Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
20:55:52 (3940436): wrapper (7.7.26015): starting
20:55:52 (3940436): wrapper: running run_atlas (--nthreads 4)
[2025-04-16 20:55:52] Arguments: --nthreads 4
[2025-04-16 20:55:52] Threads: 4
[2025-04-16 20:55:52] Checking for CVMFS
[2025-04-16 20:55:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-04-16 20:55:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-04-16 20:55:52] Running cvmfs_config stat atlas.cern.ch
[2025-04-16 20:55:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-04-16 20:55:52] 2.12.7.0 84362 11745 58936 144935 1 56 5841567 6144001 916 130560 0 22856094 99.977 2775568 6173 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.42:3128 1
[2025-04-16 20:55:52] CVMFS is ok
[2025-04-16 20:55:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-04-16 20:55:52] Checking for apptainer binary...
[2025-04-16 20:55:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-04-16 20:55:52] Running /usr/bin/apptainer --version
[2025-04-16 20:55:52] apptainer version 1.4.0
[2025-04-16 20:55:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-04-16 20:55:52] Ryzen8
[2025-04-16 20:55:52] apptainer works
[2025-04-16 20:55:52] Set ATHENA_PROC_NUMBER=4
[2025-04-16 20:55:52] Set ATHENA_CORE_NUMBER=4
[2025-04-16 20:55:52] Starting ATLAS job with PandaID=6603699127
[2025-04-16 20:55:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc2/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-16 22:17:27]  *** The last 200 lines of the pilot log: ***
[2025-04-16 22:17:27]  filetype=log
[2025-04-16 22:17:27]  guid=81695c8b-2e6f-4241-8bc0-e1cda3c73016
[2025-04-16 22:17:27]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-04-16 22:17:27]  is_altstaged=None
[2025-04-16 22:17:27]  is_tar=False
[2025-04-16 22:17:27]  lfn=log.44075483._034825.job.log.tgz.1
[2025-04-16 22:17:27]  mtime=0
[2025-04-16 22:17:27]  protocol_id=None
[2025-04-16 22:17:27]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-04-16 22:17:27]  replicas=None
[2025-04-16 22:17:27]  scope=mc23_13p6TeV
[2025-04-16 22:17:27]  status=None
[2025-04-16 22:17:27]  status_code=0
[2025-04-16 22:17:27]  storage_token=
[2025-04-16 22:17:27]  surl=/var/lib/boinc2/slots/0/PanDA_Pilot-6603699127/log.44075483._034825.job.log.tgz.1
[2025-04-16 22:17:27]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f2/28/log.44075483._034825.job.log.tgz.1
[2025-04-16 22:17:27]  workdir=None
[2025-04-16 22:17:27] ]
[2025-04-16 22:17:27] 2025-04-16 20:17:06,565 | INFO     | transferring file log.44075483._034825.job.log.tgz.1 from /var/lib/boinc2/slots/0/PanDA_Pilot-6603699127/log.44075483._034825.job.log.tgz.1 to /var/lib/boinc2/slot
[2025-04-16 22:17:27] 2025-04-16 20:17:06,565 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc2/slots/0/PanDA_Pilot-6603699127/log.44075483._034825.job.log.tgz.1 /var/lib/boinc2/slots/0/log.44075483._034825.j
[2025-04-16 22:17:27] 2025-04-16 20:17:06,602 | INFO     | adding to output.list: log.44075483._034825.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f2/28/log.44075483._034825.job.log.tg
[2025-04-16 22:17:27] 2025-04-16 20:17:06,602 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-04-16 22:17:27] 2025-04-16 20:17:06,602 | INFO     | summary of transferred files:
[2025-04-16 22:17:27] 2025-04-16 20:17:06,602 | INFO     |  -- lfn=log.44075483._034825.job.log.tgz.1, status_code=0, status=transferred
[2025-04-16 22:17:27] 2025-04-16 20:17:06,603 | INFO     | stage-out finished correctly
