Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:28:35 (1398): wrapper (7.7.26015): starting
03:28:35 (1398): wrapper: running run_atlas (--nthreads 10)
[2025-04-16 03:28:35] Arguments: --nthreads 10
[2025-04-16 03:28:35] Threads: 10
[2025-04-16 03:28:35] Checking for CVMFS
[2025-04-16 03:28:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-16 03:28:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-16 03:28:37] Running cvmfs_config stat atlas.cern.ch
[2025-04-16 03:28:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-16 03:28:39] 2.11.2.0 20863 23628 229820 144918 0 306 16642344 18432000 19026 130560 0 114832145 98.978 267740149 36676 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-04-16 03:28:39] CVMFS is ok
[2025-04-16 03:28:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-04-16 03:28:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-04-16 03:28:39] Further information can be found at the LHC@home message board.
[2025-04-16 03:28:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-16 03:28:39] Checking for apptainer binary...
[2025-04-16 03:28:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-16 03:28:39] Running /usr/bin/apptainer --version
[2025-04-16 03:28:39] apptainer version 1.3.2-1.el7
[2025-04-16 03:28:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-16 03:29:07] c-210-1.aglt2.org
[2025-04-16 03:29:07] apptainer works
[2025-04-16 03:29:07] Set ATHENA_PROC_NUMBER=10
[2025-04-16 03:29:07] Set ATHENA_CORE_NUMBER=10
[2025-04-16 03:29:07] Starting ATLAS job with PandaID=6603699936
[2025-04-16 03:29:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-16 15:36:21]  *** The last 200 lines of the pilot log: ***
[2025-04-16 15:36:21] 2025-04-16 19:35:58,700 | INFO     | chi2: 10.292174101170719
[2025-04-16 15:36:21] 2025-04-16 19:35:58,725 | INFO     | monitor loop #2128: job 0:6603699936 is in state 'finished'
[2025-04-16 15:36:21] 2025-04-16 19:35:58,726 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-16 15:36:21] 2025-04-16 19:35:58,727 | INFO     | current chi2=10.292174101170719 (change=7.20668160889453 %)
[2025-04-16 15:36:21] 2025-04-16 19:35:58,727 | INFO     | right removable region: 701
[2025-04-16 15:36:21] 2025-04-16 19:35:58,740 | INFO     | sum of square deviations: 107276852150.76366
[2025-04-16 15:36:21] 2025-04-16 19:35:58,865 | INFO     | sum of deviations: 564200650604.1334
[2025-04-16 15:36:21] 2025-04-16 19:35:58,865 | INFO     | mean x: 1744810674.3048432
[2025-04-16 15:36:21] 2025-04-16 19:35:58,866 | INFO     | mean y: 2535429.99002849
[2025-04-16 15:36:21] 2025-04-16 19:35:58,866 | INFO     | -- intersect: -9173939251.056265
[2025-04-16 15:36:21] 2025-04-16 19:35:58,866 | INFO     | intersect: -9173939251.056265
[2025-04-16 15:36:21] 2025-04-16 19:35:58,880 | INFO     | chi2: 6.535651185883558
[2025-04-16 15:36:21] 2025-04-16 19:35:58,880 | INFO     | current chi2=6.535651185883558 (change=41.075155217602216 %)
[2025-04-16 15:36:21] 2025-04-16 19:35:58,898 | INFO     | sum of square deviations: 105000813895.00159
[2025-04-16 15:36:21] 2025-04-16 19:35:58,915 | INFO     | sum of deviations: 381694343062.3096
[2025-04-16 15:36:21] 2025-04-16 19:35:58,916 | INFO     | mean x: 1744810826.810617
[2025-04-16 15:36:21] 2025-04-16 19:35:58,916 | INFO     | mean y: 2547655.093256815
[2025-04-16 15:36:21] 2025-04-16 19:35:58,916 | INFO     | -- intersect: -6340111964.416482
[2025-04-16 15:36:21] 2025-04-16 19:35:58,916 | INFO     | intersect: -6340111964.416482
