Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:18:03 (21340): wrapper (7.7.26015): starting
05:18:03 (21340): wrapper: running run_atlas (--nthreads 10)
[2025-04-16 05:18:03] Arguments: --nthreads 10
[2025-04-16 05:18:03] Threads: 10
[2025-04-16 05:18:03] Checking for CVMFS
[2025-04-16 05:18:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-16 05:18:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-16 05:18:05] Running cvmfs_config stat atlas.cern.ch
[2025-04-16 05:18:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-16 05:18:08] 2.11.2.0 1570 38092 235724 144919 3 508 16467078 18432000 20512 130560 0 154978927 98.894 394428218 35897 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-16 05:18:08] CVMFS is ok
[2025-04-16 05:18:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-16 05:18:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-16 05:18:08] Further information can be found at the LHC@home message board.
[2025-04-16 05:18:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-16 05:18:08] Checking for apptainer binary...
[2025-04-16 05:18:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-16 05:18:08] Running /usr/bin/apptainer --version
[2025-04-16 05:18:08] apptainer version 1.3.2-1.el7
[2025-04-16 05:18:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-16 05:18:39] c-210-9.aglt2.org
[2025-04-16 05:18:39] apptainer works
[2025-04-16 05:18:39] Set ATHENA_PROC_NUMBER=10
[2025-04-16 05:18:39] Set ATHENA_CORE_NUMBER=10
[2025-04-16 05:18:39] Starting ATLAS job with PandaID=6603701625
[2025-04-16 05:18:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:00:06 (21340): BOINC client no longer exists - exiting
15:00:06 (21340): timer handler: client dead, exiting
15:13:44 (10040): wrapper (7.7.26015): starting
15:13:45 (10040): wrapper: running run_atlas (--nthreads 10)
[2025-04-16 15:13:45] Arguments: --nthreads 10
[2025-04-16 15:13:45] Threads: 10
[2025-04-16 15:13:45] This job has been restarted, cleaning up previous attempt
[2025-04-16 15:13:45] Checking for CVMFS
[2025-04-16 15:13:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-16 15:13:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-16 15:13:46] Running cvmfs_config stat atlas.cern.ch
[2025-04-16 15:13:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-16 15:13:48] 2.11.2.0 1570 38688 232260 144935 0 220 10575290 18432000 18226 130560 0 157401870 98.899 397902053 35900 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-16 15:13:48] CVMFS is ok
[2025-04-16 15:13:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-16 15:13:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-16 15:13:48] Further information can be found at the LHC@home message board.
[2025-04-16 15:13:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-16 15:13:48] Checking for apptainer binary...
[2025-04-16 15:13:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-16 15:13:48] Running /usr/bin/apptainer --version
[2025-04-16 15:13:48] apptainer version 1.3.2-1.el7
[2025-04-16 15:13:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-16 15:14:06] c-210-9.aglt2.org
[2025-04-16 15:14:06] apptainer works
[2025-04-16 15:14:06] Set ATHENA_PROC_NUMBER=10
[2025-04-16 15:14:06] Set ATHENA_CORE_NUMBER=10
[2025-04-16 15:14:06] Starting ATLAS job with PandaID=6603701625
[2025-04-16 15:14:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-17 12:20:05]  *** The last 200 lines of the pilot log: ***
[2025-04-17 12:20:05] 2025-04-17 16:19:43,789 | INFO     | intersect: -4946892773.762824
[2025-04-17 12:20:05] 2025-04-17 16:19:43,791 | INFO     | chi2: 8.975889685802175