[2025-04-16 22:17:27] 2025-04-16 20:17:06,632 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-04-16 22:17:27] 2025-04-16 20:17:08,836 | INFO     | job 6603699127 has state=finished
[2025-04-16 22:17:27] 2025-04-16 20:17:08,837 | INFO     | preparing for final server update for job 6603699127 in state='finished'
[2025-04-16 22:17:27] 2025-04-16 20:17:08,837 | INFO     | this job has now completed (state=finished)
[2025-04-16 22:17:27] 2025-04-16 20:17:08,837 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-04-16 22:17:27] 2025-04-16 20:17:08,837 | INFO     | log transfer has been attempted: DONE
[2025-04-16 22:17:27] 2025-04-16 20:17:08,837 | INFO     | job 6603699127 has finished - writing final server update
[2025-04-16 22:17:27] 2025-04-16 20:17:08,837 | INFO     | total number of processed events: 400 (read)
[2025-04-16 22:17:27] 2025-04-16 20:17:08,843 | INFO     | executing command: lscpu
[2025-04-16 22:17:27] 2025-04-16 20:17:08,872 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-04-16 22:17:27] 2025-04-16 20:17:09,887 | WARNING  | process 3950509 can no longer be monitored (due to stat problems) - aborting
[2025-04-16 22:17:27] 2025-04-16 20:17:09,887 | INFO     | using path: /var/lib/boinc2/slots/0/PanDA_Pilot-6603699127/memory_monitor_summary.json (trf name=prmon)
[2025-04-16 22:17:27] 2025-04-16 20:17:09,929 | INFO     | number of running child processes to parent process 3950509: 1
[2025-04-16 22:17:27] 2025-04-16 20:17:09,929 | INFO     | maximum number of monitored processes: 6
[2025-04-16 22:17:27] 2025-04-16 20:17:12,432 | INFO     | monitor loop #373: job 0:6603699127 is in state 'finished'
[2025-04-16 22:17:27] 2025-04-16 20:17:12,432 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-04-16 22:17:27] 2025-04-16 20:17:14,524 | INFO     | CPU arch script returned: x86-64-v4
[2025-04-16 22:17:27] 2025-04-16 20:17:14,524 | INFO     | using path: /var/lib/boinc2/slots/0/PanDA_Pilot-6603699127/memory_monitor_summary.json (trf name=prmon)
[2025-04-16 22:17:27] 2025-04-16 20:17:14,524 | INFO     | extracted standard info from prmon json
[2025-04-16 22:17:27] 2025-04-16 20:17:14,524 | INFO     | extracted standard memory fields from prmon json
[2025-04-16 22:17:27] 2025-04-16 20:17:14,524 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-04-16 22:17:27] 2025-04-16 20:17:14,525 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-04-16 22:17:27] 2025-04-16 20:17:14,525 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-04-16 22:17:27] 2025-04-16 20:17:14,526 | INFO     | fitting pss+swap vs Time
[2025-04-16 22:17:27] 2025-04-16 20:17:14,526 | INFO     | sum of square deviations: 120605052.0
[2025-04-16 22:17:27] 2025-04-16 20:17:14,526 | INFO     | sum of deviations: -6268431614.000001
[2025-04-16 22:17:27] 2025-04-16 20:17:14,526 | INFO     | mean x: 1744832274.0
[2025-04-16 22:17:27] 2025-04-16 20:17:14,526 | INFO     | mean y: 2417452.2602739725
[2025-04-16 22:17:27] 2025-04-16 20:17:14,526 | INFO     | -- intersect: 90689843941.40198
[2025-04-16 22:17:27] 2025-04-16 20:17:14,526 | INFO     | intersect: 90689843941.40198
[2025-04-16 22:17:27] 2025-04-16 20:17:14,526 | INFO     | chi2: 0.08963267734695372
[2025-04-16 22:17:27] 2025-04-16 20:17:14,526 | INFO     | -- intersect: 90689843941.40198
[2025-04-16 22:17:27] 2025-04-16 20:17:14,526 | INFO     | current memory leak: -51.97 B/s (using 73 data points, chi2=0.09)
[2025-04-16 22:17:27] 2025-04-16 20:17:14,526 | INFO     | ..............................