[2025-04-16 15:36:21] 2025-04-16 19:35:58,920 | INFO     | chi2: 4.202854574646667
[2025-04-16 15:36:21] 2025-04-16 19:35:58,921 | INFO     | current chi2=4.202854574646667 (change=35.693407510418105 %)
[2025-04-16 15:36:21] 2025-04-16 19:35:58,923 | INFO     | sum of square deviations: 102757194851.69217
[2025-04-16 15:36:21] 2025-04-16 19:35:58,951 | INFO     | sum of deviations: 229051094707.81372
[2025-04-16 15:36:21] 2025-04-16 19:35:58,951 | INFO     | mean x: 1744810979.316474
[2025-04-16 15:36:21] 2025-04-16 19:35:58,951 | INFO     | mean y: 2558030.726878613
[2025-04-16 15:36:21] 2025-04-16 19:35:58,951 | INFO     | -- intersect: -3886715761.2198615
[2025-04-16 15:36:21] 2025-04-16 19:35:58,952 | INFO     | intersect: -3886715761.2198615
[2025-04-16 15:36:21] 2025-04-16 19:35:58,953 | INFO     | chi2: 2.609987253601826
[2025-04-16 15:36:21] 2025-04-16 19:35:58,953 | INFO     | current chi2=2.609987253601826 (change=37.89965350344659 %)
[2025-04-16 15:36:21] 2025-04-16 19:35:58,978 | INFO     | sum of square deviations: 100545762458.33383
[2025-04-16 15:36:21] 2025-04-16 19:35:59,037 | INFO     | sum of deviations: 93738043059.75122
[2025-04-16 15:36:21] 2025-04-16 19:35:59,038 | INFO     | mean x: 1744811131.8224163
[2025-04-16 15:36:21] 2025-04-16 19:35:59,038 | INFO     | mean y: 2567356.3668122273
[2025-04-16 15:36:21] 2025-04-16 19:35:59,038 | INFO     | -- intersect: -1624106677.4959295
[2025-04-16 15:36:21] 2025-04-16 19:35:59,038 | INFO     | intersect: -1624106677.4959295
[2025-04-16 15:36:21] 2025-04-16 19:35:59,039 | INFO     | chi2: 1.3075098724346914
[2025-04-16 15:36:21] 2025-04-16 19:35:59,072 | INFO     | current chi2=1.3075098724346914 (change=49.90359165048389 %)
[2025-04-16 15:36:21] 2025-04-16 19:35:59,085 | INFO     | sum of square deviations: 98366284152.4281
[2025-04-16 15:36:21] 2025-04-16 19:35:59,154 | INFO     | sum of deviations: 32294217966.10269
[2025-04-16 15:36:21] 2025-04-16 19:35:59,155 | INFO     | mean x: 1744811284.3284457
[2025-04-16 15:36:21] 2025-04-16 19:35:59,155 | INFO     | mean y: 2571652.030791789
[2025-04-16 15:36:21] 2025-04-16 19:35:59,199 | INFO     | -- intersect: -570259947.8546199
[2025-04-16 15:36:21] 2025-04-16 19:35:59,204 | INFO     | intersect: -570259947.8546199
[2025-04-16 15:36:21] 2025-04-16 19:35:59,206 | INFO     | chi2: 1.0429355650332783
[2025-04-16 15:36:21] 2025-04-16 19:35:59,206 | INFO     | current chi2=1.0429355650332783 (change=20.234975886549435 %)
[2025-04-16 15:36:21] 2025-04-16 19:35:59,216 | INFO     | left removable region: 50
[2025-04-16 15:36:21] 2025-04-16 19:35:59,218 | INFO     | sum of square deviations: 85553822760.07356
[2025-04-16 15:36:21] 2025-04-16 19:35:59,239 | INFO     | sum of deviations: -18615087115.705093
[2025-04-16 15:36:21] 2025-04-16 19:35:59,239 | INFO     | mean x: 1744811863.829493
[2025-04-16 15:36:21] 2025-04-16 19:35:59,247 | INFO     | mean y: 2582268.984639017
[2025-04-16 15:36:21] 2025-04-16 19:35:59,247 | INFO     | -- intersect: 382224274.42474586
[2025-04-16 15:36:21] 2025-04-16 19:35:59,247 | INFO     | intersect: 382224274.42474586
[2025-04-16 15:36:21] 2025-04-16 19:35:59,253 | INFO     | chi2: 0.019385812314684423
[2025-04-16 15:36:21] 2025-04-16 19:35:59,253 | INFO     | -- intersect: 382224274.42474586
[2025-04-16 15:36:21] 2025-04-16 19:35:59,253 | INFO     | current memory leak: -0.22 B/s (using 651 data points, chi2=0.02)
[2025-04-16 15:36:21] 2025-04-16 19:35:59,255 | INFO     | ..............................
