2025-04-16 13:51:56,702 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-16 13:52:12] 2025-04-16 13:51:56,702 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-16 13:52:12] 2025-04-16 13:51:56,702 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-16 13:52:12] 2025-04-16 13:51:56,702 | INFO     | job 6603697677 has completed (purged errors)
[2025-04-16 13:52:12] 2025-04-16 13:51:56,702 | INFO     | overall cleanup function is called
[2025-04-16 13:52:12] 2025-04-16 13:51:57,711 | INFO     | --- collectZombieJob: --- 10, [1022648]
[2025-04-16 13:52:12] 2025-04-16 13:51:57,711 | INFO     | zombie collector waiting for pid 1022648
[2025-04-16 13:52:12] 2025-04-16 13:51:57,711 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-16 13:52:12] 2025-04-16 13:51:57,711 | INFO     | collected zombie processes
[2025-04-16 13:52:12] 2025-04-16 13:51:57,711 | INFO     | will attempt to kill all subprocesses of pid=1022648
[2025-04-16 13:52:12] 2025-04-16 13:51:58,308 | INFO     | process IDs to be killed: [1022648] (in reverse order)
[2025-04-16 13:52:12] 2025-04-16 13:51:58,530 | WARNING  | found no corresponding commands to process id(s)
[2025-04-16 13:52:12] 2025-04-16 13:51:58,531 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-16 13:52:12] 2025-04-16 13:51:58,552 | INFO     | did not find any defunct processes belonging to 1022648
[2025-04-16 13:52:12] 2025-04-16 13:51:58,573 | INFO     | did not find any defunct processes belonging to 1022648
[2025-04-16 13:52:12] 2025-04-16 13:51:58,573 | INFO     | ready for new job
[2025-04-16 13:52:12] 2025-04-16 13:51:58,574 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-16 13:52:12] 2025-04-16 13:51:58,575 | INFO     | **************************************
[2025-04-16 13:52:12] 2025-04-16 13:51:58,576 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-16 13:52:12] 2025-04-16 13:51:58,576 | INFO     | **************************************
[2025-04-16 13:52:12] 2025-04-16 13:51:58,576 | INFO     | 
[2025-04-16 13:52:12] 2025-04-16 13:51:58,586 | INFO     | architecture information:
[2025-04-16 13:52:12] 2025-04-16 13:51:58,587 | INFO     | executing command: cat /etc/os-release
[2025-04-16 13:52:12] 2025-04-16 13:51:58,606 | INFO     | cat /etc/os-release:
[2025-04-16 13:52:12] NAME="CentOS Linux"
[2025-04-16 13:52:12] VERSION="7 (Core)"
[2025-04-16 13:52:12] ID="centos"
[2025-04-16 13:52:12] ID_LIKE="rhel fedora"
[2025-04-16 13:52:12] VERSION_ID="7"
[2025-04-16 13:52:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-16 13:52:12] ANSI_COLOR="0;31"
[2025-04-16 13:52:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-16 13:52:12] HOME_URL="https://www.centos.org/"
[2025-04-16 13:52:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-16 13:52:12] 
[2025-04-16 13:52:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-16 13:52:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-16 13:52:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-16 13:52:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-16 13:52:12] 
[2025-04-16 13:52:12] 2025-04-16 13:51:58,607 | INFO     | **************************************
[2025-04-16 13:52:12] 2025-04-16 13:51:59,111 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/9
[2025-04-16 13:52:12] 2025-04-16 13:51:59,135 | INFO     | sufficient remaining disk space (318423171072 B)
[2025-04-16 13:52:12] 2025-04-16 13:51:59,136 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-16 13:52:12] 2025-04-16 13:51:59,136 | INFO     | current server update state: UPDATING_FINAL
[2025-04-16 13:52:12] 2025-04-16 13:51:59,136 | INFO     | update_server=False
[2025-04-16 13:52:12] 2025-04-16 13:51:59,136 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-16 13:52:12] 2025-04-16 13:51:59,136 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-16 13:52:12] 2025-04-16 13:51:59,137 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-16 13:52:12] 2025-04-16 13:51:59,138 | INFO     | found 0 job(s) in 20 queues