[2025-04-17 12:20:05] 2025-04-17 16:19:43,791 | INFO     | current chi2=8.975889685802175 (change=14.72534161349494 %)
[2025-04-17 12:20:05] 2025-04-17 16:19:43,791 | INFO     | right removable region: 1233
[2025-04-17 12:20:05] 2025-04-17 16:19:43,793 | INFO     | sum of square deviations: 582672448189.2788
[2025-04-17 12:20:05] 2025-04-17 16:19:43,835 | INFO     | sum of deviations: 1064696855396.9133
[2025-04-17 12:20:05] 2025-04-17 16:19:43,835 | INFO     | mean x: 1744869080.8768234
[2025-04-17 12:20:05] 2025-04-17 16:19:43,835 | INFO     | mean y: 2541254.538897893
[2025-04-17 12:20:05] 2025-04-17 16:19:43,835 | INFO     | -- intersect: -3185796600.223323
[2025-04-17 12:20:05] 2025-04-17 16:19:43,835 | INFO     | intersect: -3185796600.223323
[2025-04-17 12:20:05] 2025-04-17 16:19:43,837 | INFO     | chi2: 6.432694063448066
[2025-04-17 12:20:05] 2025-04-17 16:19:43,837 | INFO     | current chi2=6.432694063448066 (change=38.88675017551651 %)
[2025-04-17 12:20:05] 2025-04-17 16:19:43,839 | INFO     | sum of square deviations: 575617872142.2599
[2025-04-17 12:20:05] 2025-04-17 16:19:43,878 | INFO     | sum of deviations: 762589245151.6711
[2025-04-17 12:20:05] 2025-04-17 16:19:43,878 | INFO     | mean x: 1744869233.3824248
[2025-04-17 12:20:05] 2025-04-17 16:19:43,878 | INFO     | mean y: 2547784.734743694
[2025-04-17 12:20:05] 2025-04-17 16:19:43,879 | INFO     | -- intersect: -2309087374.5791173
[2025-04-17 12:20:05] 2025-04-17 16:19:43,879 | INFO     | intersect: -2309087374.5791173
[2025-04-17 12:20:05] 2025-04-17 16:19:43,880 | INFO     | chi2: 4.4267756345130085
[2025-04-17 12:20:05] 2025-04-17 16:19:43,881 | INFO     | current chi2=4.4267756345130085 (change=31.18317782798209 %)
[2025-04-17 12:20:05] 2025-04-17 16:19:43,882 | INFO     | sum of square deviations: 568620459957.6663
[2025-04-17 12:20:05] 2025-04-17 16:19:43,922 | INFO     | sum of deviations: 494466159291.88293
[2025-04-17 12:20:05] 2025-04-17 16:19:43,922 | INFO     | mean x: 1744869385.888072
[2025-04-17 12:20:05] 2025-04-17 16:19:43,922 | INFO     | mean y: 2553628.327614379
[2025-04-17 12:20:05] 2025-04-17 16:19:43,922 | INFO     | -- intersect: -1514765786.7533963
[2025-04-17 12:20:05] 2025-04-17 16:19:43,923 | INFO     | intersect: -1514765786.7533963
[2025-04-17 12:20:05] 2025-04-17 16:19:43,925 | INFO     | chi2: 2.866933164508247
[2025-04-17 12:20:05] 2025-04-17 16:19:43,926 | INFO     | current chi2=2.866933164508247 (change=35.23653780515941 %)
[2025-04-17 12:20:05] 2025-04-17 16:19:43,927 | INFO     | sum of square deviations: 561679979072.9927
[2025-04-17 12:20:05] 2025-04-17 16:19:43,965 | INFO     | sum of deviations: 293608206773.3284
[2025-04-17 12:20:05] 2025-04-17 16:19:43,965 | INFO     | mean x: 1744869538.3937654
[2025-04-17 12:20:05] 2025-04-17 16:19:43,965 | INFO     | mean y: 2558039.1222313372
[2025-04-17 12:20:05] 2025-04-17 16:19:43,965 | INFO     | -- intersect: -909541439.7780523
[2025-04-17 12:20:05] 2025-04-17 16:19:43,966 | INFO     | intersect: -909541439.7780523
[2025-04-17 12:20:05] 2025-04-17 16:19:43,967 | INFO     | chi2: 1.9301457676959537
[2025-04-17 12:20:05] 2025-04-17 16:19:43,968 | INFO     | current chi2=1.9301457676959537 (change=32.6755924557096 %)
[2025-04-17 12:20:05] 2025-04-17 16:19:43,969 | INFO     | sum of square deviations: 554796271286.5377
[2025-04-17 12:20:05] 2025-04-17 16:19:44,011 | INFO     | sum of deviations: 193440441791.10995
[2025-04-17 12:20:05] 2025-04-17 16:19:44,012 | INFO     | mean x: 1744869690.898682
[2025-04-17 12:20:05] 2025-04-17 16:19:44,012 | INFO     | mean y: 2560257.1309719933
[2025-04-17 12:20:05] 2025-04-17 16:19:44,012 | INFO     | -- intersect: -605822281.3685234