[2025-04-16 15:36:21] 2025-04-16 19:35:59,255 | INFO     | . Timing measurements:
[2025-04-16 15:36:21] 2025-04-16 19:35:59,255 | INFO     | . get job = 0 s
[2025-04-16 15:36:21] 2025-04-16 19:35:59,255 | INFO     | . initial setup = 10 s
[2025-04-16 15:36:21] 2025-04-16 19:35:59,255 | INFO     | . payload setup = 84 s
[2025-04-16 15:36:21] 2025-04-16 19:35:59,270 | INFO     | . stage-in = 0 s
[2025-04-16 15:36:21] 2025-04-16 19:35:59,271 | INFO     | . payload execution = 43211 s
[2025-04-16 15:36:21] 2025-04-16 19:35:59,271 | INFO     | . stage-out = 5 s
[2025-04-16 15:36:21] 2025-04-16 19:35:59,271 | INFO     | . log creation = 1 s
[2025-04-16 15:36:21] 2025-04-16 19:35:59,271 | INFO     | ..............................
[2025-04-16 15:36:21] 2025-04-16 19:35:59,534 | INFO     | 
[2025-04-16 15:36:21] 2025-04-16 19:35:59,535 | INFO     | job summary report
[2025-04-16 15:36:21] 2025-04-16 19:35:59,535 | INFO     | --------------------------------------------------
[2025-04-16 15:36:21] 2025-04-16 19:35:59,535 | INFO     | PanDA job id: 6603699936
[2025-04-16 15:36:21] 2025-04-16 19:35:59,535 | INFO     | task id: 44075483
[2025-04-16 15:36:21] 2025-04-16 19:35:59,535 | INFO     | errors: (none)
[2025-04-16 15:36:21] 2025-04-16 19:35:59,535 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-16 15:36:21] 2025-04-16 19:35:59,535 | INFO     | pilot state: finished 
[2025-04-16 15:36:21] 2025-04-16 19:35:59,535 | INFO     | transexitcode: 0
[2025-04-16 15:36:21] 2025-04-16 19:35:59,535 | INFO     | exeerrorcode: 0
[2025-04-16 15:36:21] 2025-04-16 19:35:59,536 | INFO     | exeerrordiag: 
[2025-04-16 15:36:21] 2025-04-16 19:35:59,536 | INFO     | exitcode: 0
[2025-04-16 15:36:21] 2025-04-16 19:35:59,536 | INFO     | exitmsg: OK
[2025-04-16 15:36:21] 2025-04-16 19:35:59,536 | INFO     | cpuconsumptiontime: 54891 s
[2025-04-16 15:36:21] 2025-04-16 19:35:59,536 | INFO     | nevents: 400
[2025-04-16 15:36:21] 2025-04-16 19:35:59,539 | INFO     | neventsw: 0
[2025-04-16 15:36:21] 2025-04-16 19:35:59,539 | INFO     | pid: 39642
[2025-04-16 15:36:21] 2025-04-16 19:35:59,539 | INFO     | pgrp: 39642
[2025-04-16 15:36:21] 2025-04-16 19:35:59,539 | INFO     | corecount: 10
[2025-04-16 15:36:21] 2025-04-16 19:35:59,539 | INFO     | event service: False
[2025-04-16 15:36:21] 2025-04-16 19:35:59,539 | INFO     | sizes: {0: 2416538, 1: 2417223, 2: 2417422, 3: 2417422, 14: 2417450, 25: 2417478, 36: 2417634, 48: 2417662, 52: 2417896, 59: 2417924, 43299: 2460124, 43305: 246906
[2025-04-16 15:36:21] 2025-04-16 19:35:59,539 | INFO     | --------------------------------------------------
[2025-04-16 15:36:21] 2025-04-16 19:35:59,539 | INFO     | 
[2025-04-16 15:36:21] 2025-04-16 19:35:59,540 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-04-16 15:36:21] 2025-04-16 19:35:59,787 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-16 15:36:21] 2025-04-16 19:35:59,787 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-16 15:36:21] 2025-04-16 19:35:59,799 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-16 15:36:21] 2025-04-16 19:35:59,800 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-16 15:36:21] 2025-04-16 19:35:59,800 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-16 15:36:21] 2025-04-16 19:35:59,800 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-16 15:36:21] 2025-04-16 19:35:59,800 