[2025-04-16 13:52:12] 2025-04-16 13:51:59,138 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-16 13:52:12] 2025-04-16 13:51:59,138 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-16 13:52:12] 2025-04-16 13:51:59,419 | INFO     | all data control threads have been joined
[2025-04-16 13:52:12] 2025-04-16 13:52:00,039 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-16 13:52:12] 2025-04-16 13:52:00,039 | INFO     | aborting loop
[2025-04-16 13:52:12] 2025-04-16 13:52:00,139 | INFO     | [job] retrieve thread has finished
[2025-04-16 13:52:12] 2025-04-16 13:52:00,151 | INFO     | all payload control threads have been joined
[2025-04-16 13:52:12] 2025-04-16 13:52:00,423 | INFO     | [data] control thread has finished
[2025-04-16 13:52:12] 2025-04-16 13:52:00,427 | INFO     | [payload] failed_post thread has finished
[2025-04-16 13:52:12] 2025-04-16 13:52:00,435 | INFO     | [data] copytool_in thread has finished
[2025-04-16 13:52:12] 2025-04-16 13:52:00,448 | INFO     | all job control threads have been joined
[2025-04-16 13:52:12] 2025-04-16 13:52:00,639 | INFO     | [payload] validate_pre thread has finished
[2025-04-16 13:52:12] 2025-04-16 13:52:00,819 | INFO     | [job] validate thread has finished
[2025-04-16 13:52:12] 2025-04-16 13:52:00,899 | INFO     | [payload] validate_post thread has finished
[2025-04-16 13:52:12] 2025-04-16 13:52:01,047 | INFO     | [job] job monitor thread has finished
[2025-04-16 13:52:12] 2025-04-16 13:52:01,135 | INFO     | [payload] execute_payloads thread has finished
[2025-04-16 13:52:12] 2025-04-16 13:52:01,139 | INFO     | [data] copytool_out thread has finished
[2025-04-16 13:52:12] 2025-04-16 13:52:01,147 | INFO     | [job] create_data_payload thread has finished
[2025-04-16 13:52:12] 2025-04-16 13:52:01,159 | INFO     | [payload] control thread has finished
[2025-04-16 13:52:12] 2025-04-16 13:52:01,351 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-16 13:52:12] 2025-04-16 13:52:01,452 | INFO     | [job] control thread has finished
[2025-04-16 13:52:12] 2025-04-16 13:52:01,623 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-16 13:52:12] 2025-04-16 13:52:01,679 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-16 13:52:12] 2025-04-16 13:52:02,683 | INFO     | [job] queue monitor thread has finished
[2025-04-16 13:52:12] 2025-04-16 13:52:05,635 | INFO     | [data] queue_monitor thread has finished
[2025-04-16 13:52:12] 2025-04-16 13:52:07,169 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140262758721344)>', '<ExcThread(monitor, started 140262315632384)>']
[2025-04-16 13:52:12] 2025-04-16 13:52:07,175 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-16 13:52:12] 2025-04-16 13:52:07,175 | INFO     | [monitor] control thread has ended
[2025-04-16 13:52:12] 2025-04-16 13:52:12,191 | INFO     | all workflow threads have been joined
[2025-04-16 13:52:12] 2025-04-16 13:52:12,191 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-16 13:52:12] 2025-04-16 13:52:12,191 | INFO     | traces error code: 0
[2025-04-16 13:52:12] 2025-04-16 13:52:12,192 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-16 13:52:12] 2025-04-16 13:52:12,327 [wrapper] ==== pilot stdout END ====
[2025-04-16 13:52:12] 2025-04-16 13:52:12,332 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-16 13:52:12] 2025-04-16 13:52:12,335 [wrapper] pilotpid: 999094
[2025-04-16 13:52:12] 2025-04-16 13:52:12,339 [wrapper] Pilot exit status: 0
[2025-04-16 13:52:12] 2025-04-16 13:52:12,351 [wrapper] pandaids: 6603697677
[2025-04-16 13:52:12] 2025-04-16 13:52:12,473 [wrapper] cleanup supervisor_pilot 1475584 999095
[2025-04-16 13:52:12] 2025-04-16 13:52:12,477 [wrapper] Test setup, not cleaning
[2025-04-16 13:52:12] 2025-04-16 13:52:12,480 [wrapper] apfmon messages muted
[2025-04-16 13:52:12] 2025-04-16 13:52:12,484 [wrapper] ==== wrapper stdout END ====
[2025-04-16 13:52:12] 2025-04-16 13:52:12,487 [wrapper] ==== wrapper stderr END ====
[2025-04-16 13:52:12]  *** Error codes and diagnostics ***
[2025-04-16 13:52:12]     "exeErrorCode": 0,
[2025-04-16 13:52:12]     "exeErrorDiag": "",