[2025-04-17 12:20:05] 2025-04-17 16:19:44,012 | INFO     | intersect: -605822281.3685234
[2025-04-17 12:20:05] 2025-04-17 16:19:44,014 | INFO     | chi2: 1.710156761272939
[2025-04-17 12:20:05] 2025-04-17 16:19:44,014 | INFO     | current chi2=1.710156761272939 (change=11.397533290224978 %)
[2025-04-17 12:20:05] 2025-04-17 16:19:44,014 | INFO     | left removable region: 50
[2025-04-17 12:20:05] 2025-04-17 16:19:44,016 | INFO     | sum of square deviations: 513370425013.8787
[2025-04-17 12:20:05] 2025-04-17 16:19:44,055 | INFO     | sum of deviations: 296168550575.72034
[2025-04-17 12:20:05] 2025-04-17 16:19:44,055 | INFO     | mean x: 1744870270.4184277
[2025-04-17 12:20:05] 2025-04-17 16:19:44,055 | INFO     | mean y: 2565306.7743026204
[2025-04-17 12:20:05] 2025-04-17 16:19:44,056 | INFO     | -- intersect: -1004067864.4266293
[2025-04-17 12:20:05] 2025-04-17 16:19:44,056 | INFO     | intersect: -1004067864.4266293
[2025-04-17 12:20:05] 2025-04-17 16:19:44,057 | INFO     | chi2: 0.015463313739966832
[2025-04-17 12:20:05] 2025-04-17 16:19:44,058 | INFO     | -- intersect: -1004067864.4266293
[2025-04-17 12:20:05] 2025-04-17 16:19:44,058 | INFO     | current memory leak: 0.58 B/s (using 1183 data points, chi2=0.02)
[2025-04-17 12:20:05] 2025-04-17 16:19:44,059 | INFO     | ..............................
[2025-04-17 12:20:05] 2025-04-17 16:19:44,060 | INFO     | . Timing measurements:
[2025-04-17 12:20:05] 2025-04-17 16:19:44,060 | INFO     | . get job = 1 s
[2025-04-17 12:20:05] 2025-04-17 16:19:44,060 | INFO     | . initial setup = 8 s
[2025-04-17 12:20:05] 2025-04-17 16:19:44,060 | INFO     | . payload setup = 50 s
[2025-04-17 12:20:05] 2025-04-17 16:19:44,060 | INFO     | . stage-in = 0 s
[2025-04-17 12:20:05] 2025-04-17 16:19:44,060 | INFO     | . payload execution = 75614 s
[2025-04-17 12:20:05] 2025-04-17 16:19:44,060 | INFO     | . stage-out = 7 s
[2025-04-17 12:20:05] 2025-04-17 16:19:44,060 | INFO     | . log creation = 2 s
[2025-04-17 12:20:05] 2025-04-17 16:19:44,061 | INFO     | ..............................
[2025-04-17 12:20:05] 2025-04-17 16:19:44,193 | INFO     | 
[2025-04-17 12:20:05] 2025-04-17 16:19:44,194 | INFO     | job summary report
[2025-04-17 12:20:05] 2025-04-17 16:19:44,194 | INFO     | --------------------------------------------------
[2025-04-17 12:20:05] 2025-04-17 16:19:44,194 | INFO     | PanDA job id: 6603701625
[2025-04-17 12:20:05] 2025-04-17 16:19:44,194 | INFO     | task id: 44075483
[2025-04-17 12:20:05] 2025-04-17 16:19:44,194 | INFO     | errors: (none)
[2025-04-17 12:20:05] 2025-04-17 16:19:44,194 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-17 12:20:05] 2025-04-17 16:19:44,194 | INFO     | pilot state: finished 
[2025-04-17 12:20:05] 2025-04-17 16:19:44,195 | INFO     | transexitcode: 0
[2025-04-17 12:20:05] 2025-04-17 16:19:44,195 | INFO     | exeerrorcode: 0
[2025-04-17 12:20:05] 2025-04-17 16:19:44,195 | INFO     | exeerrordiag: 
[2025-04-17 12:20:05] 2025-04-17 16:19:44,195 | INFO     | exitcode: 0
[2025-04-17 12:20:05] 2025-04-17 16:19:44,195 | INFO     | exitmsg: OK
[2025-04-17 12:20:05] 2025-04-17 16:19:44,195 | INFO     | cpuconsumptiontime: 58934 s
[2025-04-17 12:20:05] 2025-04-17 16:19:44,195 | INFO     | nevents: 400
[2025-04-17 12:20:05] 2025-04-17 16:19:44,195 | INFO     | neventsw: 0
[2025-04-17 12:20:05] 2025-04-17 16:19:44,195 | INFO     | pid: 16506
[2025-04-17 12:20:05] 2025-04-17 16:19:44,196 | INFO     | pgrp: 16506
[2025-04-17 12:20:05] 2025-04-17 16:19:44,196 | INFO     | corecount: 10
[2025-04-17 12:20:05] 2025-04-17 16:19:44,196 | INFO     | event service: False