[2025-04-16 22:17:27] 2025-04-16 20:17:14,526 | INFO     | . Timing measurements:
[2025-04-16 22:17:27] 2025-04-16 20:17:14,526 | INFO     | . get job = 0 s
[2025-04-16 22:17:27] 2025-04-16 20:17:14,526 | INFO     | . initial setup = 1 s
[2025-04-16 22:17:27] 2025-04-16 20:17:14,526 | INFO     | . payload setup = 1 s
[2025-04-16 22:17:27] 2025-04-16 20:17:14,527 | INFO     | . stage-in = 0 s
[2025-04-16 22:17:27] 2025-04-16 20:17:14,527 | INFO     | . payload execution = 4852 s
[2025-04-16 22:17:27] 2025-04-16 20:17:14,527 | INFO     | . stage-out = 0 s
[2025-04-16 22:17:27] 2025-04-16 20:17:14,527 | INFO     | . log creation = 0 s
[2025-04-16 22:17:27] 2025-04-16 20:17:14,527 | INFO     | ..............................
[2025-04-16 22:17:27] 2025-04-16 20:17:15,073 | INFO     | 
[2025-04-16 22:17:27] 2025-04-16 20:17:15,073 | INFO     | job summary report
[2025-04-16 22:17:27] 2025-04-16 20:17:15,073 | INFO     | --------------------------------------------------
[2025-04-16 22:17:27] 2025-04-16 20:17:15,073 | INFO     | PanDA job id: 6603699127
[2025-04-16 22:17:27] 2025-04-16 20:17:15,073 | INFO     | task id: 44075483
[2025-04-16 22:17:27] 2025-04-16 20:17:15,073 | INFO     | errors: (none)
[2025-04-16 22:17:27] 2025-04-16 20:17:15,073 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-16 22:17:27] 2025-04-16 20:17:15,073 | INFO     | pilot state: finished 
[2025-04-16 22:17:27] 2025-04-16 20:17:15,073 | INFO     | transexitcode: 0
[2025-04-16 22:17:27] 2025-04-16 20:17:15,073 | INFO     | exeerrorcode: 0
[2025-04-16 22:17:27] 2025-04-16 20:17:15,073 | INFO     | exeerrordiag: 
[2025-04-16 22:17:27] 2025-04-16 20:17:15,073 | INFO     | exitcode: 0
[2025-04-16 22:17:27] 2025-04-16 20:17:15,073 | INFO     | exitmsg: OK
[2025-04-16 22:17:27] 2025-04-16 20:17:15,073 | INFO     | cpuconsumptiontime: 18235 s
[2025-04-16 22:17:27] 2025-04-16 20:17:15,073 | INFO     | nevents: 400
[2025-04-16 22:17:27] 2025-04-16 20:17:15,073 | INFO     | neventsw: 0
[2025-04-16 22:17:27] 2025-04-16 20:17:15,073 | INFO     | pid: 3950509
[2025-04-16 22:17:27] 2025-04-16 20:17:15,073 | INFO     | pgrp: 3950509
[2025-04-16 22:17:27] 2025-04-16 20:17:15,073 | INFO     | corecount: 4
[2025-04-16 22:17:27] 2025-04-16 20:17:15,073 | INFO     | event service: False
[2025-04-16 22:17:27] 2025-04-16 20:17:15,073 | INFO     | sizes: {0: 2417366, 1: 2417572, 10: 2417600, 4857: 2443887, 4858: 2452886, 4866: 2453000}
[2025-04-16 22:17:27] 2025-04-16 20:17:15,073 | INFO     | --------------------------------------------------
[2025-04-16 22:17:27] 2025-04-16 20:17:15,073 | INFO     | 
[2025-04-16 22:17:27] 2025-04-16 20:17:15,074 | INFO     | executing command: ls -lF /var/lib/boinc2/slots/0
[2025-04-16 22:17:27] 2025-04-16 20:17:15,122 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-16 22:17:27] 2025-04-16 20:17:15,122 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-16 22:17:27] 2025-04-16 20:17:15,122 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-16 22:17:27] 2025-04-16 20:17:15,122 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-16 22:17:27] 2025-04-16 20:17:15,122 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-16 22:17:27] 2025-04-16 20:17:15,122 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-16 