[2025-04-16 13:52:12]     "pilotErrorCode": 0,
[2025-04-16 13:52:12]     "pilotErrorDiag": "",
[2025-04-16 13:52:12]  *** Listing of results directory ***
[2025-04-16 13:52:12] total 412972
[2025-04-16 13:52:12] -rw-r--r-- 1 boinc boinc      5111 Apr 15 23:59 queuedata.json
[2025-04-16 13:52:12] -rwx------ 1 boinc boinc     37140 Apr 16 00:02 runpilot2-wrapper.sh
[2025-04-16 13:52:12] -rw-r--r-- 1 boinc boinc    495897 Apr 16 00:02 pilot3.tar.gz
[2025-04-16 13:52:12] -rw-rw-r-- 1 boinc boinc       100 Apr 16 11:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-16 13:52:12] -rwxr-xr-x 1 boinc boinc      7986 Apr 16 11:42 run_atlas
[2025-04-16 13:52:12] -rw-rw-r-- 1 boinc boinc       105 Apr 16 11:42 job.xml
[2025-04-16 13:52:12] -rw-r--r-- 2 boinc boinc     17569 Apr 16 11:42 start_atlas.sh
[2025-04-16 13:52:12] drwxrwx--x 2 boinc boinc      4096 Apr 16 11:42 shared
[2025-04-16 13:52:12] -rw-r--r-- 2 boinc boinc    508889 Apr 16 11:42 input.tar.gz
[2025-04-16 13:52:12] -rw-rw-r-- 1 boinc boinc      6941 Apr 16 11:42 init_data.xml
[2025-04-16 13:52:12] -rw-r--r-- 2 boinc boinc 222746632 Apr 16 11:42 EVNT.44075481._001321.pool.root.1
[2025-04-16 13:52:12] -rw-rw-r-- 1 boinc boinc         0 Apr 16 11:42 boinc_lockfile
[2025-04-16 13:52:12] -rw-rw-r-- 1 boinc boinc      2578 Apr 16 11:42 pandaJob.out
[2025-04-16 13:52:12] -rw------- 1 boinc boinc       424 Apr 16 11:42 setup.sh.local
[2025-04-16 13:52:12] -rw------- 1 boinc boinc    987251 Apr 16 11:43 agis_schedconf.cvmfs.json
[2025-04-16 13:52:12] -rw------- 1 boinc boinc   1603529 Apr 16 11:43 agis_ddmendpoints.agis.ALL.json
[2025-04-16 13:52:12] drwx------ 4 boinc boinc      4096 Apr 16 11:43 pilot3
[2025-04-16 13:52:12] -rw------- 1 boinc boinc 194090105 Apr 16 13:51 HITS.44075483._033685.pool.root.1
[2025-04-16 13:52:12] -rw-rw-r-- 1 boinc boinc       530 Apr 16 13:51 boinc_task_state.xml
[2025-04-16 13:52:12] -rw------- 1 boinc boinc        95 Apr 16 13:51 pilot_heartbeat.json
[2025-04-16 13:52:12] -rw------- 1 boinc boinc      1024 Apr 16 13:51 memory_monitor_summary.json
[2025-04-16 13:52:12] -rw------- 1 boinc boinc    396687 Apr 16 13:51 log.44075483._033685.job.log.tgz.1
[2025-04-16 13:52:12] -rw-rw-r-- 1 boinc boinc        27 Apr 16 13:51 wrapper_checkpoint.txt
[2025-04-16 13:52:12] -rw-rw-r-- 1 boinc boinc      8192 Apr 16 13:51 boinc_mmap_file
[2025-04-16 13:52:12] -rw------- 1 boinc boinc      7650 Apr 16 13:51 heartbeat.json
[2025-04-16 13:52:12] -rw------- 1 boinc boinc      4500 Apr 16 13:52 pilotlog.txt
[2025-04-16 13:52:12] -rw------- 1 boinc boinc    701450 Apr 16 13:52 log.44075483._033685.job.log.1
[2025-04-16 13:52:12] -rw------- 1 boinc boinc       357 Apr 16 13:52 output.list
[2025-04-16 13:52:12] -rw-rw-r-- 1 boinc boinc       620 Apr 16 13:52 runtime_log
[2025-04-16 13:52:12] -rw------- 1 boinc boinc   1116160 Apr 16 13:52 result.tar.gz
[2025-04-16 13:52:12] -rw------- 1 boinc boinc       651 Apr 16 13:52 y7EODm5P5O7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmiAZLDm7Apo3n.diag
[2025-04-16 13:52:12] -rw-rw-r-- 1 boinc boinc     11409 Apr 16 13:52 runtime_log.err
[2025-04-16 13:52:12] -rw-rw-r-- 1 boinc boinc     20520 Apr 16 13:52 stderr.txt
[2025-04-16 13:52:12] HITS file was successfully produced:
[2025-04-16 13:52:12] -rw------- 1 boinc boinc 194090105 Apr 16 13:51 shared/HITS.pool.root.1
[2025-04-16 13:52:12]  *** Contents of shared directory: ***
[2025-04-16 13:52:12] total 408692
[2025-04-16 13:52:12] -rw-r--r-- 2 boinc boinc     17569 Apr 16 11:42 start_atlas.sh
[2025-04-16 13:52:12] -rw-r--r-- 2 boinc boinc    508889 Apr 16 11:42 input.tar.gz
[2025-04-16 13:52:12] -rw-r--r-- 2 boinc boinc 222746632 Apr 16 11:42 ATLAS.root_0
[2025-04-16 13:52:12] -rw------- 1 boinc boinc 194090105 Apr 16 13:51 HITS.pool.root.1
[2025-04-16 13:52:12] -rw------- 1 boinc boinc   1116160 Apr 16 13:52 result.tar.gz
13:52:14 (987585): run_atlas exited; CPU time 46539.605413
13:52:14 (987585): called boinc_finish(0)

</stderr_txt>
]]>

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