[2025-04-17 12:20:05] 2025-04-17 16:19:44,196 | INFO     | sizes: {0: 2416487, 1: 2417172, 2: 2417200, 3: 2417399, 15: 2417399, 26: 2417427, 37: 2417583, 46: 2417817, 47: 2417845, 75669: 2472010, 75670: 2472009, 75678: 249
[2025-04-17 12:20:05] 2025-04-17 16:19:44,196 | INFO     | --------------------------------------------------
[2025-04-17 12:20:05] 2025-04-17 16:19:44,196 | INFO     | 
[2025-04-17 12:20:05] 2025-04-17 16:19:44,196 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-04-17 12:20:05] 2025-04-17 16:19:44,229 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-17 12:20:05] 2025-04-17 16:19:44,230 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-17 12:20:05] 2025-04-17 16:19:44,230 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-17 12:20:05] 2025-04-17 16:19:44,230 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-17 12:20:05] 2025-04-17 16:19:44,230 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-17 12:20:05] 2025-04-17 16:19:44,230 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-17 12:20:05] 2025-04-17 16:19:44,231 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-17 12:20:05] 2025-04-17 16:19:44,231 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-17 12:20:05] 2025-04-17 16:19:44,231 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-17 12:20:05] 2025-04-17 16:19:44,231 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-17 12:20:05] 2025-04-17 16:19:44,231 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-17 12:20:05] 2025-04-17 16:19:44,231 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-17 12:20:05] 2025-04-17 16:19:44,231 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-17 12:20:05] 2025-04-17 16:19:44,231 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-17 12:20:05] 2025-04-17 16:19:44,232 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-17 12:20:05] 2025-04-17 16:19:44,232 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-17 12:20:05] 2025-04-17 16:19:44,232 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-17 12:20:05] 2025-04-17 16:19:44,232 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-17 12:20:05] 2025-04-17 16:19:44,232 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-17 12:20:05] 2025-04-17 16:19:44,233 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-17 12:20:05] 2025-04-17 16:19:44,233 | INFO     | job 6603701625 has completed (purged errors)
[2025-04-17 12:20:05] 2025-04-17 16:19:44,233 | INFO     | overall cleanup function is called
[2025-04-17 12:20:05] 2025-04-17 16:19:45,242 | INFO     | --- collectZombieJob: --- 10, [16506]
[2025-04-17 12:20:05] 2025-04-17 16:19:45,243 | INFO     | zombie collector waiting for pid 16506
[2025-04-17 12:20:05] 2025-04-17 16:19:45,243 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-17 12:20:05] 2025-04-17 16:19:45,243 | INFO     | collected zombie processes
[2025-04-17 12:20:05] 2025-04-17 16:19:45,243 | INFO     | will attempt to kill all subprocesses of pid=16506
[2025-04-17 12:20:05] 2025-04-17 16:19:47,122 | INFO     | process IDs to be killed: [16506] (in reverse order)
[2025-04-17 12:20:05] 2025-04-17 16:19:47,305 | WARNING  | found no corresponding commands to process id(s)
[2025-04-17 12:20:05] 2025-04-17 16:19:47,306 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-17 12:20:05] 2025-04-17 16:19:47,448 | INFO     | did not find any defunct processes belonging to 16506
[2025-04-17 12:20:05] 2025-04-17 16:19:47,581 | INFO     | did not find any defunct processes belonging to 16506
[2025-04-17 12:20:05] 2025-04-17 16:19:47,581 | INFO     | ready for new job
[2025-04-17 12:20:05] 2025-04-17 16:19:47,582 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-17 12:20:05] 2025-04-17 16:19:47,643 | INFO     | **************************************
