Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:33:49 (1514): wrapper (7.7.26015): starting
05:33:49 (1514): wrapper: running run_atlas (--nthreads 10)
[2025-04-16 05:33:49] Arguments: --nthreads 10
[2025-04-16 05:33:49] Threads: 10
[2025-04-16 05:33:49] Checking for CVMFS
[2025-04-16 05:33:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-16 05:33:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-16 05:33:50] Running cvmfs_config stat atlas.cern.ch
[2025-04-16 05:33:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-16 05:33:50] 2.11.2.0 1570 38108 236560 144919 3 508 16883153 18432001 20441 130560 0 155047749 98.892 394580807 35895 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-16 05:33:50] CVMFS is ok
[2025-04-16 05:33:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-16 05:33:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-16 05:33:50] Further information can be found at the LHC@home message board.
[2025-04-16 05:33:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-16 05:33:50] Checking for apptainer binary...
[2025-04-16 05:33:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-16 05:33:50] Running /usr/bin/apptainer --version
[2025-04-16 05:33:50] apptainer version 1.3.2-1.el7
[2025-04-16 05:33:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-16 05:33:51] c-210-9.aglt2.org
[2025-04-16 05:33:51] apptainer works
[2025-04-16 05:33:52] Set ATHENA_PROC_NUMBER=10
[2025-04-16 05:33:52] Set ATHENA_CORE_NUMBER=10
[2025-04-16 05:33:52] Starting ATLAS job with PandaID=6603701722
[2025-04-16 05:33:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:13:45 (10041): wrapper (7.7.26015): starting
15:13:45 (10041): wrapper: running run_atlas (--nthreads 10)
[2025-04-16 15:13:45] Arguments: --nthreads 10
[2025-04-16 15:13:45] Threads: 10
[2025-04-16 15:13:45] This job has been restarted, cleaning up previous attempt
[2025-04-16 15:13:45] Checking for CVMFS
[2025-04-16 15:13:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-16 15:13:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-16 15:13:46] Running cvmfs_config stat atlas.cern.ch
[2025-04-16 15:13:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-16 15:13:48] 2.11.2.0 1570 38688 232260 144935 0 220 10575290 18432000 18226 130560 0 157401870 98.899 397902053 35900 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-16 15:13:48] CVMFS is ok
[2025-04-16 15:13:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-16 15:13:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-16 15:13:48] Further information can be found at the LHC@home message board.
[2025-04-16 15:13:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-16 15:13:48] Checking for apptainer binary...
[2025-04-16 15:13:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-16 15:13:48] Running /usr/bin/apptainer --version
[2025-04-16 15:13:48] apptainer version 1.3.2-1.el7
[2025-04-16 15:13:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-16 15:14:06] c-210-9.aglt2.org
[2025-04-16 15:14:06] apptainer works
[2025-04-16 15:14:06] Set ATHENA_PROC_NUMBER=10
[2025-04-16 15:14:06] Set ATHENA_CORE_NUMBER=10
[2025-04-16 15:14:06] Starting ATLAS job with PandaID=6603701722
[2025-04-16 15:14:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-17 12:14:54]  *** The last 200 lines of the pilot log: ***
[2025-04-17 12:14:54] 2025-04-17 16:14:31,498 | INFO     | mean x: 1744868927.3222132
[2025-04-17 12:14:54] 2025-04-17 16:14:31,499 | INFO     | mean y: 2544507.1415785193
[2025-04-17 12:14:54] 2025-04-17 16:14:31,499 | INFO     | -- intersect: -2860170825.520544
[2025-04-17 12:14:54] 2025-04-17 16:14:31,499 | INFO     | intersect: -2860170825.520544
[2025-04-17 12:14:54] 2025-04-17 16:14:31,501 | INFO     | chi2: 7.273107513544866
[2025-04-17 12:14:54] 2025-04-17 16:14:31,501 | INFO     | current chi2=7.273107513544866 (change=36.023261806113396 %)
[2025-04-17 12:14:54] 2025-04-17 16:14:31,503 | INFO     | sum of square deviations: 568623851358.627
[2025-04-17 12:14:54] 2025-04-17 16:14:31,582 | INFO     | sum of deviations: 643075978895.4668
