Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:05:58 (38527): wrapper (7.7.26015): starting
05:05:58 (38527): wrapper: running run_atlas (--nthreads 8)
[2025-04-16 05:05:58] Arguments: --nthreads 8
[2025-04-16 05:05:58] Threads: 8
[2025-04-16 05:05:58] Checking for CVMFS
[2025-04-16 05:05:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-16 05:05:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-16 05:05:59] Running cvmfs_config stat atlas.cern.ch
[2025-04-16 05:05:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-16 05:05:59] 2.11.2.0 276893 7745 156504 144919 3 376 9246768 18432001 25052 130560 0 33368685 98.516 91412527 40025 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-16 05:05:59] CVMFS is ok
[2025-04-16 05:05:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-16 05:05:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-16 05:05:59] Further information can be found at the LHC@home message board.
[2025-04-16 05:05:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-16 05:05:59] Checking for apptainer binary...
[2025-04-16 05:05:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-16 05:05:59] Running /usr/bin/apptainer --version
[2025-04-16 05:05:59] apptainer version 1.3.2-1.el7
[2025-04-16 05:05:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-16 05:06:02] c-211-33-3.aglt2.org
[2025-04-16 05:06:02] apptainer works
[2025-04-16 05:06:02] Set ATHENA_PROC_NUMBER=8
[2025-04-16 05:06:02] Set ATHENA_CORE_NUMBER=8
[2025-04-16 05:06:02] Starting ATLAS job with PandaID=6603701543
[2025-04-16 05:06:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-16 11:06:50]  *** The last 200 lines of the pilot log: ***
[2025-04-16 11:06:50] 2025-04-16 15:06:29,280 | INFO     | -- intersect: -25293342730.358894
[2025-04-16 11:06:50] 2025-04-16 15:06:29,280 | INFO     | intersect: -25293342730.358894
[2025-04-16 11:06:50] 2025-04-16 15:06:29,282 | INFO     | chi2: 7.4807688335188045
[2025-04-16 11:06:50] 2025-04-16 15:06:29,287 | INFO     | sum of square deviations: 12844311144.00284
[2025-04-16 11:06:50] 2025-04-16 15:06:29,296 | INFO     | sum of deviations: 238102031670.5259
[2025-04-16 11:06:50] 2025-04-16 15:06:29,297 | INFO     | mean x: 1744805051.7312138
[2025-04-16 11:06:50] 2025-04-16 15:06:29,298 | INFO     | mean y: 2435514.0809248555
[2025-04-16 11:06:50] 2025-04-16 15:06:29,298 | INFO     | -- intersect: -32341971517.83481
[2025-04-16 11:06:50] 2025-04-16 15:06:29,299 | INFO     | intersect: -32341971517.83481
[2025-04-16 11:06:50] 2025-04-16 15:06:29,300 | INFO     | chi2: 5.9305985041759195
[2025-04-16 11:06:50] 2025-04-16 15:06:29,302 | INFO     | current chi2=5.9305985041759195 (change=20.72207234097509 %)
[2025-04-16 11:06:50] 2025-04-16 15:06:29,302 | INFO     | right removable region: 345
[2025-04-16 11:06:50] 2025-04-16 15:06:29,304 | INFO     | sum of square deviations: 12844283023.537537
[2025-04-16 11:06:50] 2025-04-16 15:06:29,313 | INFO     | sum of deviations: 96704127776.02307
[2025-04-16 11:06:50] 2025-04-16 15:06:29,314 | INFO     | mean x: 1744805356.7341042
[2025-04-16 11:06:50] 2025-04-16 15:06:29,314 | INFO     | mean y: 2450162.9132947978
[2025-04-16 11:06:50] 2025-04-16 15:06:29,315 | INFO     | -- intersect: -13134124284.46549
[2025-04-16 11:06:50] 2025-04-16 15:06:29,315 | INFO     | intersect: -13134124284.46549
[2025-04-16 11:06:50] 2025-04-16 15:06:29,317 | INFO     | chi2: 4.370476087604883