22:17:27] 2025-04-16 20:17:15,122 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-16 22:17:27] 2025-04-16 20:17:15,122 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-16 22:17:27] 2025-04-16 20:17:15,122 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-16 22:17:27] 2025-04-16 20:17:15,122 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-16 22:17:27] 2025-04-16 20:17:15,122 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-16 22:17:27] 2025-04-16 20:17:15,122 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-16 22:17:27] 2025-04-16 20:17:15,122 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-16 22:17:27] 2025-04-16 20:17:15,122 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-16 22:17:27] 2025-04-16 20:17:15,122 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-16 22:17:27] 2025-04-16 20:17:15,122 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-16 22:17:27] 2025-04-16 20:17:15,122 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-16 22:17:27] 2025-04-16 20:17:15,122 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-16 22:17:27] 2025-04-16 20:17:15,122 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-16 22:17:27] 2025-04-16 20:17:15,122 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-16 22:17:27] 2025-04-16 20:17:15,123 | INFO     | job 6603699127 has completed (purged errors)
[2025-04-16 22:17:27] 2025-04-16 20:17:15,123 | INFO     | overall cleanup function is called
[2025-04-16 22:17:27] 2025-04-16 20:17:16,130 | INFO     | --- collectZombieJob: --- 10, [3950509]
[2025-04-16 22:17:27] 2025-04-16 20:17:16,130 | INFO     | zombie collector waiting for pid 3950509
[2025-04-16 22:17:27] 2025-04-16 20:17:16,130 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-16 22:17:27] 2025-04-16 20:17:16,130 | INFO     | collected zombie processes
[2025-04-16 22:17:27] 2025-04-16 20:17:16,130 | INFO     | will attempt to kill all subprocesses of pid=3950509
[2025-04-16 22:17:27] 2025-04-16 20:17:16,182 | INFO     | process IDs to be killed: [3950509] (in reverse order)
[2025-04-16 22:17:27] 2025-04-16 20:17:16,240 | WARNING  | found no corresponding commands to process id(s)
[2025-04-16 22:17:27] 2025-04-16 20:17:16,240 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-16 22:17:27] 2025-04-16 20:17:16,242 | INFO     | did not find any defunct processes belonging to 3950509
[2025-04-16 22:17:27] 2025-04-16 20:17:16,243 | INFO     | did not find any defunct processes belonging to 3950509
[2025-04-16 22:17:27] 2025-04-16 20:17:16,243 | INFO     | ready for new job
[2025-04-16 22:17:27] 2025-04-16 20:17:16,243 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-16 22:17:27] 2025-04-16 20:17:16,244 | INFO     | **************************************
[2025-04-16 22:17:27] 2025-04-16 20:17:16,244 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-04-16 22:17:27] 2025-04-16 20:17:16,244 | INFO     | **************************************
[2025-04-16 22:17:27] 2025-04-16 20:17:16,244 | INFO     | 
[2025-04-16 22:17:27] 2025-04-16 20:17:16,245 | INFO     | architecture information:
[2025-04-16 22:17:27] 2025-04-16 20:17:16,246 | INFO     | executing command: cat /etc/os-release
[2025-04-16 22:17:27] 2025-04-16 20:17:16,262 | INFO     | cat /etc/os-release:
[2025-04-16 22:17:27] NAME="CentOS Linux"
[2025-04-16 22:17:27] VERSION="7 (Core)"
[2025-04-16 22:17:27] ID="centos"
[2025-04-16 22:17:27] ID_LIKE="rhel fedora"
[2025-04-16 22:17:27] VERSION_ID="7"
[2025-04-16 22:17:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-16 22:17:27] ANSI_COLOR="0;31"
[2025-04-16 22:17:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-16 22:17:27] HOME_URL="https://www.centos.org/"
[2025-04-16 22:17:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-16 22:17:27] 
[2025-04-16 22:17:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-16 22:17:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-16 22:17:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-16 22:17:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-16 22:17:27] 
[2025-04-16 22:17:27] 2025-04-16 20:17:16,262 | INFO     | **************************************
[2025-04-16 22:17:27] 2025-04-16 20:17:16,765 | INFO     | executing command: df -mP /var/lib/boinc2/slots/0
[2025-04-16 22:17:27] 2025-04-16 20:17:16,778 | INFO     | sufficient remaining disk space (79209431040 B)
[2025-04-16 22:17:27] 2025-04-16 20:17:16,779 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-16 22:17:27] 2025-04-16 20:17:16,779 | INFO     | current server update state: UPDATING_FINAL
[2025-04-16 22:17:27] 2025-04-16 20:17:16,779 | INFO     | update_server=False
[2025-04-16 22:17:27] 2025-04-16 20:17:16,779 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-16 22:17:27] 2025-04-16 20:17:16,779 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-16 22:17:27] 2025-04-16 20:17:16,779 | INFO     | aborting loop
[2025-04-16 22:17:27] 2025-04-16 20:17:17,120 | INFO     | all payload control threads have been joined
[2025-04-16 22:17:27] 2025-04-16 20:17:17,133 | INFO     | all data control threads have been joined
[2025-04-16 22:17:27] 2025-04-16 20:17:17,146 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-16 22:17:27] 2025-04-16 20:17:17,186 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-16 22:17:27] 2025-04-16 20:17:17,472 | INFO     | found 0 job(s) in 20 queues
[2025-04-16 22:17:27] 2025-04-16 20:17:17,472 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-16 22:17:27] 2025-04-16 20:17:17,472 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-16 22:17:27] 2025-04-16 20:17:17,710 | INFO     | all job control threads have been joined
[2025-04-16 22:17:27] 2025-04-16 20:17:17,784 | INFO     | [job] retrieve thread has finished
[2025-04-16 22:17:27] 2025-04-16 20:17:17,784 | INFO     | [job] job monitor thread has finished
[2025-04-16 22:17:27] 2025-04-16 20:17:18,118 | INFO     | [payload] validate_post thread has finished
[2025-04-16 22:17:27] 2025-04-16 20:17:18,125 | INFO     | [payload] control thread has finished
[2025-04-16 22:17:27] 2025-04-16 20:17:18,140 | INFO     | [data] control thread has finished
[2025-04-16 22:17:27] 2025-04-16 20:17:18,256 | INFO     | [payload] failed_post thread has finished
[2025-04-16 22:17:27] 2025-04-16 20:17:18,713 | INFO     | [job] control thread has finished
[2025-04-16 22:17:27] 2025-04-16 20:17:18,901 | INFO     | [payload] execute_payloads thread has finished
[2025-04-16 22:17:27] 2025-04-16 20:17:18,915 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-16 22:17:27] 2025-04-16 20:17:19,001 | INFO     | [data] copytool_in thread has finished