[2025-04-17 12:14:54] 2025-04-17 16:14:31,582 | INFO     | mean x: 1744869079.8276143
[2025-04-17 12:14:54] 2025-04-17 16:14:31,582 | INFO     | mean y: 2551073.4714052286
[2025-04-17 12:14:54] 2025-04-17 16:14:31,582 | INFO     | -- intersect: -1970780486.3524642
[2025-04-17 12:14:54] 2025-04-17 16:14:31,583 | INFO     | intersect: -1970780486.3524642
[2025-04-17 12:14:54] 2025-04-17 16:14:31,584 | INFO     | chi2: 5.265823528708306
[2025-04-17 12:14:54] 2025-04-17 16:14:31,584 | INFO     | current chi2=5.265823528708306 (change=27.598711844948692 %)
[2025-04-17 12:14:54] 2025-04-17 16:14:31,586 | INFO     | sum of square deviations: 561683393044.7782
[2025-04-17 12:14:54] 2025-04-17 16:14:31,664 | INFO     | sum of deviations: 375424772195.87964
[2025-04-17 12:14:54] 2025-04-17 16:14:31,673 | INFO     | mean x: 1744869232.3330598
[2025-04-17 12:14:54] 2025-04-17 16:14:31,673 | INFO     | mean y: 2556954.6406890894
[2025-04-17 12:14:54] 2025-04-17 16:14:31,673 | INFO     | -- intersect: -1163699947.6850939
[2025-04-17 12:14:54] 2025-04-17 16:14:31,673 | INFO     | intersect: -1163699947.6850939
[2025-04-17 12:14:54] 2025-04-17 16:14:31,675 | INFO     | chi2: 3.7010282673603623
[2025-04-17 12:14:54] 2025-04-17 16:14:31,676 | INFO     | current chi2=3.7010282673603623 (change=29.716059659366977 %)
[2025-04-17 12:14:54] 2025-04-17 16:14:31,678 | INFO     | sum of square deviations: 554799707829.0317
[2025-04-17 12:14:54] 2025-04-17 16:14:31,778 | INFO     | sum of deviations: 168469493519.9829
[2025-04-17 12:14:54] 2025-04-17 16:14:31,779 | INFO     | mean x: 1744869384.8377266
[2025-04-17 12:14:54] 2025-04-17 16:14:31,779 | INFO     | mean y: 2561536.8780889623
[2025-04-17 12:14:54] 2025-04-17 16:14:31,779 | INFO     | -- intersect: -527282400.2652998
[2025-04-17 12:14:54] 2025-04-17 16:14:31,779 | INFO     | intersect: -527282400.2652998
[2025-04-17 12:14:54] 2025-04-17 16:14:31,806 | INFO     | chi2: 2.698460177446412
[2025-04-17 12:14:54] 2025-04-17 16:14:31,806 | INFO     | current chi2=2.698460177446412 (change=27.088906581872696 %)
[2025-04-17 12:14:54] 2025-04-17 16:14:31,814 | INFO     | sum of square deviations: 547972414732.54846
[2025-04-17 12:14:54] 2025-04-17 16:14:31,875 | INFO     | sum of deviations: 67281320154.56886
[2025-04-17 12:14:54] 2025-04-17 16:14:31,875 | INFO     | mean x: 1744869537.3432589
[2025-04-17 12:14:54] 2025-04-17 16:14:31,876 | INFO     | mean y: 2563796.063688999
[2025-04-17 12:14:54] 2025-04-17 16:14:31,876 | INFO     | -- intersect: -211675320.3838877
[2025-04-17 12:14:54] 2025-04-17 16:14:31,876 | INFO     | intersect: -211675320.3838877
[2025-04-17 12:14:54] 2025-04-17 16:14:31,878 | INFO     | chi2: 2.4714632456577275
[2025-04-17 12:14:54] 2025-04-17 16:14:31,878 | INFO     | current chi2=2.4714632456577275 (change=8.412091224688547 %)
[2025-04-17 12:14:54] 2025-04-17 16:14:31,878 | INFO     | left removable region: 50
[2025-04-17 12:14:54] 2025-04-17 16:14:31,880 | INFO     | sum of square deviations: 506893598951.94635
[2025-04-17 12:14:54] 2025-04-17 16:14:32,278 | INFO     | sum of deviations: 329972705288.8959
[2025-04-17 12:14:54] 2025-04-17 16:14:32,278 | INFO     | mean x: 1744870116.8429542
[2025-04-17 12:14:54] 2025-04-17 16:14:32,294 | INFO     | mean y: 2569020.7886247877
[2025-04-17 12:14:54] 2025-04-17 16:14:32,294 | INFO     | -- intersect: -1133289695.9575765
[2025-04-17 12:14:54] 2025-04-17 16:14:32,294 | INFO     | intersect: -1133289695.9575765
[2025-04-17 12:14:54] 2025-04-17 16:14:32,313 | INFO     | monitor loop #3321: job 0:6603701722 is in state 'finished'
[2025-04-17 12:14:54] 2025-04-17 16:14:32,313 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-17 12:14:54] 2025-04-17 16:14:32,336 | INFO     | chi2: 0.01776001503521632
[2025-04-17 12:14:54] 2025-04-17 16:14:32,337 | INFO     | -- intersect: -1133289695.9575765
[2025-04-17 12:14:54] 2025-04-17 16:14:32,337 | INFO     | current memory leak: 0.65 B/s (using 1178 data points, chi2=0.02)
[2025-04-17 12:14:54] 2025-04-17 16:14:32,352 | INFO     | ..............................