[2025-04-17 12:20:05] 2025-04-17 16:19:47,643 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-17 12:20:05] 2025-04-17 16:19:47,643 | INFO     | **************************************
[2025-04-17 12:20:05] 2025-04-17 16:19:47,643 | INFO     | 
[2025-04-17 12:20:05] 2025-04-17 16:19:47,670 | INFO     | architecture information:
[2025-04-17 12:20:05] 2025-04-17 16:19:47,694 | INFO     | executing command: cat /etc/os-release
[2025-04-17 12:20:05] 2025-04-17 16:19:47,886 | INFO     | cat /etc/os-release:
[2025-04-17 12:20:05] NAME="CentOS Linux"
[2025-04-17 12:20:05] VERSION="7 (Core)"
[2025-04-17 12:20:05] ID="centos"
[2025-04-17 12:20:05] ID_LIKE="rhel fedora"
[2025-04-17 12:20:05] VERSION_ID="7"
[2025-04-17 12:20:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-17 12:20:05] ANSI_COLOR="0;31"
[2025-04-17 12:20:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-17 12:20:05] HOME_URL="https://www.centos.org/"
[2025-04-17 12:20:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-17 12:20:05] 
[2025-04-17 12:20:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-17 12:20:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-17 12:20:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-17 12:20:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-17 12:20:05] 
[2025-04-17 12:20:05] 2025-04-17 16:19:47,887 | INFO     | **************************************
[2025-04-17 12:20:05] 2025-04-17 16:19:48,391 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-04-17 12:20:05] 2025-04-17 16:19:48,659 | INFO     | sufficient remaining disk space (56734253056 B)
[2025-04-17 12:20:05] 2025-04-17 16:19:48,660 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-17 12:20:05] 2025-04-17 16:19:48,660 | INFO     | current server update state: UPDATING_FINAL
[2025-04-17 12:20:05] 2025-04-17 16:19:48,660 | INFO     | update_server=False
[2025-04-17 12:20:05] 2025-04-17 16:19:48,660 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-17 12:20:05] 2025-04-17 16:19:48,670 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-17 12:20:05] 2025-04-17 16:19:48,801 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-04-17 12:20:05] 2025-04-17 16:19:48,801 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-04-17 12:20:05] 2025-04-17 16:19:48,801 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-17 12:20:05] 2025-04-17 16:19:48,802 | INFO     | will abort loop
[2025-04-17 12:20:05] 2025-04-17 16:19:48,867 | INFO     | all data control threads have been joined
[2025-04-17 12:20:05] 2025-04-17 16:19:49,238 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-17 12:20:05] 2025-04-17 16:19:49,367 | INFO     | all job control threads have been joined
[2025-04-17 12:20:05] 2025-04-17 16:19:49,695 | INFO     | [job] retrieve thread has finished
[2025-04-17 12:20:05] 2025-04-17 16:19:49,817 | INFO     | [job] job monitor thread has finished
[2025-04-17 12:20:05] 2025-04-17 16:19:49,856 | INFO     | [payload] validate_post thread has finished
[2025-04-17 12:20:05] 2025-04-17 16:19:49,873 | INFO     | [data] control thread has finished
[2025-04-17 12:20:05] 2025-04-17 16:19:49,940 | INFO     | [data] copytool_in thread has finished
[2025-04-17 12:20:05] 2025-04-17 16:19:50,001 | INFO     | [job] create_data_payload thread has finished
[2025-04-17 12:20:05] 2025-04-17 16:19:50,001 | INFO     | [payload] execute_payloads thread has finished
[2025-04-17 12:20:05] 2025-04-17 16:19:50,154 | INFO     | [payload] validate_pre thread has finished
[2025-04-17 12:20:05] 2025-04-17 16:19:50,243 | INFO     | [job] queue monitor thread has finished