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-16 15:36:21] 2025-04-16 19:35:59,800 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-16 15:36:21] 2025-04-16 19:35:59,800 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-16 15:36:21] 2025-04-16 19:35:59,801 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-16 15:36:21] 2025-04-16 19:35:59,801 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-16 15:36:21] 2025-04-16 19:35:59,801 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-16 15:36:21] 2025-04-16 19:35:59,801 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-16 15:36:21] 2025-04-16 19:35:59,801 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-16 15:36:21] 2025-04-16 19:35:59,801 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-16 15:36:21] 2025-04-16 19:35:59,801 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-16 15:36:21] 2025-04-16 19:35:59,802 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-16 15:36:21] 2025-04-16 19:35:59,802 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-16 15:36:21] 2025-04-16 19:35:59,802 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-16 15:36:21] 2025-04-16 19:35:59,802 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-16 15:36:21] 2025-04-16 19:35:59,802 | INFO     | job 6603699936 has completed (purged errors)
[2025-04-16 15:36:21] 2025-04-16 19:35:59,802 | INFO     | overall cleanup function is called
[2025-04-16 15:36:21] 2025-04-16 19:36:00,846 | INFO     | --- collectZombieJob: --- 10, [39642]
[2025-04-16 15:36:21] 2025-04-16 19:36:00,846 | INFO     | zombie collector waiting for pid 39642
[2025-04-16 15:36:21] 2025-04-16 19:36:00,847 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-16 15:36:21] 2025-04-16 19:36:00,847 | INFO     | collected zombie processes
[2025-04-16 15:36:21] 2025-04-16 19:36:00,847 | INFO     | will attempt to kill all subprocesses of pid=39642
[2025-04-16 15:36:21] 2025-04-16 19:36:04,457 | INFO     | PID=35810 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-04-16 15:36:21] 2025-04-16 19:36:04,457 | INFO     | .. there are 42 such processes running
[2025-04-16 15:36:21] 2025-04-16 19:36:04,494 | INFO     | process IDs to be killed: [39642] (in reverse order)
[2025-04-16 15:36:21] 2025-04-16 19:36:05,683 | WARNING  | found no corresponding commands to process id(s)
[2025-04-16 15:36:21] 2025-04-16 19:36:05,684 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-16 15:36:21] 2025-04-16 19:36:05,701 | INFO     | did not find any defunct processes belonging to 39642
[2025-04-16 15:36:21] 2025-04-16 19:36:05,713 | INFO     | did not find any defunct processes belonging to 39642
[2025-04-16 15:36:21] 2025-04-16 19:36:05,714 | INFO     | ready for new job
[2025-04-16 15:36:21] 2025-04-16 19:36:05,714 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-16 15:36:21] 2025-04-16 19:36:05,718 | INFO     | **************************************
[2025-04-16 15:36:21] 2025-04-16 19:36:05,718 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-16 15:36:21] 2025-04-16 19:36:05,719 | INFO     | **************************************
[2025-04-16 15:36:21] 2025-04-16 19:36:05,719 | INFO     | 
[2025-04-16 15:36:21] 2025-04-16 19:36:05,723 | INFO     | architecture information:
[2025-04-16 15:36:21] 2025-04-16 19:36:05,723 | INFO     | executing command: cat /etc/os-release