[2025-04-16 11:06:50] 2025-04-16 15:06:29,317 | INFO     | current chi2=4.370476087604883 (change=41.577180302347365 %)
[2025-04-16 11:06:50] 2025-04-16 15:06:29,318 | INFO     | sum of square deviations: 12295438725.759583
[2025-04-16 11:06:50] 2025-04-16 15:06:29,328 | INFO     | sum of deviations: 24463706894.04984
[2025-04-16 11:06:50] 2025-04-16 15:06:29,330 | INFO     | mean x: 1744805509.2375367
[2025-04-16 11:06:50] 2025-04-16 15:06:29,331 | INFO     | mean y: 2470234.0117302053
[2025-04-16 11:06:50] 2025-04-16 15:06:29,331 | INFO     | -- intersect: -3469094426.4411263
[2025-04-16 11:06:50] 2025-04-16 15:06:29,332 | INFO     | intersect: -3469094426.4411263
[2025-04-16 11:06:50] 2025-04-16 15:06:29,333 | INFO     | chi2: 2.784587564916332
[2025-04-16 11:06:50] 2025-04-16 15:06:29,334 | INFO     | current chi2=2.784587564916332 (change=36.28640200517955 %)
[2025-04-16 11:06:50] 2025-04-16 15:06:29,335 | INFO     | sum of square deviations: 11762455190.47322
[2025-04-16 11:06:50] 2025-04-16 15:06:29,345 | INFO     | sum of deviations: -32521945080.66964
[2025-04-16 11:06:50] 2025-04-16 15:06:29,346 | INFO     | mean x: 1744805661.7410715
[2025-04-16 11:06:50] 2025-04-16 15:06:29,347 | INFO     | mean y: 2486498.026785714
[2025-04-16 11:06:50] 2025-04-16 15:06:29,347 | INFO     | -- intersect: 4826689692.742774
[2025-04-16 11:06:50] 2025-04-16 15:06:29,348 | INFO     | intersect: 4826689692.742774
[2025-04-16 11:06:50] 2025-04-16 15:06:29,349 | INFO     | chi2: 1.682762703808054
[2025-04-16 11:06:50] 2025-04-16 15:06:29,350 | INFO     | current chi2=1.682762703808054 (change=39.56869142814636 %)
[2025-04-16 11:06:50] 2025-04-16 15:06:29,351 | INFO     | sum of square deviations: 11245099855.1782
[2025-04-16 11:06:50] 2025-04-16 15:06:29,359 | INFO     | sum of deviations: -43855307409.60724
[2025-04-16 11:06:50] 2025-04-16 15:06:29,360 | INFO     | mean x: 1744805814.244713
[2025-04-16 11:06:50] 2025-04-16 15:06:29,361 | INFO     | mean y: 2489824.081570997
[2025-04-16 11:06:50] 2025-04-16 15:06:29,361 | INFO     | -- intersect: 6807142191.71138
[2025-04-16 11:06:50] 2025-04-16 15:06:29,361 | INFO     | intersect: 6807142191.71138
[2025-04-16 11:06:50] 2025-04-16 15:06:29,363 | INFO     | chi2: 1.6261910587959427
[2025-04-16 11:06:50] 2025-04-16 15:06:29,364 | INFO     | current chi2=1.6261910587959427 (change=3.361831402852634 %)
[2025-04-16 11:06:50] 2025-04-16 15:06:29,366 | INFO     | left removable region: 40
[2025-04-16 11:06:50] 2025-04-16 15:06:29,368 | INFO     | sum of square deviations: 8797880379.560722
[2025-04-16 11:06:50] 2025-04-16 15:06:29,377 | INFO     | sum of deviations: -2711949622.078687
[2025-04-16 11:06:50] 2025-04-16 15:06:29,377 | INFO     | mean x: 1744806241.252459
[2025-04-16 11:06:50] 2025-04-16 15:06:29,378 | INFO     | mean y: 2504327.104918033
[2025-04-16 11:06:50] 2025-04-16 15:06:29,380 | INFO     | -- intersect: 540341444.9586847
[2025-04-16 11:06:50] 2025-04-16 15:06:29,380 | INFO     | intersect: 540341444.9586847
[2025-04-16 11:06:50] 2025-04-16 15:06:29,381 | INFO     | chi2: 0.0020868093465997097
[2025-04-16 11:06:50] 2025-04-16 15:06:29,382 | INFO     | -- intersect: 540341444.9586847
[2025-04-16 11:06:50] 2025-04-16 15:06:29,383 | INFO     | current memory leak: -0.31 B/s (using 305 data points, chi2=0.00)
[2025-04-16 11:06:50] 2025-04-16 15:06:29,386 | INFO     | ..............................