[2025-04-17 12:14:54] 2025-04-17 16:14:32,352 | INFO     | . Timing measurements:
[2025-04-17 12:14:54] 2025-04-17 16:14:32,370 | INFO     | . get job = 0 s
[2025-04-17 12:14:54] 2025-04-17 16:14:32,370 | INFO     | . initial setup = 10 s
[2025-04-17 12:14:54] 2025-04-17 16:14:32,370 | INFO     | . payload setup = 50 s
[2025-04-17 12:14:54] 2025-04-17 16:14:32,370 | INFO     | . stage-in = 0 s
[2025-04-17 12:14:54] 2025-04-17 16:14:32,370 | INFO     | . payload execution = 75288 s
[2025-04-17 12:14:54] 2025-04-17 16:14:32,377 | INFO     | . stage-out = 10 s
[2025-04-17 12:14:54] 2025-04-17 16:14:32,377 | INFO     | . log creation = 3 s
[2025-04-17 12:14:54] 2025-04-17 16:14:32,377 | INFO     | ..............................
[2025-04-17 12:14:54] 2025-04-17 16:14:32,995 | INFO     | 
[2025-04-17 12:14:54] 2025-04-17 16:14:32,995 | INFO     | job summary report
[2025-04-17 12:14:54] 2025-04-17 16:14:32,995 | INFO     | --------------------------------------------------
[2025-04-17 12:14:54] 2025-04-17 16:14:32,995 | INFO     | PanDA job id: 6603701722
[2025-04-17 12:14:54] 2025-04-17 16:14:32,995 | INFO     | task id: 44075483
[2025-04-17 12:14:54] 2025-04-17 16:14:32,995 | INFO     | errors: (none)
[2025-04-17 12:14:54] 2025-04-17 16:14:32,995 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-17 12:14:54] 2025-04-17 16:14:32,995 | INFO     | pilot state: finished 
[2025-04-17 12:14:54] 2025-04-17 16:14:32,996 | INFO     | transexitcode: 0
[2025-04-17 12:14:54] 2025-04-17 16:14:32,996 | INFO     | exeerrorcode: 0
[2025-04-17 12:14:54] 2025-04-17 16:14:32,996 | INFO     | exeerrordiag: 
[2025-04-17 12:14:54] 2025-04-17 16:14:32,996 | INFO     | exitcode: 0
[2025-04-17 12:14:54] 2025-04-17 16:14:32,996 | INFO     | exitmsg: OK
[2025-04-17 12:14:54] 2025-04-17 16:14:32,996 | INFO     | cpuconsumptiontime: 58457 s
[2025-04-17 12:14:54] 2025-04-17 16:14:32,996 | INFO     | nevents: 400
[2025-04-17 12:14:54] 2025-04-17 16:14:32,996 | INFO     | neventsw: 0
[2025-04-17 12:14:54] 2025-04-17 16:14:32,996 | INFO     | pid: 16421
[2025-04-17 12:14:54] 2025-04-17 16:14:32,996 | INFO     | pgrp: 16421
[2025-04-17 12:14:54] 2025-04-17 16:14:32,997 | INFO     | corecount: 10
[2025-04-17 12:14:54] 2025-04-17 16:14:32,997 | INFO     | event service: False
[2025-04-17 12:14:54] 2025-04-17 16:14:32,997 | INFO     | sizes: {0: 2416537, 1: 2417222, 2: 2417250, 3: 2417449, 14: 2417449, 25: 2417477, 36: 2417633, 45: 2417867, 47: 2417895, 75344: 2471836, 75345: 2471835, 75357: 249
[2025-04-17 12:14:54] 2025-04-17 16:14:32,997 | INFO     | --------------------------------------------------
[2025-04-17 12:14:54] 2025-04-17 16:14:32,997 | INFO     | 
[2025-04-17 12:14:54] 2025-04-17 16:14:32,997 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-04-17 12:14:54] 2025-04-17 16:14:33,213 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-17 12:14:54] 2025-04-17 16:14:33,214 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-17 12:14:54] 2025-04-17 16:14:33,214 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-17 12:14:54] 2025-04-17 16:14:33,214 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-17 12:14:54] 2025-04-17 16:14:33,214 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-17 12:14:54] 2025-04-17 16:14:33,214 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-17 12:14:54] 2025-04-17 16:14:33,214 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-17 12:14:54] 2025-04-17 16:14:33,214 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-17 