[2025-04-16 22:17:27] 2025-04-16 20:17:19,028 | INFO     | [job] validate thread has finished
[2025-04-16 22:17:27] 2025-04-16 20:17:19,099 | INFO     | [payload] validate_pre thread has finished
[2025-04-16 22:17:27] 2025-04-16 20:17:19,151 | INFO     | [data] copytool_out thread has finished
[2025-04-16 22:17:27] 2025-04-16 20:17:19,166 | INFO     | [job] create_data_payload thread has finished
[2025-04-16 22:17:27] 2025-04-16 20:17:19,583 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-16 22:17:27] 2025-04-16 20:17:20,588 | INFO     | [job] queue monitor thread has finished
[2025-04-16 22:17:27] 2025-04-16 20:17:21,192 | INFO     | [data] queue_monitor thread has finished
[2025-04-16 22:17:27] 2025-04-16 20:17:21,929 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 129759716235072)>', '<ExcThread(monitor, started 129759073789696)>']
[2025-04-16 22:17:27] 2025-04-16 20:17:22,496 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-16 22:17:27] 2025-04-16 20:17:22,496 | INFO     | [monitor] control thread has ended
[2025-04-16 22:17:27] 2025-04-16 20:17:26,954 | INFO     | all workflow threads have been joined
[2025-04-16 22:17:27] 2025-04-16 20:17:26,954 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-16 22:17:27] 2025-04-16 20:17:26,955 | INFO     | traces error code: 0
[2025-04-16 22:17:27] 2025-04-16 20:17:26,955 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-16 22:17:27] 2025-04-16 20:17:27,121 [wrapper] ==== pilot stdout END ====
[2025-04-16 22:17:27] 2025-04-16 20:17:27,122 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-16 22:17:27] 2025-04-16 20:17:27,127 [wrapper] pilotpid: 3944084
[2025-04-16 22:17:27] 2025-04-16 20:17:27,128 [wrapper] Pilot exit status: 0
[2025-04-16 22:17:27] 2025-04-16 20:17:27,146 [wrapper] pandaids: 6603699127
[2025-04-16 22:17:27] 2025-04-16 20:17:27,182 [wrapper] cleanup supervisor_pilot 3985848 3944085
[2025-04-16 22:17:27] 2025-04-16 20:17:27,183 [wrapper] Test setup, not cleaning
[2025-04-16 22:17:27] 2025-04-16 20:17:27,187 [wrapper] apfmon messages muted
[2025-04-16 22:17:27] 2025-04-16 20:17:27,188 [wrapper] ==== wrapper stdout END ====
[2025-04-16 22:17:27] 2025-04-16 20:17:27,190 [wrapper] ==== wrapper stderr END ====
[2025-04-16 22:17:27]  *** Error codes and diagnostics ***
[2025-04-16 22:17:27]     "exeErrorCode": 0,
[2025-04-16 22:17:27]     "exeErrorDiag": "",
[2025-04-16 22:17:27]     "pilotErrorCode": 0,
[2025-04-16 22:17:27]     "pilotErrorDiag": "",
[2025-04-16 22:17:27]  *** Listing of results directory ***
[2025-04-16 22:17:27] insgesamt 416620
[2025-04-16 22:17:27] -rw-r--r-- 1 boinc boinc    495897 16. Apr 04:12 pilot3.tar.gz
[2025-04-16 22:17:27] -rw-r--r-- 1 boinc boinc      5111 16. Apr 04:19 queuedata.json
[2025-04-16 22:17:27] -rwx------ 1 boinc boinc     37140 16. Apr 04:20 runpilot2-wrapper.sh
[2025-04-16 22:17:27] -rw-r--r-- 1 boinc boinc       100 16. Apr 20:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-16 22:17:27] -rwxr-xr-x 1 boinc boinc      7986 16. Apr 20:55 run_atlas
[2025-04-16 22:17:27] -rw-r--r-- 1 boinc boinc       105 16. Apr 20:55 job.xml
[2025-04-16 22:17:27] -rw-r--r-- 1 boinc boinc      9582 16. Apr 20:55 init_data.xml