[2025-04-16 11:06:50] 2025-04-16 15:06:29,387 | INFO     | . Timing measurements:
[2025-04-16 11:06:50] 2025-04-16 15:06:29,388 | INFO     | . get job = 0 s
[2025-04-16 11:06:50] 2025-04-16 15:06:29,389 | INFO     | . initial setup = 3 s
[2025-04-16 11:06:50] 2025-04-16 15:06:29,389 | INFO     | . payload setup = 39 s
[2025-04-16 11:06:50] 2025-04-16 15:06:29,389 | INFO     | . stage-in = 0 s
[2025-04-16 11:06:50] 2025-04-16 15:06:29,390 | INFO     | . payload execution = 21406 s
[2025-04-16 11:06:50] 2025-04-16 15:06:29,390 | INFO     | . stage-out = 10 s
[2025-04-16 11:06:50] 2025-04-16 15:06:29,390 | INFO     | . log creation = 4 s
[2025-04-16 11:06:50] 2025-04-16 15:06:29,391 | INFO     | ..............................
[2025-04-16 11:06:50] 2025-04-16 15:06:29,733 | INFO     | 
[2025-04-16 11:06:50] 2025-04-16 15:06:29,734 | INFO     | job summary report
[2025-04-16 11:06:50] 2025-04-16 15:06:29,734 | INFO     | --------------------------------------------------
[2025-04-16 11:06:50] 2025-04-16 15:06:29,735 | INFO     | PanDA job id: 6603701543
[2025-04-16 11:06:50] 2025-04-16 15:06:29,735 | INFO     | task id: 44075483
[2025-04-16 11:06:50] 2025-04-16 15:06:29,735 | INFO     | errors: (none)
[2025-04-16 11:06:50] 2025-04-16 15:06:29,736 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-16 11:06:50] 2025-04-16 15:06:29,736 | INFO     | pilot state: finished 
[2025-04-16 11:06:50] 2025-04-16 15:06:29,736 | INFO     | transexitcode: 0
[2025-04-16 11:06:50] 2025-04-16 15:06:29,737 | INFO     | exeerrorcode: 0
[2025-04-16 11:06:50] 2025-04-16 15:06:29,737 | INFO     | exeerrordiag: 
[2025-04-16 11:06:50] 2025-04-16 15:06:29,737 | INFO     | exitcode: 0
[2025-04-16 11:06:50] 2025-04-16 15:06:29,738 | INFO     | exitmsg: OK
[2025-04-16 11:06:50] 2025-04-16 15:06:29,738 | INFO     | cpuconsumptiontime: 45709 s
[2025-04-16 11:06:50] 2025-04-16 15:06:29,738 | INFO     | nevents: 400
[2025-04-16 11:06:50] 2025-04-16 15:06:29,739 | INFO     | neventsw: 0
[2025-04-16 11:06:50] 2025-04-16 15:06:29,739 | INFO     | pid: 75596
[2025-04-16 11:06:50] 2025-04-16 15:06:29,739 | INFO     | pgrp: 75596
[2025-04-16 11:06:50] 2025-04-16 15:06:29,740 | INFO     | corecount: 8
[2025-04-16 11:06:50] 2025-04-16 15:06:29,740 | INFO     | event service: False
[2025-04-16 11:06:50] 2025-04-16 15:06:29,740 | INFO     | sizes: {0: 2417360, 11: 2417360, 22: 2417388, 26: 2417622, 32: 2417650, 21450: 2450757, 21451: 2450884, 21463: 2459881, 21465: 2459937, 21535: 2460107}
[2025-04-16 11:06:50] 2025-04-16 15:06:29,743 | INFO     | --------------------------------------------------
[2025-04-16 11:06:50] 2025-04-16 15:06:29,743 | INFO     | 
[2025-04-16 11:06:50] 2025-04-16 15:06:29,744 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-04-16 11:06:50] 2025-04-16 15:06:29,947 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-16 11:06:50] 2025-04-16 15:06:29,947 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-16 11:06:50] 2025-04-16 15:06:29,947 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-16 11:06:50] 2025-04-16 15:06:29,947 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-16 11:06:50] 2025-04-16 15:06:29,947 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-16 11:06:50] 2025-04-16 15:06:29,947 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-16 11:06:50] 2025-04-16 15:06:29,947 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-16 