[2025-04-16 15:36:21] 2025-04-16 19:36:05,929 | INFO     | cat /etc/os-release:
[2025-04-16 15:36:21] NAME="CentOS Linux"
[2025-04-16 15:36:21] VERSION="7 (Core)"
[2025-04-16 15:36:21] ID="centos"
[2025-04-16 15:36:21] ID_LIKE="rhel fedora"
[2025-04-16 15:36:21] VERSION_ID="7"
[2025-04-16 15:36:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-16 15:36:21] ANSI_COLOR="0;31"
[2025-04-16 15:36:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-16 15:36:21] HOME_URL="https://www.centos.org/"
[2025-04-16 15:36:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-16 15:36:21] 
[2025-04-16 15:36:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-16 15:36:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-16 15:36:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-16 15:36:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-16 15:36:21] 
[2025-04-16 15:36:21] 2025-04-16 19:36:05,929 | INFO     | **************************************
[2025-04-16 15:36:21] 2025-04-16 19:36:06,433 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-04-16 15:36:21] 2025-04-16 19:36:06,466 | INFO     | sufficient remaining disk space (56943968256 B)
[2025-04-16 15:36:21] 2025-04-16 19:36:06,467 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-16 15:36:21] 2025-04-16 19:36:06,467 | INFO     | current server update state: UPDATING_FINAL
[2025-04-16 15:36:21] 2025-04-16 19:36:06,467 | INFO     | update_server=False
[2025-04-16 15:36:21] 2025-04-16 19:36:06,467 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-16 15:36:21] 2025-04-16 19:36:06,468 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-04-16 15:36:21] 2025-04-16 19:36:06,468 | INFO     | found 0 job(s) in 20 queues
[2025-04-16 15:36:21] 2025-04-16 19:36:06,468 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-16 15:36:21] 2025-04-16 19:36:06,468 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-16 15:36:21] 2025-04-16 19:36:06,826 | INFO     | all data control threads have been joined
[2025-04-16 15:36:21] 2025-04-16 19:36:07,326 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-16 15:36:21] 2025-04-16 19:36:07,327 | INFO     | aborting loop
[2025-04-16 15:36:21] 2025-04-16 19:36:07,359 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-16 15:36:21] 2025-04-16 19:36:07,491 | INFO     | [job] retrieve thread has finished
[2025-04-16 15:36:21] 2025-04-16 19:36:07,781 | INFO     | [payload] validate_post thread has finished
[2025-04-16 15:36:21] 2025-04-16 19:36:07,790 | INFO     | all payload control threads have been joined
[2025-04-16 15:36:21] 2025-04-16 19:36:07,832 | INFO     | [data] control thread has finished
[2025-04-16 15:36:21] 2025-04-16 19:36:08,002 | INFO     | all job control threads have been joined
[2025-04-16 15:36:21] 2025-04-16 19:36:08,332 | INFO     | [job] job monitor thread has finished
[2025-04-16 15:36:21] 2025-04-16 19:36:08,588 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-16 15:36:21] 2025-04-16 19:36:08,683 | INFO     | [payload] failed_post thread has finished
[2025-04-16 15:36:21] 2025-04-16 19:36:08,797 | INFO     | [payload] control thread has finished
[2025-04-16 15:36:21] 2025-04-16 19:36:08,846 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-16 15:36:21] 2025-04-16 19:36:08,847 | INFO     | [job] create_data_payload thread has finished