[2025-04-17 12:20:05] 2025-04-17 16:19:50,332 | INFO     | all payload control threads have been joined
[2025-04-17 12:20:05] 2025-04-17 16:19:50,373 | INFO     | [job] control thread has finished
[2025-04-17 12:20:05] 2025-04-17 16:19:50,505 | INFO     | PID=30785 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-04-17 12:20:05] 2025-04-17 16:19:50,505 | INFO     | .. there are 40 such processes running
[2025-04-17 12:20:05] 2025-04-17 16:19:50,506 | INFO     | found 0 job(s) in 20 queues
[2025-04-17 12:20:05] 2025-04-17 16:19:50,506 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-17 12:20:05] 2025-04-17 16:19:50,506 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-17 12:20:05] 2025-04-17 16:19:50,654 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-17 12:20:05] 2025-04-17 16:19:50,705 | INFO     | [data] copytool_out thread has finished
[2025-04-17 12:20:05] 2025-04-17 16:19:50,723 | INFO     | [payload] failed_post thread has finished
[2025-04-17 12:20:05] 2025-04-17 16:19:51,000 | INFO     | [job] validate thread has finished
[2025-04-17 12:20:05] 2025-04-17 16:19:51,338 | INFO     | [payload] control thread has finished
[2025-04-17 12:20:05] 2025-04-17 16:19:51,365 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-17 12:20:05] 2025-04-17 16:19:55,373 | INFO     | [data] queue_monitor thread has finished
[2025-04-17 12:20:05] 2025-04-17 16:19:56,938 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139686633854784)>', '<ExcThread(monitor, started 139686320252672)>']
[2025-04-17 12:20:05] 2025-04-17 16:19:57,548 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-17 12:20:05] 2025-04-17 16:19:57,549 | INFO     | [monitor] control thread has ended
[2025-04-17 12:20:05] 2025-04-17 16:20:01,964 | INFO     | all workflow threads have been joined
[2025-04-17 12:20:05] 2025-04-17 16:20:01,964 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-17 12:20:05] 2025-04-17 16:20:01,964 | INFO     | traces error code: 0
[2025-04-17 12:20:05] 2025-04-17 16:20:01,964 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-17 12:20:05] 2025-04-17 16:20:02,689 [wrapper] ==== pilot stdout END ====
[2025-04-17 12:20:05] 2025-04-17 16:20:02,708 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-17 12:20:05] 2025-04-17 16:20:02,757 [wrapper] pilotpid: 30785
[2025-04-17 12:20:05] 2025-04-17 16:20:02,816 [wrapper] Pilot exit status: 0
[2025-04-17 12:20:05] 2025-04-17 16:20:03,029 [wrapper] pandaids: 6603701625 6603701625
[2025-04-17 12:20:05] 2025-04-17 16:20:03,454 [wrapper] cleanup supervisor_pilot 26781 30786
[2025-04-17 12:20:05] 2025-04-17 16:20:03,489 [wrapper] Test setup, not cleaning
[2025-04-17 12:20:05] 2025-04-17 16:20:03,532 [wrapper] apfmon messages muted
[2025-04-17 12:20:05] 2025-04-17 16:20:03,575 [wrapper] ==== wrapper stdout END ====
[2025-04-17 12:20:05] 2025-04-17 16:20:03,643 [wrapper] ==== wrapper stderr END ====
[2025-04-17 12:20:05]  *** Error codes and diagnostics ***
[2025-04-17 12:20:05]     "exeErrorCode": 0,
[2025-04-17 12:20:05]     "exeErrorDiag": "",
[2025-04-17 12:20:05]     "pilotErrorCode": 0,
[2025-04-17 12:20:05]     "pilotErrorDiag": "",
[2025-04-17 12:20:05]  *** Listing of results directory ***
[2025-04-17 12:20:05] total 640584
[2025-04-17 12:20:05] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-04-17 12:20:05] -rw-r--r-- 1 boincer umatlas    495897 Apr 16 02:08 pilot3.tar.gz
[2025-04-17 12:20:05] -rw-r--r-- 1 boincer umatlas      5111 Apr 16 02:14 queuedata.json
[2025-04-17 12:20:05] -rwx------ 1 boincer umatlas     37140 Apr 16 02:17 runpilot2-wrapper.sh