11:06:50] 2025-04-16 15:06:29,947 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-16 11:06:50] 2025-04-16 15:06:29,947 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-16 11:06:50] 2025-04-16 15:06:29,948 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-16 11:06:50] 2025-04-16 15:06:29,948 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-16 11:06:50] 2025-04-16 15:06:29,948 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-16 11:06:50] 2025-04-16 15:06:29,948 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-16 11:06:50] 2025-04-16 15:06:29,948 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-16 11:06:50] 2025-04-16 15:06:29,948 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-16 11:06:50] 2025-04-16 15:06:29,948 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-16 11:06:50] 2025-04-16 15:06:29,948 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-16 11:06:50] 2025-04-16 15:06:29,948 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-16 11:06:50] 2025-04-16 15:06:29,948 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-16 11:06:50] 2025-04-16 15:06:29,949 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-16 11:06:50] 2025-04-16 15:06:29,949 | INFO     | job 6603701543 has completed (purged errors)
[2025-04-16 11:06:50] 2025-04-16 15:06:29,949 | INFO     | overall cleanup function is called
[2025-04-16 11:06:50] 2025-04-16 15:06:30,960 | INFO     | --- collectZombieJob: --- 10, [75596]
[2025-04-16 11:06:50] 2025-04-16 15:06:30,960 | INFO     | zombie collector waiting for pid 75596
[2025-04-16 11:06:50] 2025-04-16 15:06:30,960 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-16 11:06:50] 2025-04-16 15:06:30,960 | INFO     | collected zombie processes
[2025-04-16 11:06:50] 2025-04-16 15:06:30,960 | INFO     | will attempt to kill all subprocesses of pid=75596
[2025-04-16 11:06:50] 2025-04-16 15:06:31,553 | INFO     | PID=56917 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-04-16 11:06:50] 2025-04-16 15:06:31,554 | INFO     | .. there are 37 such processes running
[2025-04-16 11:06:50] 2025-04-16 15:06:32,071 | INFO     | process IDs to be killed: [75596] (in reverse order)
[2025-04-16 11:06:50] 2025-04-16 15:06:33,518 | WARNING  | found no corresponding commands to process id(s)
[2025-04-16 11:06:50] 2025-04-16 15:06:33,518 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-16 11:06:50] 2025-04-16 15:06:33,579 | INFO     | did not find any defunct processes belonging to 75596
[2025-04-16 11:06:50] 2025-04-16 15:06:33,635 | INFO     | did not find any defunct processes belonging to 75596
[2025-04-16 11:06:50] 2025-04-16 15:06:33,635 | INFO     | ready for new job
[2025-04-16 11:06:50] 2025-04-16 15:06:33,636 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-16 11:06:50] 2025-04-16 15:06:33,642 | INFO     | **************************************
[2025-04-16 11:06:50] 2025-04-16 15:06:33,642 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-16 11:06:50] 2025-04-16 15:06:33,642 | INFO     | **************************************
[2025-04-16 11:06:50] 2025-04-16 15:06:33,642 | INFO     | 
[2025-04-16 11:06:50] 2025-04-16 15:06:33,656 | INFO     | architecture information:
[2025-04-16 11:06:50] 2025-04-16 15:06:33,668 | INFO     | executing command: cat /etc/os-release
[2025-04-16 11:06:50] 2025-04-16 15:06:33,839 | INFO     | cat /etc/os-release:
[2025-04-16 11:06:50] NAME="CentOS Linux"
[2025-04-16 11:06:50] VERSION="7 (Core)"
[2025-04-16 11:06:50] ID="centos"
[2025-04-16 11:06:50] ID_LIKE="rhel fedora"
[2025-04-16 11:06:50] VERSION_ID="7"
[2025-04-16 11:06:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-16 11:06:50] ANSI_COLOR="0;31"
[2025-04-16 11:06:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-16 11:06:50] HOME_URL="https://www.centos.org/"
[2025-04-16 11:06:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-16 11:06:50] 
[2025-04-16 11:06:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-16 11:06:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-16 11:06:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-16 11:06:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-16 11:06:50] 
[2025-04-16 11:06:50] 2025-04-16 15:06:33,840 | INFO     | **************************************
[2025-04-16 11:06:50] 2025-04-16 15:06:34,343 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-04-16 11:06:50] 2025-04-16 15:06:34,479 | INFO     | sufficient remaining disk space (103173586944 B)
[2025-04-16 11:06:50] 2025-04-16 15:06:34,479 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-16 11:06:50] 2025-04-16 15:06:34,480 | INFO     | current server update state: UPDATING_FINAL
[2025-04-16 11:06:50] 2025-04-16 15:06:34,480 | INFO     | update_server=False
[2025-04-16 11:06:50] 2025-04-16 15:06:34,480 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-16 11:06:50] 2025-04-16 15:06:34,480 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-16 11:06:50] 2025-04-16 15:06:34,481 | INFO     | found 0 job(s) in 20 queues
[2025-04-16 11:06:50] 2025-04-16 15:06:34,481 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-16 11:06:50] 2025-04-16 15:06:34,481 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-16 11:06:50] 2025-04-16 15:06:34,481 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-16 11:06:50] 2025-04-16 15:06:34,481 | INFO     | aborting loop
[2025-04-16 11:06:50] 2025-04-16 15:06:34,506 | INFO     | all job control threads have been joined
[2025-04-16 11:06:50] 2025-04-16 15:06:34,708 | INFO     | all data control threads have been joined
[2025-04-16 11:06:50] 2025-04-16 15:06:34,746 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-16 11:06:50] 2025-04-16 15:06:35,123 | INFO     | all payload control threads have been joined
[2025-04-16 11:06:50] 2025-04-16 15:06:35,485 | INFO     | [job] retrieve thread has finished
[2025-04-16 11:06:50] 2025-04-16 15:06:35,489 | INFO     | [job] job monitor thread has finished
[2025-04-16 11:06:50] 2025-04-16 15:06:35,512 | INFO     | [job] control thread has finished
[2025-04-16 11:06:50] 2025-04-16 15:06:35,715 | INFO     | [job] create_data_payload thread has finished
[2025-04-16 11:06:50] 2025-04-16 15:06:35,723 | INFO     | [data] control thread has finished
[2025-04-16 11:06:50] 2025-04-16 15:06:35,752 | INFO     | [job] queue monitor thread has finished
[2025-04-16 11:06:50] 2025-04-16 15:06:35,762 | INFO     | [payload] execute_payloads thread has finished
[2025-04-16 11:06:50] 2025-04-16 15:06:35,765 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-16 11:06:50] 2025-04-16 15:06:35,767 | INFO     | [data] copytool_in thread has finished
[2025-04-16 11:06:50] 2025-04-16 15:06:35,876 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-16 11:06:50] 2025-04-16 15:06:36,129 | INFO     | [payload] control thread has finished