[2025-04-16 15:36:21] 2025-04-16 19:36:08,847 | INFO     | [payload] validate_pre thread has finished
[2025-04-16 15:36:21] 2025-04-16 19:36:08,848 | INFO     | [data] copytool_in thread has finished
[2025-04-16 15:36:21] 2025-04-16 19:36:08,860 | INFO     | [job] validate thread has finished
[2025-04-16 15:36:21] 2025-04-16 19:36:08,929 | INFO     | [payload] execute_payloads thread has finished
[2025-04-16 15:36:21] 2025-04-16 19:36:08,994 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-16 15:36:21] 2025-04-16 19:36:09,007 | INFO     | [job] control thread has finished
[2025-04-16 15:36:21] 2025-04-16 19:36:09,366 | INFO     | [data] copytool_out thread has finished
[2025-04-16 15:36:21] 2025-04-16 19:36:09,593 | INFO     | [job] queue monitor thread has finished
[2025-04-16 15:36:21] 2025-04-16 19:36:13,003 | INFO     | [data] queue_monitor thread has finished
[2025-04-16 15:36:21] 2025-04-16 19:36:14,344 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139828844771136)>', '<ExcThread(monitor, started 139828406503168)>']
[2025-04-16 15:36:21] 2025-04-16 19:36:14,541 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-16 15:36:21] 2025-04-16 19:36:14,542 | INFO     | [monitor] control thread has ended
[2025-04-16 15:36:21] 2025-04-16 19:36:19,370 | INFO     | all workflow threads have been joined
[2025-04-16 15:36:21] 2025-04-16 19:36:19,371 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-16 15:36:21] 2025-04-16 19:36:19,371 | INFO     | traces error code: 0
[2025-04-16 15:36:21] 2025-04-16 19:36:19,371 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-16 15:36:21] 2025-04-16 19:36:19,769 [wrapper] ==== pilot stdout END ====
[2025-04-16 15:36:21] 2025-04-16 19:36:19,809 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-16 15:36:21] 2025-04-16 19:36:19,826 [wrapper] pilotpid: 35810
[2025-04-16 15:36:21] 2025-04-16 19:36:19,830 [wrapper] Pilot exit status: 0
[2025-04-16 15:36:21] 2025-04-16 19:36:19,921 [wrapper] pandaids: 6603699936
[2025-04-16 15:36:21] 2025-04-16 19:36:20,125 [wrapper] cleanup supervisor_pilot 32564 35812
[2025-04-16 15:36:21] 2025-04-16 19:36:20,130 [wrapper] Test setup, not cleaning
[2025-04-16 15:36:21] 2025-04-16 19:36:20,134 [wrapper] apfmon messages muted
[2025-04-16 15:36:21] 2025-04-16 19:36:20,179 [wrapper] ==== wrapper stdout END ====
[2025-04-16 15:36:21] 2025-04-16 19:36:20,199 [wrapper] ==== wrapper stderr END ====
[2025-04-16 15:36:21]  *** Error codes and diagnostics ***
[2025-04-16 15:36:21]     "exeErrorCode": 0,
[2025-04-16 15:36:21]     "exeErrorDiag": "",
[2025-04-16 15:36:21]     "pilotErrorCode": 0,
[2025-04-16 15:36:21]     "pilotErrorDiag": "",
[2025-04-16 15:36:21]  *** Listing of results directory ***
[2025-04-16 15:36:21] total 416044
[2025-04-16 15:36:21] -rw-r--r-- 1 boincer umatlas    495897 Apr 15 23:24 pilot3.tar.gz
[2025-04-16 15:36:21] -rwx------ 1 boincer umatlas     37140 Apr 15 23:49 runpilot2-wrapper.sh
[2025-04-16 15:36:21] -rw-r--r-- 1 boincer umatlas      5111 Apr 15 23:49 queuedata.json
[2025-04-16 15:36:21] -rw-r--r-- 1 boincer umatlas       100 Apr 16 03:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-16 15:36:21] -rwxr-xr-x 1 boincer umatlas      7986 Apr 16 03:28 run_atlas
[2025-04-16 15:36:21] -rw-r--r-- 1 boincer umatlas       105 Apr 16 03:28 job.xml
[2025-04-16 15:36:21] -rw-r--r-- 2 boincer umatlas 222589403 Apr 16 03:28 EVNT.44075481._001395.pool.root.1