12:14:54] 2025-04-17 16:14:33,214 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-17 12:14:54] 2025-04-17 16:14:33,215 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-17 12:14:54] 2025-04-17 16:14:33,215 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-17 12:14:54] 2025-04-17 16:14:33,215 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-17 12:14:54] 2025-04-17 16:14:33,215 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-17 12:14:54] 2025-04-17 16:14:33,215 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-17 12:14:54] 2025-04-17 16:14:33,215 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-17 12:14:54] 2025-04-17 16:14:33,215 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-17 12:14:54] 2025-04-17 16:14:33,215 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-17 12:14:54] 2025-04-17 16:14:33,215 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-17 12:14:54] 2025-04-17 16:14:33,233 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-17 12:14:54] 2025-04-17 16:14:33,233 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-17 12:14:54] 2025-04-17 16:14:33,233 | INFO     | job 6603701722 has completed (purged errors)
[2025-04-17 12:14:54] 2025-04-17 16:14:33,233 | INFO     | overall cleanup function is called
[2025-04-17 12:14:54] 2025-04-17 16:14:33,486 | INFO     | PID=30092 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-04-17 12:14:54] 2025-04-17 16:14:33,486 | INFO     | .. there are 40 such processes running
[2025-04-17 12:14:54] 2025-04-17 16:14:34,291 | INFO     | --- collectZombieJob: --- 10, [16421]
[2025-04-17 12:14:54] 2025-04-17 16:14:34,292 | INFO     | zombie collector waiting for pid 16421
[2025-04-17 12:14:54] 2025-04-17 16:14:34,292 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-17 12:14:54] 2025-04-17 16:14:34,292 | INFO     | collected zombie processes
[2025-04-17 12:14:54] 2025-04-17 16:14:34,292 | INFO     | will attempt to kill all subprocesses of pid=16421
[2025-04-17 12:14:54] 2025-04-17 16:14:34,292 | INFO     | killing group process 13055
[2025-04-17 12:14:54] 2025-04-17 16:14:34,292 | WARNING  | exception thrown when killing child group process under SIGTERM: [Errno 1] Operation not permitted
[2025-04-17 12:14:54] 2025-04-17 16:14:34,293 | WARNING  | exception thrown when killing child group process with SIGKILL: [Errno 1] Operation not permitted
[2025-04-17 12:14:54] 2025-04-17 16:14:38,059 | INFO     | process IDs to be killed: [16421] (in reverse order)
[2025-04-17 12:14:54] 2025-04-17 16:14:38,735 | WARNING  | found no corresponding commands to process id(s)
[2025-04-17 12:14:54] 2025-04-17 16:14:38,735 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-17 12:14:54] 2025-04-17 16:14:38,749 | INFO     | did not find any defunct processes belonging to 16421
[2025-04-17 12:14:54] 2025-04-17 16:14:38,763 | INFO     | did not find any defunct processes belonging to 16421
[2025-04-17 12:14:54] 2025-04-17 16:14:38,764 | INFO     | ready for new job
[2025-04-17 12:14:54] 2025-04-17 16:14:38,764 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-17 12:14:54] 2025-04-17 16:14:38,768 | INFO     | **************************************
[2025-04-17 12:14:54] 2025-04-17 16:14:38,768 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-17 12:14:54] 2025-04-17 16:14:38,768 | INFO     | **************************************
[2025-04-17 12:14:54] 2025-04-17 16:14:38,768 | INFO     | 
[2025-04-17 12:14:54] 2025-04-17 16:14:38,775 | INFO     | architecture information:
[2025-04-17 12:14:54] 2025-04-17 16:14:38,784 | INFO     | executing command: cat /etc/os-release
[2025-04-17 12:14:54] 2025-04-17 16:14:38,917 | INFO     | cat /etc/os-release:
[2025-04-17 12:14:54] NAME="CentOS Linux"
[2025-04-17 12:14:54] VERSION="7 (Core)"
[2025-04-17 12:14:54] ID="centos"
[2025-04-17 12:14:54] ID_LIKE="rhel fedora"
[2025-04-17 12:14:54] VERSION_ID="7"
[2025-04-17 12:14:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-17 12:14:54] ANSI_COLOR="0;31"
[2025-04-17 12:14:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-17 12:14:54] HOME_URL="https://www.centos.org/"
[2025-04-17 12:14:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-17 12:14:54] 
[2025-04-17 12:14:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-17 12:14:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-17 12:14:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-17 12:14:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-17 12:14:54] 
[2025-04-17 12:14:54] 2025-04-17 16:14:38,918 | INFO     | **************************************
[2025-04-17 12:14:54] 2025-04-17 16:14:39,422 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-04-17 12:14:54] 2025-04-17 16:14:39,818 | INFO     | sufficient remaining disk space (56946065408 B)
[2025-04-17 12:14:54] 2025-04-17 16:14:39,818 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-17 12:14:54] 2025-04-17 16:14:39,818 | INFO     | current server update state: UPDATING_FINAL
[2025-04-17 12:14:54] 2025-04-17 16:14:39,818 | INFO     | update_server=False
[2025-04-17 12:14:54] 2025-04-17 16:14:39,818 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-17 12:14:54] 2025-04-17 16:14:39,819 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-17 12:14:54] 2025-04-17 16:14:39,819 | INFO     | found 0 job(s) in 20 queues
[2025-04-17 12:14:54] 2025-04-17 16:14:39,819 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-17 12:14:54] 2025-04-17 16:14:39,819 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-17 12:14:54] 2025-04-17 16:14:39,832 | INFO     | all data control threads have been joined
[2025-04-17 12:14:54] 2025-04-17 16:14:39,904 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-04-17 12:14:54] 2025-04-17 16:14:39,904 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-04-17 12:14:54] 2025-04-17 16:14:39,904 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-17 12:14:54] 2025-04-17 16:14:39,904 | INFO     | will abort loop
[2025-04-17 12:14:54] 2025-04-17 16:14:40,063 | INFO     | all payload control threads have been joined
[2025-04-17 12:14:54] 2025-04-17 16:14:40,181 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-17 12:14:54] 2025-04-17 16:14:40,825 | INFO     | [job] retrieve thread has finished
[2025-04-17 12:14:54] 2025-04-17 16:14:40,838 | INFO     | [data] control thread has finished
[2025-04-17 12:14:54] 2025-04-17 16:14:40,942 | INFO     | [job] job monitor thread has finished
[2025-04-17 12:14:54] 2025-04-17 16:14:41,069 | INFO     | [payload] control thread has finished
[2025-04-17 12:14:54] 2025-04-17 16:14:41,116 | INFO     | [payload] failed_post thread has finished
[2025-04-17 12:14:54] 2025-04-17 16:14:41,241 | INFO     | all job control threads have been joined
[2025-04-17 12:14:54] 2025-04-17 16:14:41,420 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-17 12:14:54] 2025-04-17 16:14:41,469 | INFO     | [payload] validate_pre thread has finished