[2025-04-16 11:06:50] 2025-04-16 15:06:36,200 | INFO     | [payload] validate_pre thread has finished
[2025-04-16 11:06:50] 2025-04-16 15:06:36,208 | INFO     | [job] validate thread has finished
[2025-04-16 11:06:50] 2025-04-16 15:06:36,392 | INFO     | [payload] validate_post thread has finished
[2025-04-16 11:06:50] 2025-04-16 15:06:36,847 | INFO     | [payload] failed_post thread has finished
[2025-04-16 11:06:50] 2025-04-16 15:06:37,883 | INFO     | [data] copytool_out thread has finished
[2025-04-16 11:06:50] 2025-04-16 15:06:37,969 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-16 11:06:50] 2025-04-16 15:06:40,067 [wrapper] supervise_pilot (15 min periods counter: 25)
[2025-04-16 11:06:50] 2025-04-16 15:06:41,980 | INFO     | [data] queue_monitor thread has finished
[2025-04-16 11:06:50] 2025-04-16 15:06:42,358 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140651555194688)>', '<ExcThread(monitor, started 140650976634624)>']
[2025-04-16 11:06:50] 2025-04-16 15:06:42,559 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-16 11:06:50] 2025-04-16 15:06:42,559 | INFO     | [monitor] control thread has ended
[2025-04-16 11:06:50] 2025-04-16 15:06:47,387 | INFO     | all workflow threads have been joined
[2025-04-16 11:06:50] 2025-04-16 15:06:47,392 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-16 11:06:50] 2025-04-16 15:06:47,397 | INFO     | traces error code: 0
[2025-04-16 11:06:50] 2025-04-16 15:06:47,401 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-16 11:06:50] 2025-04-16 15:06:48,331 [wrapper] ==== pilot stdout END ====
[2025-04-16 11:06:50] 2025-04-16 15:06:48,372 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-16 11:06:50] 2025-04-16 15:06:48,426 [wrapper] pilotpid: 56917
[2025-04-16 11:06:50] 2025-04-16 15:06:48,485 [wrapper] Pilot exit status: 0
[2025-04-16 11:06:50] 2025-04-16 15:06:48,693 [wrapper] pandaids: 6603701543
[2025-04-16 11:06:50] 2025-04-16 15:06:49,408 [wrapper] cleanup supervisor_pilot  84426 56918
[2025-04-16 11:06:50] 2025-04-16 15:06:49,467 [wrapper] Test setup, not cleaning
[2025-04-16 11:06:50] 2025-04-16 15:06:49,511 [wrapper] apfmon messages muted
[2025-04-16 11:06:50] 2025-04-16 15:06:49,536 [wrapper] ==== wrapper stdout END ====
[2025-04-16 11:06:50] 2025-04-16 15:06:49,573 [wrapper] ==== wrapper stderr END ====
[2025-04-16 11:06:50]  *** Error codes and diagnostics ***
[2025-04-16 11:06:50]     "exeErrorCode": 0,
[2025-04-16 11:06:50]     "exeErrorDiag": "",
[2025-04-16 11:06:50]     "pilotErrorCode": 0,
[2025-04-16 11:06:50]     "pilotErrorDiag": "",
[2025-04-16 11:06:50]  *** Listing of results directory ***
[2025-04-16 11:06:50] total 410692
[2025-04-16 11:06:50] -rw-r--r-- 1 boincer umatlas    495897 Apr 16 02:02 pilot3.tar.gz
[2025-04-16 11:06:50] -rw-r--r-- 1 boincer umatlas      5111 Apr 16 02:04 queuedata.json
[2025-04-16 11:06:50] -rwx------ 1 boincer umatlas     37140 Apr 16 02:05 runpilot2-wrapper.sh
[2025-04-16 11:06:50] -rw-r--r-- 1 boincer umatlas       100 Apr 16 05:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-16 11:06:50] -rwxr-xr-x 1 boincer umatlas      7986 Apr 16 05:05 run_atlas
[2025-04-16 11:06:50] -rw-r--r-- 1 boincer umatlas       105 Apr 16 05:05 job.xml
[2025-04-16 11:06:50] -rw-r--r-- 2 boincer umatlas 220552111 Apr 16 05:05 EVNT.44075481._001442.pool.root.1