[2025-04-16 22:17:27] -rw-r--r-- 2 boinc boinc 225662263 16. Apr 20:55 EVNT.44075481._001367.pool.root.1
[2025-04-16 22:17:27] drwxrwx--x 2 boinc boinc      4096 16. Apr 20:55 shared
[2025-04-16 22:17:27] -rw-r--r-- 2 boinc boinc    508894 16. Apr 20:55 input.tar.gz
[2025-04-16 22:17:27] -rw-r--r-- 2 boinc boinc     17569 16. Apr 20:55 start_atlas.sh
[2025-04-16 22:17:27] -rw-r--r-- 1 boinc boinc         0 16. Apr 20:55 boinc_lockfile
[2025-04-16 22:17:27] -rw-r--r-- 1 boinc boinc      2578 16. Apr 20:55 pandaJob.out
[2025-04-16 22:17:27] -rw------- 1 boinc boinc       461 16. Apr 20:55 setup.sh.local
[2025-04-16 22:17:27] -rw------- 1 boinc boinc    986552 16. Apr 20:55 agis_schedconf.cvmfs.json
[2025-04-16 22:17:27] -rw------- 1 boinc boinc   1603529 16. Apr 20:55 agis_ddmendpoints.agis.ALL.json
[2025-04-16 22:17:27] drwx------ 4 boinc boinc      4096 16. Apr 20:55 pilot3
[2025-04-16 22:17:27] -rw------- 1 boinc boinc        95 16. Apr 22:16 pilot_heartbeat.json
[2025-04-16 22:17:27] -rw------- 1 boinc boinc 195644758 16. Apr 22:16 HITS.44075483._034825.pool.root.1
[2025-04-16 22:17:27] -rw-r--r-- 1 boinc boinc       529 16. Apr 22:16 boinc_task_state.xml
[2025-04-16 22:17:27] -rw------- 1 boinc boinc      1021 16. Apr 22:17 memory_monitor_summary.json
[2025-04-16 22:17:27] -rw------- 1 boinc boinc    237844 16. Apr 22:17 log.44075483._034825.job.log.tgz.1
[2025-04-16 22:17:27] -rw------- 1 boinc boinc      7662 16. Apr 22:17 heartbeat.json
[2025-04-16 22:17:27] -rw-r--r-- 1 boinc boinc      8192 16. Apr 22:17 boinc_mmap_file
[2025-04-16 22:17:27] -rw-r--r-- 1 boinc boinc        27 16. Apr 22:17 wrapper_checkpoint.txt
[2025-04-16 22:17:27] -rw------- 1 boinc boinc      4354 16. Apr 22:17 pilotlog.txt
[2025-04-16 22:17:27] -rw------- 1 boinc boinc    491683 16. Apr 22:17 log.44075483._034825.job.log.1
[2025-04-16 22:17:27] -rw------- 1 boinc boinc       357 16. Apr 22:17 output.list
[2025-04-16 22:17:27] -rw-r--r-- 1 boinc boinc       620 16. Apr 22:17 runtime_log
[2025-04-16 22:17:27] -rw------- 1 boinc boinc    747520 16. Apr 22:17 result.tar.gz
[2025-04-16 22:17:27] -rw-r--r-- 1 boinc boinc     11363 16. Apr 22:17 runtime_log.err
[2025-04-16 22:17:27] -rw------- 1 boinc boinc       642 16. Apr 22:17 qHBODmoY7O7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmLMZLDmuLvnim.diag
[2025-04-16 22:17:27] -rw-r--r-- 1 boinc boinc     20893 16. Apr 22:17 stderr.txt
[2025-04-16 22:17:27] HITS file was successfully produced:
[2025-04-16 22:17:27] -rw------- 1 boinc boinc 195644758 16. Apr 22:16 shared/HITS.pool.root.1
[2025-04-16 22:17:27]  *** Contents of shared directory: ***
[2025-04-16 22:17:27] insgesamt 412696
[2025-04-16 22:17:27] -rw-r--r-- 2 boinc boinc 225662263 16. Apr 20:55 ATLAS.root_0
[2025-04-16 22:17:27] -rw-r--r-- 2 boinc boinc    508894 16. Apr 20:55 input.tar.gz
[2025-04-16 22:17:27] -rw-r--r-- 2 boinc boinc     17569 16. Apr 20:55 start_atlas.sh
[2025-04-16 22:17:27] -rw------- 1 boinc boinc 195644758 16. Apr 22:16 HITS.pool.root.1
[2025-04-16 22:17:27] -rw------- 1 boinc boinc    747520 16. Apr 22:17 result.tar.gz
22:17:28 (3940436): run_atlas exited; CPU time 18264.977058
22:17:28 (3940436): called boinc_finish(0)

</stderr_txt>
]]>

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