[2025-04-17 12:14:54] 2025-04-17 16:14:41,562 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-17 12:14:54] 2025-04-17 16:14:41,563 | INFO     | [payload] validate_post thread has finished
[2025-04-17 12:14:54] 2025-04-17 16:14:41,882 | INFO     | [job] validate thread has finished
[2025-04-17 12:14:54] 2025-04-17 16:14:41,890 | INFO     | [data] copytool_in thread has finished
[2025-04-17 12:14:54] 2025-04-17 16:14:41,899 | INFO     | [job] create_data_payload thread has finished
[2025-04-17 12:14:54] 2025-04-17 16:14:41,907 | INFO     | [payload] execute_payloads thread has finished
[2025-04-17 12:14:54] 2025-04-17 16:14:42,064 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-17 12:14:54] 2025-04-17 16:14:42,188 | INFO     | [data] copytool_out thread has finished
[2025-04-17 12:14:54] 2025-04-17 16:14:42,248 | INFO     | [job] control thread has finished
[2025-04-17 12:14:54] 2025-04-17 16:14:43,070 | INFO     | [job] queue monitor thread has finished
[2025-04-17 12:14:54] 2025-04-17 16:14:45,571 | INFO     | [data] queue_monitor thread has finished
[2025-04-17 12:14:54] 2025-04-17 16:14:46,410 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140072626390848)>', '<ExcThread(monitor, started 140072322045696)>']
[2025-04-17 12:14:54] 2025-04-17 16:14:46,870 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-17 12:14:54] 2025-04-17 16:14:46,871 | INFO     | [monitor] control thread has ended
[2025-04-17 12:14:54] 2025-04-17 16:14:51,435 | INFO     | all workflow threads have been joined
[2025-04-17 12:14:54] 2025-04-17 16:14:51,436 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-17 12:14:54] 2025-04-17 16:14:51,440 | INFO     | traces error code: 0
[2025-04-17 12:14:54] 2025-04-17 16:14:51,448 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-17 12:14:54] 2025-04-17 16:14:52,366 [wrapper] ==== pilot stdout END ====
[2025-04-17 12:14:54] 2025-04-17 16:14:52,406 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-17 12:14:54] 2025-04-17 16:14:52,444 [wrapper] pilotpid: 30092
[2025-04-17 12:14:54] 2025-04-17 16:14:52,485 [wrapper] Pilot exit status: 0
[2025-04-17 12:14:54] 2025-04-17 16:14:52,690 [wrapper] pandaids: 6603701722 6603701722
[2025-04-17 12:14:54] 2025-04-17 16:14:53,648 [wrapper] cleanup supervisor_pilot 25903 30093
[2025-04-17 12:14:54] 2025-04-17 16:14:53,652 [wrapper] Test setup, not cleaning
[2025-04-17 12:14:54] 2025-04-17 16:14:53,655 [wrapper] apfmon messages muted
[2025-04-17 12:14:54] 2025-04-17 16:14:53,683 [wrapper] ==== wrapper stdout END ====
[2025-04-17 12:14:54] 2025-04-17 16:14:53,731 [wrapper] ==== wrapper stderr END ====
[2025-04-17 12:14:54]  *** Error codes and diagnostics ***
[2025-04-17 12:14:54]     "exeErrorCode": 0,
[2025-04-17 12:14:54]     "exeErrorDiag": "",
[2025-04-17 12:14:54]     "pilotErrorCode": 0,
[2025-04-17 12:14:54]     "pilotErrorDiag": "",
[2025-04-17 12:14:55]  *** Listing of results directory ***
[2025-04-17 12:14:55] total 639084
[2025-04-17 12:14:55] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-04-17 12:14:55] -rw-r--r-- 1 boincer umatlas    495897 Apr 16 02:08 pilot3.tar.gz
[2025-04-17 12:14:55] -rw-r--r-- 1 boincer umatlas      5111 Apr 16 02:29 queuedata.json
[2025-04-17 12:14:55] -rwx------ 1 boincer umatlas     37140 Apr 16 02:30 runpilot2-wrapper.sh
[2025-04-17 12:14:55] -rw-r--r-- 1 boincer umatlas       100 Apr 16 05:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-17 12:14:55] -rwxr-xr-x 1 boincer umatlas      7986 Apr 16 05:33 run_atlas