[2025-04-16 11:06:50] -rw-r--r-- 2 boincer umatlas     17569 Apr 16 05:05 start_atlas.sh
[2025-04-16 11:06:50] drwxrwx--x 2 boincer umatlas      4096 Apr 16 05:05 shared
[2025-04-16 11:06:50] -rw-r--r-- 2 boincer umatlas    508891 Apr 16 05:05 input.tar.gz
[2025-04-16 11:06:50] -rw-r--r-- 1 boincer umatlas         0 Apr 16 05:05 boinc_lockfile
[2025-04-16 11:06:50] -rw-r--r-- 1 boincer umatlas      2576 Apr 16 05:06 pandaJob.out
[2025-04-16 11:06:50] -rw------- 1 boincer umatlas       424 Apr 16 05:06 setup.sh.local
[2025-04-16 11:06:50] -rw------- 1 boincer umatlas    985396 Apr 16 05:06 agis_schedconf.cvmfs.json
[2025-04-16 11:06:50] drwx------ 4 boincer umatlas      4096 Apr 16 05:06 pilot3
[2025-04-16 11:06:50] -rw------- 1 boincer umatlas 191933446 Apr 16 11:02 HITS.44075483._036697.pool.root.1
[2025-04-16 11:06:50] -rw-r--r-- 1 boincer umatlas       531 Apr 16 11:02 boinc_task_state.xml
[2025-04-16 11:06:50] -rw-r--r-- 1 boincer umatlas      6301 Apr 16 11:03 init_data.xml
[2025-04-16 11:06:50] -rw------- 1 boincer umatlas      1064 Apr 16 11:05 memory_monitor_summary.json
[2025-04-16 11:06:50] -rw------- 1 boincer umatlas   1603529 Apr 16 11:05 agis_ddmendpoints.agis.ALL.json
[2025-04-16 11:06:50] -rw------- 1 boincer umatlas    436555 Apr 16 11:05 log.44075483._036697.job.log.tgz.1
[2025-04-16 11:06:50] -rw------- 1 boincer umatlas        95 Apr 16 11:06 pilot_heartbeat.json
[2025-04-16 11:06:50] -rw------- 1 boincer umatlas      7759 Apr 16 11:06 heartbeat.json
[2025-04-16 11:06:50] -rw-r--r-- 1 boincer umatlas      8192 Apr 16 11:06 boinc_mmap_file
[2025-04-16 11:06:50] -rw-r--r-- 1 boincer umatlas        28 Apr 16 11:06 wrapper_checkpoint.txt
[2025-04-16 11:06:50] -rw------- 1 boincer umatlas      4477 Apr 16 11:06 pilotlog.txt
[2025-04-16 11:06:50] -rw------- 1 boincer umatlas   1679273 Apr 16 11:06 log.44075483._036697.job.log.1
[2025-04-16 11:06:50] -rw------- 1 boincer umatlas       357 Apr 16 11:06 output.list
[2025-04-16 11:06:50] -rw-r--r-- 1 boincer umatlas       620 Apr 16 11:06 runtime_log
[2025-04-16 11:06:50] -rw------- 1 boincer umatlas   2129920 Apr 16 11:06 result.tar.gz
[2025-04-16 11:06:50] -rw-r--r-- 1 boincer umatlas     11024 Apr 16 11:06 runtime_log.err
[2025-04-16 11:06:50] -rw------- 1 boincer umatlas       664 Apr 16 11:06 mZPNDmL5AP7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmoD2KDmbNVHCn.diag
[2025-04-16 11:06:50] -rw-r--r-- 1 boincer umatlas     21000 Apr 16 11:06 stderr.txt
[2025-04-16 11:06:51] HITS file was successfully produced:
[2025-04-16 11:06:51] -rw------- 1 boincer umatlas 191933446 Apr 16 11:02 shared/HITS.pool.root.1
[2025-04-16 11:06:51]  *** Contents of shared directory: ***
[2025-04-16 11:06:51] total 405424
[2025-04-16 11:06:51] -rw-r--r-- 2 boincer umatlas 220552111 Apr 16 05:05 ATLAS.root_0
[2025-04-16 11:06:51] -rw-r--r-- 2 boincer umatlas     17569 Apr 16 05:05 start_atlas.sh
[2025-04-16 11:06:51] -rw-r--r-- 2 boincer umatlas    508891 Apr 16 05:05 input.tar.gz
[2025-04-16 11:06:51] -rw------- 1 boincer umatlas 191933446 Apr 16 11:02 HITS.pool.root.1
[2025-04-16 11:06:51] -rw------- 1 boincer umatlas   2129920 Apr 16 11:06 result.tar.gz
11:06:52 (38527): run_atlas exited; CPU time 46681.513727
11:06:52 (38527): called boinc_finish(0)

</stderr_txt>
]]>

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