[2025-04-16 15:36:21] -rw-r--r-- 2 boincer umatlas     17569 Apr 16 03:28 start_atlas.sh
[2025-04-16 15:36:21] drwxrwx--x 2 boincer umatlas      4096 Apr 16 03:28 shared
[2025-04-16 15:36:21] -rw-r--r-- 2 boincer umatlas    508892 Apr 16 03:28 input.tar.gz
[2025-04-16 15:36:21] -rw-r--r-- 1 boincer umatlas         0 Apr 16 03:28 boinc_lockfile
[2025-04-16 15:36:21] -rw-r--r-- 1 boincer umatlas      2579 Apr 16 03:29 pandaJob.out
[2025-04-16 15:36:21] -rw------- 1 boincer umatlas       467 Apr 16 03:29 setup.sh.local
[2025-04-16 15:36:21] -rw------- 1 boincer umatlas    985908 Apr 16 03:31 agis_schedconf.cvmfs.json
[2025-04-16 15:36:21] drwx------ 4 boincer umatlas      4096 Apr 16 03:31 pilot3
[2025-04-16 15:36:21] -rw-r--r-- 1 boincer umatlas      6227 Apr 16 15:30 init_data.xml
[2025-04-16 15:36:21] -rw------- 1 boincer umatlas 192223428 Apr 16 15:33 HITS.44075483._035531.pool.root.1
[2025-04-16 15:36:21] -rw-r--r-- 1 boincer umatlas       531 Apr 16 15:33 boinc_task_state.xml
[2025-04-16 15:36:21] -rw------- 1 boincer umatlas      1072 Apr 16 15:34 memory_monitor_summary.json
[2025-04-16 15:36:21] -rw------- 1 boincer umatlas   1603529 Apr 16 15:35 agis_ddmendpoints.agis.ALL.json
[2025-04-16 15:36:21] -rw------- 1 boincer umatlas    654736 Apr 16 15:35 log.44075483._035531.job.log.tgz.1
[2025-04-16 15:36:21] -rw------- 1 boincer umatlas        95 Apr 16 15:35 pilot_heartbeat.json
[2025-04-16 15:36:21] -rw------- 1 boincer umatlas      7754 Apr 16 15:35 heartbeat.json
[2025-04-16 15:36:21] -rw------- 1 boincer umatlas      4476 Apr 16 15:36 pilotlog.txt
[2025-04-16 15:36:21] -rw------- 1 boincer umatlas   3033764 Apr 16 15:36 log.44075483._035531.job.log.1
[2025-04-16 15:36:21] -rw------- 1 boincer umatlas       357 Apr 16 15:36 output.list
[2025-04-16 15:36:21] -rw-r--r-- 1 boincer umatlas       620 Apr 16 15:36 runtime_log
[2025-04-16 15:36:21] -rw------- 1 boincer umatlas   3706880 Apr 16 15:36 result.tar.gz
[2025-04-16 15:36:21] -rw-r--r-- 1 boincer umatlas        28 Apr 16 15:36 wrapper_checkpoint.txt
[2025-04-16 15:36:21] -rw-r--r-- 1 boincer umatlas      8192 Apr 16 15:36 boinc_mmap_file
[2025-04-16 15:36:21] -rw------- 1 boincer umatlas       662 Apr 16 15:36 XYiKDmRx8O7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmGVZLDmQlbGjm.diag
[2025-04-16 15:36:21] -rw-r--r-- 1 boincer umatlas     11416 Apr 16 15:36 runtime_log.err
[2025-04-16 15:36:21] -rw-r--r-- 1 boincer umatlas     21117 Apr 16 15:36 stderr.txt
[2025-04-16 15:36:21] HITS file was successfully produced:
[2025-04-16 15:36:21] -rw------- 1 boincer umatlas 192223428 Apr 16 15:33 shared/HITS.pool.root.1
[2025-04-16 15:36:21]  *** Contents of shared directory: ***
[2025-04-16 15:36:21] total 409240
[2025-04-16 15:36:21] -rw-r--r-- 2 boincer umatlas 222589403 Apr 16 03:28 ATLAS.root_0
[2025-04-16 15:36:21] -rw-r--r-- 2 boincer umatlas     17569 Apr 16 03:28 start_atlas.sh
[2025-04-16 15:36:21] -rw-r--r-- 2 boincer umatlas    508892 Apr 16 03:28 input.tar.gz
[2025-04-16 15:36:21] -rw------- 1 boincer umatlas 192223428 Apr 16 15:33 HITS.pool.root.1
[2025-04-16 15:36:21] -rw------- 1 boincer umatlas   3706880 Apr 16 15:36 result.tar.gz
15:36:23 (1398): run_atlas exited; CPU time 56546.016440
15:36:23 (1398): called boinc_finish(0)

</stderr_txt>
]]>

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