[2025-04-17 12:14:55] -rw-r--r-- 1 boincer umatlas       105 Apr 16 05:33 job.xml
[2025-04-17 12:14:55] -rw-r--r-- 3 boincer umatlas 223323548 Apr 16 05:33 EVNT.44075481._001449.pool.root.1
[2025-04-17 12:14:55] -rw-r--r-- 3 boincer umatlas 223323548 Apr 16 05:33 ATLAS.root_0
[2025-04-17 12:14:55] -rw-r--r-- 2 boincer umatlas     17569 Apr 16 05:33 start_atlas.sh
[2025-04-17 12:14:55] drwxrwx--x 2 boincer umatlas      4096 Apr 16 05:33 shared
[2025-04-17 12:14:55] -rw-r--r-- 2 boincer umatlas    508899 Apr 16 05:33 input.tar.gz
[2025-04-17 12:14:55] -rw-r--r-- 1 boincer umatlas         0 Apr 16 05:33 boinc_lockfile
[2025-04-17 12:14:55] -rw-r--r-- 1 boincer umatlas      2578 Apr 16 15:14 pandaJob.out
[2025-04-17 12:14:55] -rw------- 1 boincer umatlas       467 Apr 16 15:14 setup.sh.local
[2025-04-17 12:14:55] -rw------- 1 boincer umatlas    986568 Apr 16 15:15 agis_schedconf.cvmfs.json
[2025-04-17 12:14:55] -rw------- 1 boincer umatlas 192458710 Apr 17 12:09 HITS.44075483._036875.pool.root.1
[2025-04-17 12:14:55] -rw-r--r-- 1 boincer umatlas       533 Apr 17 12:10 boinc_task_state.xml
[2025-04-17 12:14:55] -rw------- 1 boincer umatlas      1058 Apr 17 12:13 memory_monitor_summary.json
[2025-04-17 12:14:55] -rw------- 1 boincer umatlas   1618536 Apr 17 12:13 agis_ddmendpoints.agis.ALL.json
[2025-04-17 12:14:55] -rw------- 1 boincer umatlas    861449 Apr 17 12:13 log.44075483._036875.job.log.tgz.1
[2025-04-17 12:14:55] -rw-r--r-- 1 boincer umatlas      6229 Apr 17 12:13 init_data.xml
[2025-04-17 12:14:55] -rw------- 1 boincer umatlas      7760 Apr 17 12:14 heartbeat.json
[2025-04-17 12:14:55] -rw------- 1 boincer umatlas        97 Apr 17 12:14 pilot_heartbeat.json
[2025-04-17 12:14:55] -rw-r--r-- 1 boincer umatlas      8192 Apr 17 12:14 boinc_mmap_file
[2025-04-17 12:14:55] -rw-r--r-- 1 boincer umatlas        30 Apr 17 12:14 wrapper_checkpoint.txt
[2025-04-17 12:14:55] -rw------- 1 boincer umatlas      4662 Apr 17 12:14 pilotlog.txt
[2025-04-17 12:14:55] -rw------- 1 boincer umatlas   4867534 Apr 17 12:14 log.44075483._036875.job.log.1
[2025-04-17 12:14:55] -rw------- 1 boincer umatlas       357 Apr 17 12:14 output.list
[2025-04-17 12:14:55] -rw-r--r-- 1 boincer umatlas       620 Apr 17 12:14 runtime_log
[2025-04-17 12:14:55] -rw------- 1 boincer umatlas   5744640 Apr 17 12:14 result.tar.gz
[2025-04-17 12:14:55] -rw------- 1 boincer umatlas       788 Apr 17 12:14 tVKLDmHTBP7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmMF2KDmVJfPCo.diag
[2025-04-17 12:14:55] -rw-r--r-- 1 boincer umatlas     11501 Apr 17 12:14 runtime_log.err
[2025-04-17 12:14:55] -rw-r--r-- 1 boincer umatlas     23431 Apr 17 12:14 stderr.txt
[2025-04-17 12:14:55] HITS file was successfully produced:
[2025-04-17 12:14:55] -rw------- 1 boincer umatlas 192458710 Apr 17 12:09 shared/HITS.pool.root.1
[2025-04-17 12:14:55]  *** Contents of shared directory: ***
[2025-04-17 12:14:55] total 412176
[2025-04-17 12:14:55] -rw-r--r-- 3 boincer umatlas 223323548 Apr 16 05:33 ATLAS.root_0
[2025-04-17 12:14:55] -rw-r--r-- 2 boincer umatlas     17569 Apr 16 05:33 start_atlas.sh
[2025-04-17 12:14:55] -rw-r--r-- 2 boincer umatlas    508899 Apr 16 05:33 input.tar.gz
[2025-04-17 12:14:55] -rw------- 1 boincer umatlas 192458710 Apr 17 12:09 HITS.pool.root.1
[2025-04-17 12:14:55] -rw------- 1 boincer umatlas   5744640 Apr 17 12:14 result.tar.gz
12:14:57 (10041): run_atlas exited; CPU time 61120.572222
12:14:57 (10041): called boinc_finish(0)

</stderr_txt>
]]>

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