[2025-04-17 12:20:05] -rw-r--r-- 1 boincer umatlas       100 Apr 16 05:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-17 12:20:05] -rwxr-xr-x 1 boincer umatlas      7986 Apr 16 05:18 run_atlas
[2025-04-17 12:20:05] -rw-r--r-- 1 boincer umatlas       105 Apr 16 05:18 job.xml
[2025-04-17 12:20:05] -rw-r--r-- 3 boincer umatlas 223933644 Apr 16 05:18 EVNT.44075481._001445.pool.root.1
[2025-04-17 12:20:05] -rw-r--r-- 3 boincer umatlas 223933644 Apr 16 05:18 ATLAS.root_0
[2025-04-17 12:20:05] -rw-r--r-- 2 boincer umatlas     17569 Apr 16 05:18 start_atlas.sh
[2025-04-17 12:20:05] drwxrwx--x 2 boincer umatlas      4096 Apr 16 05:18 shared
[2025-04-17 12:20:05] -rw-r--r-- 2 boincer umatlas    508897 Apr 16 05:18 input.tar.gz
[2025-04-17 12:20:05] -rw-r--r-- 1 boincer umatlas         0 Apr 16 05:18 boinc_lockfile
[2025-04-17 12:20:05] -rw-r--r-- 1 boincer umatlas      2578 Apr 16 15:14 pandaJob.out
[2025-04-17 12:20:05] -rw------- 1 boincer umatlas       467 Apr 16 15:14 setup.sh.local
[2025-04-17 12:20:05] -rw------- 1 boincer umatlas    986568 Apr 16 15:15 agis_schedconf.cvmfs.json
[2025-04-17 12:20:05] -rw-r--r-- 1 boincer umatlas      6229 Apr 17 12:13 init_data.xml
[2025-04-17 12:20:05] -rw------- 1 boincer umatlas 192619221 Apr 17 12:16 HITS.44075483._036779.pool.root.1
[2025-04-17 12:20:05] -rw-r--r-- 1 boincer umatlas       533 Apr 17 12:16 boinc_task_state.xml
[2025-04-17 12:20:05] -rw------- 1 boincer umatlas      1057 Apr 17 12:18 memory_monitor_summary.json
[2025-04-17 12:20:05] -rw------- 1 boincer umatlas   1618536 Apr 17 12:18 agis_ddmendpoints.agis.ALL.json
[2025-04-17 12:20:05] -rw------- 1 boincer umatlas    874823 Apr 17 12:18 log.44075483._036779.job.log.tgz.1
[2025-04-17 12:20:05] -rw------- 1 boincer umatlas        96 Apr 17 12:19 pilot_heartbeat.json
[2025-04-17 12:20:05] -rw------- 1 boincer umatlas      7754 Apr 17 12:19 heartbeat.json
[2025-04-17 12:20:05] -rw------- 1 boincer umatlas      4932 Apr 17 12:20 pilotlog.txt
[2025-04-17 12:20:05] -rw-r--r-- 1 boincer umatlas      8192 Apr 17 12:20 boinc_mmap_file
[2025-04-17 12:20:05] -rw-r--r-- 1 boincer umatlas        30 Apr 17 12:20 wrapper_checkpoint.txt
[2025-04-17 12:20:05] -rw------- 1 boincer umatlas   4930374 Apr 17 12:20 log.44075483._036779.job.log.1
[2025-04-17 12:20:05] -rw------- 1 boincer umatlas       357 Apr 17 12:20 output.list
[2025-04-17 12:20:05] -rw-r--r-- 1 boincer umatlas       620 Apr 17 12:20 runtime_log
[2025-04-17 12:20:05] -rw------- 1 boincer umatlas   5826560 Apr 17 12:20 result.tar.gz
[2025-04-17 12:20:05] -rw-r--r-- 1 boincer umatlas     11501 Apr 17 12:20 runtime_log.err
[2025-04-17 12:20:05] -rw------- 1 boincer umatlas       788 Apr 17 12:20 JTYKDmGGBP7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmVE2KDmwiii9m.diag
[2025-04-17 12:20:05] -rw-r--r-- 1 boincer umatlas     16679 Apr 17 12:20 stderr.txt
[2025-04-17 12:20:05] HITS file was successfully produced:
[2025-04-17 12:20:05] -rw------- 1 boincer umatlas 192619221 Apr 17 12:16 shared/HITS.pool.root.1
[2025-04-17 12:20:05]  *** Contents of shared directory: ***
[2025-04-17 12:20:05] total 413012
[2025-04-17 12:20:05] -rw-r--r-- 3 boincer umatlas 223933644 Apr 16 05:18 ATLAS.root_0
[2025-04-17 12:20:05] -rw-r--r-- 2 boincer umatlas     17569 Apr 16 05:18 start_atlas.sh
[2025-04-17 12:20:05] -rw-r--r-- 2 boincer umatlas    508897 Apr 16 05:18 input.tar.gz
[2025-04-17 12:20:05] -rw------- 1 boincer umatlas 192619221 Apr 17 12:16 HITS.pool.root.1
[2025-04-17 12:20:05] -rw------- 1 boincer umatlas   5826560 Apr 17 12:20 result.tar.gz
12:20:07 (10040): run_atlas exited; CPU time 61575.688436
12:20:07 (10040): called boinc_finish(0)

</stderr_txt>
]]>

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